ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart16h08 |
|---|---|
| Clone Library Name | barley_pub |
>RS6B_ARATH (P51430) 40S ribosomal protein S6-2| Length = 249 Score = 130 bits (328), Expect = 2e-30 Identities = 67/100 (67%), Positives = 75/100 (75%) Frame = -3 Query: 508 GKDDDVRSYVNTYRRTFLNKKGKKVSKAPKIQRLVTPLTLQXXXXXXXXXXXXXXXXKSE 329 GK+DDVR YVNTYRRTF NKKGKKVSKAPKIQRLVTPLTLQ S+ Sbjct: 150 GKEDDVRKYVNTYRRTFTNKKGKKVSKAPKIQRLVTPLTLQRKRARIADKKKRIAKANSD 209 Query: 328 AAEYQKLLAQRLKEQRDRRSESMAKRRSKLSAATKAPAVS 209 AA+YQKLLA RLKEQRDRRSES+AK+RS+LS+A P + Sbjct: 210 AADYQKLLASRLKEQRDRRSESLAKKRSRLSSAPAKPVAA 249
>RS6A_ARATH (O48549) 40S ribosomal protein S6-1| Length = 250 Score = 129 bits (323), Expect = 6e-30 Identities = 66/100 (66%), Positives = 77/100 (77%) Frame = -3 Query: 505 KDDDVRSYVNTYRRTFLNKKGKKVSKAPKIQRLVTPLTLQXXXXXXXXXXXXXXXXKSEA 326 K+DDVR+YVNTYRR F NKKGK+VSKAPKIQRLVTPLTLQ S+A Sbjct: 151 KEDDVRTYVNTYRRKFTNKKGKEVSKAPKIQRLVTPLTLQRKRARIADKKKKIAKANSDA 210 Query: 325 AEYQKLLAQRLKEQRDRRSESMAKRRSKLSAATKAPAVSA 206 A+YQKLLA RLKEQRDRRSES+AK+RS+LS+A P+V+A Sbjct: 211 ADYQKLLASRLKEQRDRRSESLAKKRSRLSSAAAKPSVTA 250
>RS6_ASPOF (Q9M3V8) 40S ribosomal protein S6| Length = 251 Score = 127 bits (320), Expect = 1e-29 Identities = 71/101 (70%), Positives = 76/101 (75%), Gaps = 1/101 (0%) Frame = -3 Query: 505 KDDDVRSYVNTYRRTFLNKKGKKVSKAPKIQRLVTPLTLQXXXXXXXXXXXXXXXXKSEA 326 K+DDVR YVNTYRRTF NKKGK SKAPKIQRLVTPLTLQ KSEA Sbjct: 151 KEDDVRKYVNTYRRTFTNKKGKTCSKAPKIQRLVTPLTLQRKRARIAEKKKRVAKAKSEA 210 Query: 325 AEYQKLLAQRLKEQRDRRSESMAKRRSKLS-AATKAPAVSA 206 AEYQKLLA RLKEQRDRRSES+AK+RS+LS AA K +VSA Sbjct: 211 AEYQKLLASRLKEQRDRRSESLAKKRSRLSAAAAKTASVSA 251
>RS6_TOBAC (P29345) 40S ribosomal protein S6 (Fragment)| Length = 199 Score = 101 bits (252), Expect = 1e-21 Identities = 60/100 (60%), Positives = 70/100 (70%) Frame = -3 Query: 505 KDDDVRSYVNTYRRTFLNKKGKKVSKAPKIQRLVTPLTLQXXXXXXXXXXXXXXXXKSEA 326 K+DDVR YVNT KG SKAPKIQRLVTPLTLQ KSEA Sbjct: 104 KEDDVRKYVNTTAEFTTKWKG---SKAPKIQRLVTPLTLQRKRARIADKKKRIAKAKSEA 160 Query: 325 AEYQKLLAQRLKEQRDRRSESMAKRRSKLSAATKAPAVSA 206 AEYQKLLA RLKEQR++RSES+AK+RS+LSAA+K P+++A Sbjct: 161 AEYQKLLASRLKEQREKRSESLAKKRSRLSAASK-PSIAA 199
>RS6_RAT (P62755) 40S ribosomal protein S6| Length = 249 Score = 76.3 bits (186), Expect = 5e-14 Identities = 50/96 (52%), Positives = 60/96 (62%), Gaps = 3/96 (3%) Frame = -3 Query: 505 KDDDVRSYVNTYRRTFLNKKGKKV-SKAPKIQRLVTPLTLQXXXXXXXXXXXXXXXXKSE 329 K+DDVR YV R LNK+GKK +KAPKIQRLVTP LQ K E Sbjct: 149 KEDDVRQYVV---RKPLNKEGKKPRTKAPKIQRLVTPRVLQHKRRRIALKKQRTKKNKEE 205 Query: 328 AAEYQKLLAQRLKEQRDRRSESMAKRR--SKLSAAT 227 AAEY KLLA+R+KE +++R E +AKRR S L A+T Sbjct: 206 AAEYAKLLAKRMKEAKEKRQEQIAKRRRLSSLRAST 241
>RS6_MOUSE (P62754) 40S ribosomal protein S6 (Phosphoprotein NP33)| Length = 249 Score = 76.3 bits (186), Expect = 5e-14 Identities = 50/96 (52%), Positives = 60/96 (62%), Gaps = 3/96 (3%) Frame = -3 Query: 505 KDDDVRSYVNTYRRTFLNKKGKKV-SKAPKIQRLVTPLTLQXXXXXXXXXXXXXXXXKSE 329 K+DDVR YV R LNK+GKK +KAPKIQRLVTP LQ K E Sbjct: 149 KEDDVRQYVV---RKPLNKEGKKPRTKAPKIQRLVTPRVLQHKRRRIALKKQRTKKNKEE 205 Query: 328 AAEYQKLLAQRLKEQRDRRSESMAKRR--SKLSAAT 227 AAEY KLLA+R+KE +++R E +AKRR S L A+T Sbjct: 206 AAEYAKLLAKRMKEAKEKRQEQIAKRRRLSSLRAST 241
>RS6_HUMAN (P62753) 40S ribosomal protein S6 (Phosphoprotein NP33)| Length = 249 Score = 76.3 bits (186), Expect = 5e-14 Identities = 50/96 (52%), Positives = 60/96 (62%), Gaps = 3/96 (3%) Frame = -3 Query: 505 KDDDVRSYVNTYRRTFLNKKGKKV-SKAPKIQRLVTPLTLQXXXXXXXXXXXXXXXXKSE 329 K+DDVR YV R LNK+GKK +KAPKIQRLVTP LQ K E Sbjct: 149 KEDDVRQYVV---RKPLNKEGKKPRTKAPKIQRLVTPRVLQHKRRRIALKKQRTKKNKEE 205 Query: 328 AAEYQKLLAQRLKEQRDRRSESMAKRR--SKLSAAT 227 AAEY KLLA+R+KE +++R E +AKRR S L A+T Sbjct: 206 AAEYAKLLAKRMKEAKEKRQEQIAKRRRLSSLRAST 241
>RS6_CHICK (P47838) 40S ribosomal protein S6| Length = 249 Score = 75.1 bits (183), Expect = 1e-13 Identities = 49/96 (51%), Positives = 60/96 (62%), Gaps = 3/96 (3%) Frame = -3 Query: 505 KDDDVRSYVNTYRRTFLNKKGKKV-SKAPKIQRLVTPLTLQXXXXXXXXXXXXXXXXKSE 329 K+DDVR YV R LNK+GKK +KAPKIQRLVTP LQ K E Sbjct: 149 KEDDVRQYVV---RKPLNKEGKKPRTKAPKIQRLVTPRVLQHKRRRIALKKQRTQKNKEE 205 Query: 328 AAEYQKLLAQRLKEQRDRRSESMAKRR--SKLSAAT 227 AA+Y KLLA+R+KE +++R E +AKRR S L A+T Sbjct: 206 AADYAKLLAKRMKEAKEKRQEQIAKRRRLSSLRAST 241
>RS6_ICTPU (Q90YR8) 40S ribosomal protein S6| Length = 249 Score = 73.2 bits (178), Expect = 4e-13 Identities = 46/87 (52%), Positives = 54/87 (62%), Gaps = 1/87 (1%) Frame = -3 Query: 505 KDDDVRSYVNTYRRTFLNKKGKKV-SKAPKIQRLVTPLTLQXXXXXXXXXXXXXXXXKSE 329 K+DDVR YV R L K+GKK +KAPKIQRLVTP LQ K E Sbjct: 149 KEDDVRQYVV---RRPLTKEGKKPRTKAPKIQRLVTPRVLQHKRRRIALKRQRTQKNKDE 205 Query: 328 AAEYQKLLAQRLKEQRDRRSESMAKRR 248 AAEY KLLA+RLKE +++R E +AKRR Sbjct: 206 AAEYAKLLAKRLKEAKEKRQEKIAKRR 232
>RS6_ONCMY (Q9YGF2) 40S ribosomal protein S6| Length = 249 Score = 71.6 bits (174), Expect = 1e-12 Identities = 47/96 (48%), Positives = 59/96 (61%), Gaps = 3/96 (3%) Frame = -3 Query: 505 KDDDVRSYVNTYRRTFLNKKGKKV-SKAPKIQRLVTPLTLQXXXXXXXXXXXXXXXXKSE 329 K+DDVR YV R L K+GKK +KAP+IQRLVTP LQ K E Sbjct: 149 KEDDVRQYVV---RRPLTKEGKKPRTKAPRIQRLVTPRVLQHKRRRIALKKQRTQKNKEE 205 Query: 328 AAEYQKLLAQRLKEQRDRRSESMAKRR--SKLSAAT 227 A+EY KLLA+R+KE +++R E +AKRR S L A+T Sbjct: 206 ASEYAKLLAKRMKEAKEKRQEQIAKRRRLSSLRAST 241
>RS6_XENLA (P39017) 40S ribosomal protein S6| Length = 249 Score = 70.5 bits (171), Expect = 3e-12 Identities = 48/96 (50%), Positives = 58/96 (60%), Gaps = 3/96 (3%) Frame = -3 Query: 505 KDDDVRSYVNTYRRTFLNKKGKKV-SKAPKIQRLVTPLTLQXXXXXXXXXXXXXXXXKSE 329 K+DDVR YV R L K+GKK +KAPKIQRLVTP LQ K E Sbjct: 149 KEDDVRQYVV---RKPLAKEGKKPRTKAPKIQRLVTPRVLQHKRRRIALKKQRTQKNKEE 205 Query: 328 AAEYQKLLAQRLKEQRDRRSESMAKRR--SKLSAAT 227 A+EY KLLA+R KE +++R E +AKRR S L A+T Sbjct: 206 ASEYAKLLAKRSKEAKEKRQEQIAKRRRLSSLRAST 241
>RS6_APLCA (Q9BMX5) 40S ribosomal protein S6| Length = 247 Score = 66.2 bits (160), Expect = 5e-11 Identities = 42/90 (46%), Positives = 52/90 (57%), Gaps = 2/90 (2%) Frame = -3 Query: 505 KDDDVRSYVNTYRRTFLNKKGKKV-SKAPKIQRLVTPLTLQXXXXXXXXXXXXXXXXKSE 329 K+DDVR YV RR + GKK SKAPKIQRLVTP+ LQ + + Sbjct: 149 KEDDVRQYV--VRRPLPERDGKKAKSKAPKIQRLVTPVVLQRKRARMALKKKRVTKKRED 206 Query: 328 AAEYQKLLAQRLKEQRDRRSE-SMAKRRSK 242 AEY KLLAQR+KE ++R+ E + RSK Sbjct: 207 HAEYTKLLAQRMKEAKERKMERKRSNSRSK 236
>RS6_DEBHA (Q6BXH8) 40S ribosomal protein S6| Length = 236 Score = 65.5 bits (158), Expect = 8e-11 Identities = 42/91 (46%), Positives = 52/91 (57%) Frame = -3 Query: 505 KDDDVRSYVNTYRRTFLNKKGKKVSKAPKIQRLVTPLTLQXXXXXXXXXXXXXXXXKSEA 326 K+DDVR +V RR + K KK +KAPKIQRLVTP TLQ + A Sbjct: 149 KEDDVRQFV--VRREVV-KGDKKYTKAPKIQRLVTPQTLQRKRALKAQKVKNAQQQRDAA 205 Query: 325 AEYQKLLAQRLKEQRDRRSESMAKRRSKLSA 233 AEY +LLAQRL E++ R+E +R S L A Sbjct: 206 AEYAQLLAQRLHERKAERAEIKKRRASSLKA 236
>RS6_YARLI (Q6C169) 40S ribosomal protein S6| Length = 242 Score = 63.5 bits (153), Expect = 3e-10 Identities = 37/89 (41%), Positives = 48/89 (53%) Frame = -3 Query: 505 KDDDVRSYVNTYRRTFLNKKGKKVSKAPKIQRLVTPLTLQXXXXXXXXXXXXXXXXKSEA 326 K+DDVR YV RR K GK +KAPKIQRL+TP L K A Sbjct: 149 KEDDVRQYV--IRREVTTKSGKTYTKAPKIQRLITPRRLAHKAQLREKKVKAIQASKDAA 206 Query: 325 AEYQKLLAQRLKEQRDRRSESMAKRRSKL 239 AEY +LLA+R+ E++ ++E +R S L Sbjct: 207 AEYAQLLAKRVAEKKSEKAEEKKRRASSL 235
>RS6_MANSE (Q94624) 40S ribosomal protein S6| Length = 253 Score = 63.2 bits (152), Expect = 4e-10 Identities = 44/104 (42%), Positives = 56/104 (53%), Gaps = 4/104 (3%) Frame = -3 Query: 505 KDDDVRSYVNTYRRTFLNKKGKKVSK----APKIQRLVTPLTLQXXXXXXXXXXXXXXXX 338 K+DDVR YV + K+GK+ +K APKIQRLVTP+ LQ Sbjct: 149 KEDDVRRYV--VKALLPAKEGKENAKPRYKAPKIQRLVTPVVLQRRRHRLALKKKRLAKR 206 Query: 337 KSEAAEYQKLLAQRLKEQRDRRSESMAKRRSKLSAATKAPAVSA 206 KS A+Y KLLAQR KE + RR E + +RRS +K+ SA Sbjct: 207 KSAEADYAKLLAQRKKESKVRRQEEIKRRRSASMRDSKSSNQSA 250
>RS6_SPOFR (Q95V32) 40S ribosomal protein S6| Length = 253 Score = 62.4 bits (150), Expect = 7e-10 Identities = 43/104 (41%), Positives = 55/104 (52%), Gaps = 4/104 (3%) Frame = -3 Query: 505 KDDDVRSYVNTYRRTFLNKKGKKVSK----APKIQRLVTPLTLQXXXXXXXXXXXXXXXX 338 K+DDVR YV +R K+GK+ +K APKIQRLVTP+ LQ Sbjct: 149 KEDDVRRYV--VKRLLPAKEGKENAKPRYKAPKIQRLVTPVVLQRRRHRLALKKKRLAKR 206 Query: 337 KSEAAEYQKLLAQRLKEQRDRRSESMAKRRSKLSAATKAPAVSA 206 K +Y KLLAQR KE + RR E + +RRS +K+ SA Sbjct: 207 KQSENDYAKLLAQRKKESKVRRQEELKRRRSASMRDSKSSDKSA 250
>RS6_DROME (P29327) 40S ribosomal protein S6| Length = 248 Score = 61.6 bits (148), Expect = 1e-09 Identities = 43/101 (42%), Positives = 53/101 (52%), Gaps = 1/101 (0%) Frame = -3 Query: 505 KDDDVRSYVNTYRRTFLNKKGKKV-SKAPKIQRLVTPLTLQXXXXXXXXXXXXXXXXKSE 329 K+DDVR +V RR K KK SKAPKIQRL+TP+ LQ K Sbjct: 149 KEDDVRRFV--VRRPLPAKDNKKATSKAPKIQRLITPVVLQRKHRRIALKKKRQIASKEA 206 Query: 328 AAEYQKLLAQRLKEQRDRRSESMAKRRSKLSAATKAPAVSA 206 +A+Y KLL QR KE + +R E AKRR S +VS+ Sbjct: 207 SADYAKLLVQRKKESKAKREE--AKRRRSASIRESKSSVSS 245
>RS6_KLULA (Q6CM04) 40S ribosomal protein S6| Length = 236 Score = 61.2 bits (147), Expect = 2e-09 Identities = 38/91 (41%), Positives = 49/91 (53%) Frame = -3 Query: 505 KDDDVRSYVNTYRRTFLNKKGKKVSKAPKIQRLVTPLTLQXXXXXXXXXXXXXXXXKSEA 326 K+DDVR YV R + K K +KAPKIQRLVTP LQ + A Sbjct: 149 KEDDVRDYVI---RREVTKGDKSYTKAPKIQRLVTPQRLQRKRQQKSLKIKNAQAQREAA 205 Query: 325 AEYQKLLAQRLKEQRDRRSESMAKRRSKLSA 233 AEY +LLA+RL E++ ++E +R S L A Sbjct: 206 AEYAQLLAKRLSERKAEKAEVRKRRASSLKA 236
>RS6A_SCHPO (P05752) 40S ribosomal protein S6-A| Length = 239 Score = 60.8 bits (146), Expect = 2e-09 Identities = 38/90 (42%), Positives = 51/90 (56%), Gaps = 1/90 (1%) Frame = -3 Query: 505 KDDDVRSYVNTYRRTFLNKKGKK-VSKAPKIQRLVTPLTLQXXXXXXXXXXXXXXXXKSE 329 K+DDVR +V R K+GKK +KAPKIQRLVTP TLQ + E Sbjct: 149 KEDDVRQFV-IRREVVPKKEGKKPYTKAPKIQRLVTPRTLQHKRHRFALKRRQAEKNREE 207 Query: 328 AAEYQKLLAQRLKEQRDRRSESMAKRRSKL 239 AAE+ +L+A+R+ E + +R A+R S L Sbjct: 208 AAEFAQLMAKRVAEAKQKREVVKARRASSL 237
>RS6_ASHGO (Q74ZK3) 40S ribosomal protein S6| Length = 236 Score = 60.5 bits (145), Expect = 3e-09 Identities = 39/91 (42%), Positives = 50/91 (54%) Frame = -3 Query: 505 KDDDVRSYVNTYRRTFLNKKGKKVSKAPKIQRLVTPLTLQXXXXXXXXXXXXXXXXKSEA 326 KDDDVR +V RR + K K +KAPKIQRLVTP LQ + A Sbjct: 149 KDDDVRDFV--IRREVV-KGDKTYTKAPKIQRLVTPQRLQRKRHQRALKVRNAQAQREAA 205 Query: 325 AEYQKLLAQRLKEQRDRRSESMAKRRSKLSA 233 AEY +LLA+RL E++ ++E +R S L A Sbjct: 206 AEYAQLLAKRLTEKKAEKAEERKRRASSLKA 236
>RS6_BRAFL (O01727) 40S ribosomal protein S6| Length = 244 Score = 59.7 bits (143), Expect = 4e-09 Identities = 41/88 (46%), Positives = 48/88 (54%), Gaps = 1/88 (1%) Frame = -3 Query: 505 KDDDVRSYVNTYRRTFLNKKGKKVS-KAPKIQRLVTPLTLQXXXXXXXXXXXXXXXXKSE 329 K+DDVR YV RR K+GKK K PKIQRL+TP LQ + E Sbjct: 149 KEDDVRQYV--VRRPLPQKEGKKQKFKTPKIQRLITPQRLQRKRHMRAVKRRRYAKQREE 206 Query: 328 AAEYQKLLAQRLKEQRDRRSESMAKRRS 245 A Y KLLA+R KE+R E+ AKRRS Sbjct: 207 EATYAKLLAKRKKEER----EAHAKRRS 230
>RS6_CANGA (Q6FJH3) 40S ribosomal protein S6| Length = 236 Score = 59.3 bits (142), Expect = 6e-09 Identities = 37/91 (40%), Positives = 50/91 (54%) Frame = -3 Query: 505 KDDDVRSYVNTYRRTFLNKKGKKVSKAPKIQRLVTPLTLQXXXXXXXXXXXXXXXXKSEA 326 K+DDVR +V R + K K +KAPKIQRLVTP LQ + A Sbjct: 149 KEDDVRDFVI---RREVTKGEKTYTKAPKIQRLVTPQRLQRKRYQRNLKVRNAQAQREAA 205 Query: 325 AEYQKLLAQRLKEQRDRRSESMAKRRSKLSA 233 AEY +LLA+RL E++ ++E+ +R S L A Sbjct: 206 AEYAQLLAKRLAERKAEKAETRKRRASSLKA 236
>RS6B_SCHPO (Q9C0Z7) 40S ribosomal protein S6-B| Length = 239 Score = 58.9 bits (141), Expect = 8e-09 Identities = 36/90 (40%), Positives = 51/90 (56%), Gaps = 1/90 (1%) Frame = -3 Query: 505 KDDDVRSYVNTYRRTFLNKKGKK-VSKAPKIQRLVTPLTLQXXXXXXXXXXXXXXXXKSE 329 K+DDVR +V R K+GKK +KAPKIQRLVTP TLQ + E Sbjct: 149 KEDDVRQFV-IRREVVPKKEGKKPYTKAPKIQRLVTPRTLQHKRHRFALKRRQAEKNREE 207 Query: 328 AAEYQKLLAQRLKEQRDRRSESMAKRRSKL 239 AAE+ +L+A+R+ E + ++ A+R S + Sbjct: 208 AAEFAQLMAKRVAEAKQKKEVVKARRASSM 237
>RS6_YEAST (P02365) 40S ribosomal protein S6 (S10) (YS4) (RP9)| Length = 236 Score = 58.9 bits (141), Expect = 8e-09 Identities = 37/91 (40%), Positives = 49/91 (53%) Frame = -3 Query: 505 KDDDVRSYVNTYRRTFLNKKGKKVSKAPKIQRLVTPLTLQXXXXXXXXXXXXXXXXKSEA 326 K+DDVR +V R + K K +KAPKIQRLVTP LQ + A Sbjct: 149 KEDDVRDFVI---RREVTKGEKTYTKAPKIQRLVTPQRLQRKRHQRALKVRNAQAQREAA 205 Query: 325 AEYQKLLAQRLKEQRDRRSESMAKRRSKLSA 233 AEY +LLA+RL E++ ++E +R S L A Sbjct: 206 AEYAQLLAKRLSERKAEKAEIRKRRASSLKA 236
>RS6_KLUMA (P41798) 40S ribosomal protein S6 (Ribosomal protein S10)| Length = 235 Score = 57.8 bits (138), Expect = 2e-08 Identities = 40/92 (43%), Positives = 49/92 (53%) Frame = -3 Query: 505 KDDDVRSYVNTYRRTFLNKKGKKVSKAPKIQRLVTPLTLQXXXXXXXXXXXXXXXXKSEA 326 K+DDVR YV R + K K +KAPKIQRLVTP LQ + A Sbjct: 149 KEDDVRDYVI---RREVTKGEKTYTKAPKIQRLVTPQRLQRKRQQKALKIKNAQAQREAA 205 Query: 325 AEYQKLLAQRLKEQRDRRSESMAKRRSKLSAA 230 AEY +LLA+RL E R++E +R S L AA Sbjct: 206 AEYAQLLAKRLAE---RKAEVRKRRASSLKAA 234
>RS6_AEDAL (Q9U762) 40S ribosomal protein S6| Length = 349 Score = 56.2 bits (134), Expect = 5e-08 Identities = 36/92 (39%), Positives = 48/92 (52%), Gaps = 1/92 (1%) Frame = -3 Query: 505 KDDDVRSYVNTYRRTFLNKKGKKV-SKAPKIQRLVTPLTLQXXXXXXXXXXXXXXXXKSE 329 K+DDVR YV +R K GKK +KAPKIQRL+TP+ LQ K Sbjct: 149 KEDDVRQYV--VKRPLPEKDGKKPRTKAPKIQRLITPVVLQRKRHRLAIKKRRVESRKEA 206 Query: 328 AAEYQKLLAQRLKEQRDRRSESMAKRRSKLSA 233 AEY K+L R +++R RR ++ R S+ Sbjct: 207 EAEYMKILHLRRRQERIRRRSRLSSMRDSRSS 238
>RS6_AEDAE (Q9U761) 40S ribosomal protein S6| Length = 346 Score = 55.5 bits (132), Expect = 8e-08 Identities = 35/92 (38%), Positives = 48/92 (52%), Gaps = 1/92 (1%) Frame = -3 Query: 505 KDDDVRSYVNTYRRTFLNKKGKKV-SKAPKIQRLVTPLTLQXXXXXXXXXXXXXXXXKSE 329 K+DDVR +V +R K GKK +KAPKIQRL+TP+ LQ K Sbjct: 149 KEDDVRQFV--VKRPLPEKDGKKARTKAPKIQRLITPVVLQRKRHRLAIKKRRVESRKEA 206 Query: 328 AAEYQKLLAQRLKEQRDRRSESMAKRRSKLSA 233 AEY K+L R +++R RR ++ R S+ Sbjct: 207 EAEYMKILHLRRRQERIRRRSRLSSMRDSRSS 238
>RS6_CAEEL (Q9NEN6) 40S ribosomal protein S6| Length = 246 Score = 51.2 bits (121), Expect = 2e-06 Identities = 34/90 (37%), Positives = 47/90 (52%) Frame = -3 Query: 505 KDDDVRSYVNTYRRTFLNKKGKKVSKAPKIQRLVTPLTLQXXXXXXXXXXXXXXXXKSEA 326 K DDV YV T+ +TF + K + APKIQRL+TP + + +A Sbjct: 149 KHDDVTKYVITHDKTFPDGVTKTI--APKIQRLITPARIARKKYLLRQKRNQKIKMRDDA 206 Query: 325 AEYQKLLAQRLKEQRDRRSESMAKRRSKLS 236 A Y KLLA+ KE+ D + +A+RRS S Sbjct: 207 AAYHKLLAKYSKEEHDAK---IARRRSSAS 233
>RS6_LEIIN (O44012) 40S ribosomal protein S6| Length = 249 Score = 41.2 bits (95), Expect = 0.002 Identities = 30/99 (30%), Positives = 47/99 (47%), Gaps = 5/99 (5%) Frame = -3 Query: 505 KDDDVRSYVNTYRRTFLNKKGKKVSKAPKIQRLVTPLTLQXXXXXXXXXXXXXXXXKSEA 326 + +DVR YV RR + K KAPKIQRL+TP +E Sbjct: 152 RTEDVRKYV--VRRRVVKSGKKDRLKAPKIQRLITPRVKARRAKKAKDAIAKVRASAAER 209 Query: 325 AEYQKLLA--QRLKEQRD---RRSESMAKRRSKLSAATK 224 EY +L+A +R QRD + ++ + +R++++A K Sbjct: 210 REYLRLIASNRRALRQRDHSKKHTQKVHAQRAEVAAFQK 248
>RS6_LEIMA (Q9NE83) 40S ribosomal protein S6| Length = 249 Score = 40.8 bits (94), Expect = 0.002 Identities = 31/99 (31%), Positives = 45/99 (45%), Gaps = 5/99 (5%) Frame = -3 Query: 505 KDDDVRSYVNTYRRTFLNKKGKKVSKAPKIQRLVTPLTLQXXXXXXXXXXXXXXXXKSEA 326 + +DVR YV RR + K KAPKIQRL+TP +E Sbjct: 152 RTEDVRKYV--VRRRVVKSGKKDRLKAPKIQRLITPRVKARRAKKAKDAIAKVRASAAER 209 Query: 325 AEYQKLLA--QRLKEQRDRRSESMAK---RRSKLSAATK 224 EY +L+A +R QRD + K +R++++A K Sbjct: 210 REYLRLIASNRRALRQRDHSKKHTRKVHAQRAEVAAFQK 248
>ERCC5_HUMAN (P28715) DNA-repair protein complementing XP-G cells (Xeroderma| pigmentosum group G-complementing protein) (DNA excision repair protein ERCC-5) Length = 1186 Score = 29.6 bits (65), Expect = 5.0 Identities = 20/59 (33%), Positives = 32/59 (54%) Frame = -3 Query: 325 AEYQKLLAQRLKEQRDRRSESMAKRRSKLSAATKAPAVSA*DVYSLSLLIIMAKEFQAL 149 A+ +K A+R+K QR R+ + R+ K +AA++ AVS + M KEF+ L Sbjct: 1000 AQQEKEDAKRIKSQRLNRAVTCMLRKEKEAAASEIEAVS----------VAMEKEFELL 1048
>M22_STRPY (P50469) M protein, serotype 2.2 precursor| Length = 372 Score = 29.6 bits (65), Expect = 5.0 Identities = 20/42 (47%), Positives = 28/42 (66%), Gaps = 3/42 (7%) Frame = -3 Query: 331 EAAEYQ-KLLAQ--RLKEQRDRRSESMAKRRSKLSAATKAPA 215 E AE Q KL AQ LKEQ +++E +AK R++ +A +K PA Sbjct: 269 EKAELQAKLDAQGKALKEQLAKQTEELAKLRAEKAAGSKTPA 310
>DCTN4_RAT (Q9QUR2) Dynactin subunit 4 (Dynactin subunit p62)| Length = 467 Score = 29.6 bits (65), Expect = 5.0 Identities = 17/45 (37%), Positives = 26/45 (57%) Frame = -3 Query: 322 EYQKLLAQRLKEQRDRRSESMAKRRSKLSAATKAPAVSA*DVYSL 188 EY + LAQ+ K +RDR+ +A+RR+ + A + D YSL Sbjct: 149 EYYQQLAQKEKVERDRKK--LARRRNYMPLAFSQHTIHVVDKYSL 191
>DCTN4_MOUSE (Q8CBY8) Dynactin subunit 4 (Dynactin subunit p62)| Length = 467 Score = 29.6 bits (65), Expect = 5.0 Identities = 17/45 (37%), Positives = 26/45 (57%) Frame = -3 Query: 322 EYQKLLAQRLKEQRDRRSESMAKRRSKLSAATKAPAVSA*DVYSL 188 EY + LAQ+ K +RDR+ +A+RR+ + A + D YSL Sbjct: 149 EYYQQLAQKEKVERDRKK--LARRRNYMPLAFSQHTIHVVDKYSL 191
>MX_STRP9 (P16946) Virulence factor-related M protein precursor| Length = 369 Score = 29.6 bits (65), Expect = 5.0 Identities = 20/42 (47%), Positives = 28/42 (66%), Gaps = 3/42 (7%) Frame = -3 Query: 331 EAAEYQ-KLLAQ--RLKEQRDRRSESMAKRRSKLSAATKAPA 215 E AE Q KL AQ LKEQ +++E +AK R++ +A +K PA Sbjct: 266 EKAELQAKLDAQGKALKEQLAKQTEELAKLRAEKAAGSKTPA 307
>PEPF_MYCPN (P54125) Oligoendopeptidase F homolog (EC 3.4.24.-)| Length = 611 Score = 29.3 bits (64), Expect = 6.5 Identities = 19/63 (30%), Positives = 26/63 (41%) Frame = +1 Query: 70 GTMFTQNSINYNSTTLKVAARFISSNKVLETLSPL*LITKDCKHLKQRQPEPWWQQTAST 249 GT+ + +S L RF+SS L L + L+ D QPEPW + A Sbjct: 538 GTLVGKKLSAGDSNMLAAYKRFLSSGSTLPPLETIKLLGIDLT-----QPEPWQEAHAEL 592 Query: 250 SSW 258 W Sbjct: 593 KRW 595
>R1AB_PEDV7 (Q91AV2) Replicase polyprotein 1ab (pp1ab) (ORF1ab polyprotein)| [Includes: Replicase polyprotein 1a (pp1a) (ORF1a)] [Contains: p9; p87; p195 (EC 3.4.22.-) (Papain-like proteinases 1/2) (PL1-PRO/PL2-PRO); Peptide HD2; Unknown protein 1; 3C-like Length = 6781 Score = 29.3 bits (64), Expect = 6.5 Identities = 12/28 (42%), Positives = 19/28 (67%) Frame = -3 Query: 487 SYVNTYRRTFLNKKGKKVSKAPKIQRLV 404 +Y +TY TFL+ KV++ PKI++ V Sbjct: 179 TYCSTYEHTFLDGTAMKVARTPKIKKNV 206 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 51,340,846 Number of Sequences: 219361 Number of extensions: 716236 Number of successful extensions: 2204 Number of sequences better than 10.0: 37 Number of HSP's better than 10.0 without gapping: 2146 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2196 length of database: 80,573,946 effective HSP length: 104 effective length of database: 57,760,402 effective search space used: 3754426130 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
