ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart16h06
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|U43495.1|HVU43495 Hordeum vulgare jasmonate-induced mRNA, par... 948 0.0
2ref|XM_475910.1| Oryza sativa (japonica cultivar-group), predic... 115 1e-22
3gb|AC104284.2| Oryza sativa (japonica cultivar-group) chromosome... 115 1e-22
4gb|AC098832.3| Oryza sativa (japonica cultivar-group) chromosome... 115 1e-22
5dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 115 1e-22
6dbj|AK106699.1| Oryza sativa (japonica cultivar-group) cDNA clon... 115 1e-22
7ref|NM_192393.1| Oryza sativa (japonica cultivar-group), predic... 78 3e-11
8dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 78 3e-11
9dbj|AP003710.3| Oryza sativa (japonica cultivar-group) genomic D... 78 3e-11
10ref|XM_475909.1| Oryza sativa (japonica cultivar-group), predic... 62 2e-06
11ref|NM_192379.1| Oryza sativa (japonica cultivar-group), predic... 52 0.002
12dbj|AP003792.4| Oryza sativa (japonica cultivar-group) genomic D... 52 0.002
13dbj|AK102737.1| Oryza sativa (japonica cultivar-group) cDNA clon... 52 0.002
14ref|XM_470493.1| Oryza sativa (japonica cultivar-group), mRNA 42 1.7
15gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 42 1.7
16gb|AC096690.5| Oryza sativa chromosome 3 BAC OSJNBa0059G06 genom... 42 1.7
17dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.7
18dbj|AK102968.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 1.7
19dbj|AK063136.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 1.7
20gb|AC166821.2| Mus musculus BAC clone RP24-68F22 from chromosome... 40 6.6
21ref|NM_192374.1| Oryza sativa (japonica cultivar-group), predic... 40 6.6
22ref|NM_192373.1| Oryza sativa (japonica cultivar-group), predic... 40 6.6
23gb|CP000359.1| Deinococcus geothermalis DSM 11300, complete genome 40 6.6
24emb|AL354706.11| Human DNA sequence from clone RP11-229I7 on chr... 40 6.6
25emb|AL603702.14| Mouse DNA sequence from clone RP23-406A14 on ch... 40 6.6
26gb|AF403051.1|AF403051 Pseudorabies virus strain Fa glycoprotein... 40 6.6
27tpg|BK001744.1| TPA: TPA_exp: Suid herpesvirus 1, complete genome 40 6.6
28gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome 40 6.6
29gb|AF158090.1|AF158090 Pseudorabies virus glycoprotein C (gC) ge... 40 6.6
30emb|CR388379.15| Zebrafish DNA sequence from clone CH211-129O15,... 40 6.6
31gb|CP000155.1| Hahella chejuensis KCTC 2396, complete genome 40 6.6
32gb|M12778.1|SH1GGIII Pseudorabies virus (PRV) glycoprotein gIII ... 40 6.6
33dbj|D49437.1|SH1GGIII3 Pseudorabies virus DNA for glycoprotein g... 40 6.6
34dbj|D49436.1|SH1GGIII2 Pseudorabies virus DNA for glycoprotein g... 40 6.6
35dbj|D49435.1|SH1GGIII1 Pseudorabies virus DNA for glycoprotein g... 40 6.6 
>gb|U43495.1|HVU43495 Hordeum vulgare jasmonate-induced mRNA, partial 3' sequence
          Length = 779

 Score =  948 bits (478), Expect = 0.0
 Identities = 488/490 (99%), Gaps = 1/490 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   ccatcatattcatgtgtcgctcatgcatagtgtatattgttggaaacattcacttatttt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 761 ccatcatattcatgtgtcgctcatgcatagtgtatattgttggaaacattcacttatttt 702

                                                                       
Query: 61  gcataaaatggggaatatactaggaacggtcgacaaaccgtaagccgttatttagaacct 120
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 701 gcataaaatgggaaatatactaggaacggtcgacaaaccgtaagccgttatttagaacct 642

                                                                       
Query: 121 cggtcttggcaacgagcacagcgccgtgaatcacatcaacgcccactctcctcctagtga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 641 cggtcttggcaacgagcacagcgccgtgaatcacatcaacgcccactctcctcctagtga 582

                                                                       
Query: 181 atggccgatgcgagtaacttaacttagatgtgcttgaagtcctggagcgtccatcgccca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 581 atggccgatgcgagtaacttaacttagatgtgcttgaagtcctggagcgtccatcgccca 522

                                                                       
Query: 241 tctccccccttgaccatgaacttgtgcttcggcacccaccagctcgccggcaccgggtgc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 521 tctccccccttgaccatgaacttgtgcttcggcacccaccagctcgccggcaccgggtgc 462

                                                                       
Query: 301 tcgtccgcgagcgcatcggcacccttgttcaccagcgctatgtcacggtccacctcgagc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 461 tcgtccgcgagcgcatcggcacccttgttcaccagcgctatgtcacggtccacctcgagc 402

                                                                       
Query: 361 ttgaaccctccggcactgccctgctccccggccaccccgtgcaggtagcactcgaggttg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 401 ttgaaccctccggcactgccctgctccccggccaccccgtgcaggtagcactcgaggttg 342

                                                                       
Query: 421 tggagcgtccccaccgtggccggcacacgcaggtacggcgaccggattgtcgttatggtc 480
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 341 tggagcgtcccca-cgtggccggcacacgcaggtacggcgaccggattgtcgttatggtc 283

                     
Query: 481 agctgcacgg 490
           ||||||||||
Sbjct: 282 agctgcacgg 273
to top
>ref|XM_475910.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1224

 Score =  115 bits (58), Expect = 1e-22
 Identities = 151/182 (82%)
 Strand = Plus / Minus

                                                                        
Query: 248  ccttgaccatgaacttgtgcttcggcacccaccagctcgccggcaccgggtgctcgtccg 307
            ||||||||||| || ||| ||| |  |||||||| |  | |||||| |||| || |||| 
Sbjct: 1180 ccttgaccatgcacctgttcttggagacccaccaccggggcggcacggggtacttgtcct 1121

                                                                        
Query: 308  cgagcgcatcggcacccttgttcaccagcgctatgtcacggtccacctcgagcttgaacc 367
             |||||| ||| | ||||||||| ||||||| | ||| ||||| ||||| ||||||||||
Sbjct: 1120 tgagcgcgtcgacgcccttgttcgccagcgcgacgtcgcggtcgacctccagcttgaacc 1061

                                                                        
Query: 368  ctccggcactgccctgctccccggccaccccgtgcaggtagcactcgaggttgtggagcg 427
            | ||||| ||||||||||| ||||| || ||||| |||||||||||||||||||| ||||
Sbjct: 1060 cgccggcgctgccctgctcgccggcgacgccgtggaggtagcactcgaggttgtgcagcg 1001

              
Query: 428  tc 429
            ||
Sbjct: 1000 tc 999
to top
>gb|AC104284.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1735_C10,
              complete sequence
          Length = 187034

 Score =  115 bits (58), Expect = 1e-22
 Identities = 151/182 (82%)
 Strand = Plus / Plus

                                                                          
Query: 248    ccttgaccatgaacttgtgcttcggcacccaccagctcgccggcaccgggtgctcgtccg 307
              ||||||||||| || ||| ||| |  |||||||| |  | |||||| |||| || |||| 
Sbjct: 163111 ccttgaccatgcacctgttcttggagacccaccaccggggcggcacggggtacttgtcct 163170

                                                                          
Query: 308    cgagcgcatcggcacccttgttcaccagcgctatgtcacggtccacctcgagcttgaacc 367
               |||||| ||| | ||||||||| ||||||| | ||| ||||| ||||| ||||||||||
Sbjct: 163171 tgagcgcgtcgacgcccttgttcgccagcgcgacgtcgcggtcgacctccagcttgaacc 163230

                                                                          
Query: 368    ctccggcactgccctgctccccggccaccccgtgcaggtagcactcgaggttgtggagcg 427
              | ||||| ||||||||||| ||||| || ||||| |||||||||||||||||||| ||||
Sbjct: 163231 cgccggcgctgccctgctcgccggcgacgccgtggaggtagcactcgaggttgtgcagcg 163290

                
Query: 428    tc 429
              ||
Sbjct: 163291 tc 163292



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 34/35 (97%)
 Strand = Plus / Minus

                                                 
Query: 388    ccggccaccccgtgcaggtagcactcgaggttgtg 422
              |||||||| ||||||||||||||||||||||||||
Sbjct: 162599 ccggccacgccgtgcaggtagcactcgaggttgtg 162565
to top
>gb|AC098832.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1268_B08,
             complete sequence
          Length = 119500

 Score =  115 bits (58), Expect = 1e-22
 Identities = 151/182 (82%)
 Strand = Plus / Plus

                                                                         
Query: 248   ccttgaccatgaacttgtgcttcggcacccaccagctcgccggcaccgggtgctcgtccg 307
             ||||||||||| || ||| ||| |  |||||||| |  | |||||| |||| || |||| 
Sbjct: 13793 ccttgaccatgcacctgttcttggagacccaccaccggggcggcacggggtacttgtcct 13852

                                                                         
Query: 308   cgagcgcatcggcacccttgttcaccagcgctatgtcacggtccacctcgagcttgaacc 367
              |||||| ||| | ||||||||| ||||||| | ||| ||||| ||||| ||||||||||
Sbjct: 13853 tgagcgcgtcgacgcccttgttcgccagcgcgacgtcgcggtcgacctccagcttgaacc 13912

                                                                         
Query: 368   ctccggcactgccctgctccccggccaccccgtgcaggtagcactcgaggttgtggagcg 427
             | ||||| ||||||||||| ||||| || ||||| |||||||||||||||||||| ||||
Sbjct: 13913 cgccggcgctgccctgctcgccggcgacgccgtggaggtagcactcgaggttgtgcagcg 13972

               
Query: 428   tc 429
             ||
Sbjct: 13973 tc 13974



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 34/35 (97%)
 Strand = Plus / Minus

                                                
Query: 388   ccggccaccccgtgcaggtagcactcgaggttgtg 422
             |||||||| ||||||||||||||||||||||||||
Sbjct: 13281 ccggccacgccgtgcaggtagcactcgaggttgtg 13247
to top
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score =  115 bits (58), Expect = 1e-22
 Identities = 151/182 (82%)
 Strand = Plus / Plus

                                                                            
Query: 248      ccttgaccatgaacttgtgcttcggcacccaccagctcgccggcaccgggtgctcgtccg 307
                ||||||||||| || ||| ||| |  |||||||| |  | |||||| |||| || |||| 
Sbjct: 28378869 ccttgaccatgcacctgttcttggagacccaccaccggggcggcacggggtacttgtcct 28378928

                                                                            
Query: 308      cgagcgcatcggcacccttgttcaccagcgctatgtcacggtccacctcgagcttgaacc 367
                 |||||| ||| | ||||||||| ||||||| | ||| ||||| ||||| ||||||||||
Sbjct: 28378929 tgagcgcgtcgacgcccttgttcgccagcgcgacgtcgcggtcgacctccagcttgaacc 28378988

                                                                            
Query: 368      ctccggcactgccctgctccccggccaccccgtgcaggtagcactcgaggttgtggagcg 427
                | ||||| ||||||||||| ||||| || ||||| |||||||||||||||||||| ||||
Sbjct: 28378989 cgccggcgctgccctgctcgccggcgacgccgtggaggtagcactcgaggttgtgcagcg 28379048

                  
Query: 428      tc 429
                ||
Sbjct: 28379049 tc 28379050



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 34/35 (97%)
 Strand = Plus / Minus

                                                   
Query: 388      ccggccaccccgtgcaggtagcactcgaggttgtg 422
                |||||||| ||||||||||||||||||||||||||
Sbjct: 28378357 ccggccacgccgtgcaggtagcactcgaggttgtg 28378323
to top
>dbj|AK106699.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-114-E01, full
            insert sequence
          Length = 1526

 Score =  115 bits (58), Expect = 1e-22
 Identities = 151/182 (82%)
 Strand = Plus / Minus

                                                                        
Query: 248  ccttgaccatgaacttgtgcttcggcacccaccagctcgccggcaccgggtgctcgtccg 307
            ||||||||||| || ||| ||| |  |||||||| |  | |||||| |||| || |||| 
Sbjct: 1264 ccttgaccatgcacctgttcttggagacccaccaccggggcggcacggggtacttgtcct 1205

                                                                        
Query: 308  cgagcgcatcggcacccttgttcaccagcgctatgtcacggtccacctcgagcttgaacc 367
             |||||| ||| | ||||||||| ||||||| | ||| ||||| ||||| ||||||||||
Sbjct: 1204 tgagcgcgtcgacgcccttgttcgccagcgcgacgtcgcggtcgacctccagcttgaacc 1145

                                                                        
Query: 368  ctccggcactgccctgctccccggccaccccgtgcaggtagcactcgaggttgtggagcg 427
            | ||||| ||||||||||| ||||| || ||||| |||||||||||||||||||| ||||
Sbjct: 1144 cgccggcgctgccctgctcgccggcgacgccgtggaggtagcactcgaggttgtgcagcg 1085

              
Query: 428  tc 429
            ||
Sbjct: 1084 tc 1083
to top
>ref|NM_192393.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1458

 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 84/99 (84%)
 Strand = Plus / Minus

                                                                        
Query: 324  cttgttcaccagcgctatgtcacggtccacctcgagcttgaaccctccggcactgccctg 383
            ||||||||||||||| | ||| ||||| ||||| ||||||||||| |||    |||||||
Sbjct: 1320 cttgttcaccagcgccacgtcccggtcgacctccagcttgaacccgccgcgcttgccctg 1261

                                                   
Query: 384  ctccccggccaccccgtgcaggtagcactcgaggttgtg 422
            | ||||||| || ||||||| ||||||||||||| ||||
Sbjct: 1260 cgccccggcgacgccgtgcatgtagcactcgaggctgtg 1222
to top
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 84/99 (84%)
 Strand = Plus / Plus

                                                                            
Query: 324      cttgttcaccagcgctatgtcacggtccacctcgagcttgaaccctccggcactgccctg 383
                ||||||||||||||| | ||| ||||| ||||| ||||||||||| |||    |||||||
Sbjct: 26377149 cttgttcaccagcgccacgtcccggtcgacctccagcttgaacccgccgcgcttgccctg 26377208

                                                       
Query: 384      ctccccggccaccccgtgcaggtagcactcgaggttgtg 422
                | ||||||| || ||||||| ||||||||||||| ||||
Sbjct: 26377209 cgccccggcgacgccgtgcatgtagcactcgaggctgtg 26377247



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 59/70 (84%)
 Strand = Plus / Minus

                                                                            
Query: 285      cgccggcaccgggtgctcgtccgcgagcgcatcggcacccttgttcaccagcgctatgtc 344
                |||||||||| ||| |||||||  |||||| ||  |  |||||||||||||||| | |||
Sbjct: 26317752 cgccggcacctggtactcgtccctgagcgcgtccacttccttgttcaccagcgccaggtc 26317693

                          
Query: 345      acggtccacc 354
                ||||||||||
Sbjct: 26317692 acggtccacc 26317683



 Score = 50.1 bits (25), Expect = 0.007
 Identities = 25/25 (100%)
 Strand = Plus / Minus

                                         
Query: 398      cgtgcaggtagcactcgaggttgtg 422
                |||||||||||||||||||||||||
Sbjct: 26317633 cgtgcaggtagcactcgaggttgtg 26317609



 Score = 40.1 bits (20), Expect = 6.6
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                                
Query: 387      cccggccaccccgtgcaggtagcactcgaggt 418
                |||||| || |||||||||| |||||||||||
Sbjct: 26295965 cccggcgacgccgtgcaggtggcactcgaggt 26295934



 Score = 40.1 bits (20), Expect = 6.6
 Identities = 47/56 (83%)
 Strand = Plus / Minus

                                                                        
Query: 358      agcttgaaccctccggcactgccctgctccccggccaccccgtgcaggtagcactc 413
                |||||||||||||||   || ||||||  |||||| ||||| |||| |||||||||
Sbjct: 26291708 agcttgaaccctccgttgctcccctgcgtcccggcaaccccatgcatgtagcactc 26291653
to top
>dbj|AP003710.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:OSJNBb0032K15
          Length = 126195

 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 84/99 (84%)
 Strand = Plus / Plus

                                                                         
Query: 324   cttgttcaccagcgctatgtcacggtccacctcgagcttgaaccctccggcactgccctg 383
             ||||||||||||||| | ||| ||||| ||||| ||||||||||| |||    |||||||
Sbjct: 51014 cttgttcaccagcgccacgtcccggtcgacctccagcttgaacccgccgcgcttgccctg 51073

                                                    
Query: 384   ctccccggccaccccgtgcaggtagcactcgaggttgtg 422
             | ||||||| || ||||||| ||||||||||||| ||||
Sbjct: 51074 cgccccggcgacgccgtgcatgtagcactcgaggctgtg 51112
to top
>ref|XM_475909.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1236

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 34/35 (97%)
 Strand = Plus / Minus

                                               
Query: 388  ccggccaccccgtgcaggtagcactcgaggttgtg 422
            |||||||| ||||||||||||||||||||||||||
Sbjct: 1034 ccggccacgccgtgcaggtagcactcgaggttgtg 1000
to top
>ref|NM_192379.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1263

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 59/70 (84%)
 Strand = Plus / Minus

                                                                        
Query: 285  cgccggcaccgggtgctcgtccgcgagcgcatcggcacccttgttcaccagcgctatgtc 344
            |||||||||| ||| |||||||  |||||| ||  |  |||||||||||||||| | |||
Sbjct: 1170 cgccggcacctggtactcgtccctgagcgcgtccacttccttgttcaccagcgccaggtc 1111

                      
Query: 345  acggtccacc 354
            ||||||||||
Sbjct: 1110 acggtccacc 1101



 Score = 50.1 bits (25), Expect = 0.007
 Identities = 25/25 (100%)
 Strand = Plus / Minus

                                     
Query: 398  cgtgcaggtagcactcgaggttgtg 422
            |||||||||||||||||||||||||
Sbjct: 1051 cgtgcaggtagcactcgaggttgtg 1027
to top
>dbj|AP003792.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
              clone:OJ1159_D09
          Length = 147770

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 59/70 (84%)
 Strand = Plus / Minus

                                                                          
Query: 285    cgccggcaccgggtgctcgtccgcgagcgcatcggcacccttgttcaccagcgctatgtc 344
              |||||||||| ||| |||||||  |||||| ||  |  |||||||||||||||| | |||
Sbjct: 130433 cgccggcacctggtactcgtccctgagcgcgtccacttccttgttcaccagcgccaggtc 130374

                        
Query: 345    acggtccacc 354
              ||||||||||
Sbjct: 130373 acggtccacc 130364



 Score = 50.1 bits (25), Expect = 0.007
 Identities = 25/25 (100%)
 Strand = Plus / Minus

                                       
Query: 398    cgtgcaggtagcactcgaggttgtg 422
              |||||||||||||||||||||||||
Sbjct: 130314 cgtgcaggtagcactcgaggttgtg 130290



 Score = 40.1 bits (20), Expect = 6.6
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                              
Query: 387    cccggccaccccgtgcaggtagcactcgaggt 418
              |||||| || |||||||||| |||||||||||
Sbjct: 108646 cccggcgacgccgtgcaggtggcactcgaggt 108615



 Score = 40.1 bits (20), Expect = 6.6
 Identities = 47/56 (83%)
 Strand = Plus / Minus

                                                                      
Query: 358    agcttgaaccctccggcactgccctgctccccggccaccccgtgcaggtagcactc 413
              |||||||||||||||   || ||||||  |||||| ||||| |||| |||||||||
Sbjct: 104389 agcttgaaccctccgttgctcccctgcgtcccggcaaccccatgcatgtagcactc 104334
to top
>dbj|AK102737.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033106C14, full
            insert sequence
          Length = 1577

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 59/70 (84%)
 Strand = Plus / Minus

                                                                        
Query: 285  cgccggcaccgggtgctcgtccgcgagcgcatcggcacccttgttcaccagcgctatgtc 344
            |||||||||| ||| |||||||  |||||| ||  |  |||||||||||||||| | |||
Sbjct: 1302 cgccggcacctggtactcgtccctgagcgcgtccacttccttgttcaccagcgccaggtc 1243

                      
Query: 345  acggtccacc 354
            ||||||||||
Sbjct: 1242 acggtccacc 1233



 Score = 50.1 bits (25), Expect = 0.007
 Identities = 25/25 (100%)
 Strand = Plus / Minus

                                     
Query: 398  cgtgcaggtagcactcgaggttgtg 422
            |||||||||||||||||||||||||
Sbjct: 1183 cgtgcaggtagcactcgaggttgtg 1159
to top
>ref|XM_470493.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1724

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 231 ccatcgcccatctcccccctt 251
           |||||||||||||||||||||
Sbjct: 176 ccatcgcccatctcccccctt 196
to top
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 231      ccatcgcccatctcccccctt 251
                |||||||||||||||||||||
Sbjct: 35925005 ccatcgcccatctcccccctt 35925025
to top
>gb|AC096690.5| Oryza sativa chromosome 3 BAC OSJNBa0059G06 genomic sequence, complete
             sequence
          Length = 145115

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 231   ccatcgcccatctcccccctt 251
             |||||||||||||||||||||
Sbjct: 36120 ccatcgcccatctcccccctt 36100
to top
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 231      ccatcgcccatctcccccctt 251
                |||||||||||||||||||||
Sbjct: 36015135 ccatcgcccatctcccccctt 36015155
to top
>dbj|AK102968.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033115J18, full
           insert sequence
          Length = 1749

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 231 ccatcgcccatctcccccctt 251
           |||||||||||||||||||||
Sbjct: 196 ccatcgcccatctcccccctt 216
to top
>dbj|AK063136.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-111-G02, full
           insert sequence
          Length = 705

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 39/45 (86%)
 Strand = Plus / Minus

                                                        
Query: 324 cttgttcaccagcgctatgtcacggtccacctcgagcttgaaccc 368
           ||||||||||||| | | ||| ||||| ||||| |||||||||||
Sbjct: 409 cttgttcaccagctccacgtcccggtcgacctccagcttgaaccc 365
to top
>gb|AC166821.2| Mus musculus BAC clone RP24-68F22 from chromosome 17, complete sequence
          Length = 202649

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 420    gtggagcgtccccaccgtgg 439
              ||||||||||||||||||||
Sbjct: 103310 gtggagcgtccccaccgtgg 103291
to top
>ref|NM_192374.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1212

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                            
Query: 387  cccggccaccccgtgcaggtagcactcgaggt 418
            |||||| || |||||||||| |||||||||||
Sbjct: 1002 cccggcgacgccgtgcaggtggcactcgaggt 971
to top
>ref|NM_192373.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1197

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 47/56 (83%)
 Strand = Plus / Minus

                                                                    
Query: 358  agcttgaaccctccggcactgccctgctccccggccaccccgtgcaggtagcactc 413
            |||||||||||||||   || ||||||  |||||| ||||| |||| |||||||||
Sbjct: 1040 agcttgaaccctccgttgctcccctgcgtcccggcaaccccatgcatgtagcactc 985
to top
>gb|CP000359.1| Deinococcus geothermalis DSM 11300, complete genome
          Length = 2467205

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 365    accctccggcactgccctgc 384
              ||||||||||||||||||||
Sbjct: 882978 accctccggcactgccctgc 882959
to top
>emb|AL354706.11| Human DNA sequence from clone RP11-229I7 on chromosome 13, complete
             sequence
          Length = 96045

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 49    ttcacttattttgcataaaa 68
             ||||||||||||||||||||
Sbjct: 29584 ttcacttattttgcataaaa 29603
to top
>emb|AL603702.14| Mouse DNA sequence from clone RP23-406A14 on chromosome 11 Contains a
             protease (prosome, macropain) 26S subunit ATPase 1 (Psmc1)
             pseudogene and a CpG island, complete sequence
          Length = 197265

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 366   ccctccggcactgccctgctccccggcc 393
             ||||||| | ||||||||||||||||||
Sbjct: 31650 ccctccgcccctgccctgctccccggcc 31623
to top
>gb|AF403051.1|AF403051 Pseudorabies virus strain Fa glycoprotein C gene, complete cds
          Length = 1562

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 291 caccgggtgctcgtccgcga 310
           ||||||||||||||||||||
Sbjct: 916 caccgggtgctcgtccgcga 897
to top
>tpg|BK001744.1| TPA: TPA_exp: Suid herpesvirus 1, complete genome
          Length = 143461

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 291   caccgggtgctcgtccgcga 310
             ||||||||||||||||||||
Sbjct: 54862 caccgggtgctcgtccgcga 54843
to top
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome
          Length = 5013479

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 292     accgggtgctcgtccgcgag 311
               ||||||||||||||||||||
Sbjct: 4606525 accgggtgctcgtccgcgag 4606506
to top
>gb|AF158090.1|AF158090 Pseudorabies virus glycoprotein C (gC) gene, complete cds
          Length = 1755

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 291  caccgggtgctcgtccgcga 310
            ||||||||||||||||||||
Sbjct: 1059 caccgggtgctcgtccgcga 1040
to top
>emb|CR388379.15| Zebrafish DNA sequence from clone CH211-129O15, complete sequence
          Length = 149807

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 43     gaaacattcacttattttgc 62
              ||||||||||||||||||||
Sbjct: 101727 gaaacattcacttattttgc 101708
to top
>gb|CP000155.1| Hahella chejuensis KCTC 2396, complete genome
          Length = 7215267

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 176     agtgaatggccgatgcgagt 195
               ||||||||||||||||||||
Sbjct: 6301611 agtgaatggccgatgcgagt 6301630
to top
>gb|M12778.1|SH1GGIII Pseudorabies virus (PRV) glycoprotein gIII mRNA, complete cds
          Length = 1722

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 291  caccgggtgctcgtccgcga 310
            ||||||||||||||||||||
Sbjct: 1029 caccgggtgctcgtccgcga 1010
to top
>dbj|D49437.1|SH1GGIII3 Pseudorabies virus DNA for glycoprotein gIII, complete cds
          Length = 1584

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 291 caccgggtgctcgtccgcga 310
           ||||||||||||||||||||
Sbjct: 919 caccgggtgctcgtccgcga 900
to top
>dbj|D49436.1|SH1GGIII2 Pseudorabies virus DNA for glycoprotein gIII, complete cds
          Length = 1579

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 291 caccgggtgctcgtccgcga 310
           ||||||||||||||||||||
Sbjct: 916 caccgggtgctcgtccgcga 897
to top
>dbj|D49435.1|SH1GGIII1 Pseudorabies virus DNA for glycoprotein gIII, complete cds
          Length = 1584

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 291 caccgggtgctcgtccgcga 310
           ||||||||||||||||||||
Sbjct: 919 caccgggtgctcgtccgcga 900


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,957,149
Number of Sequences: 3902068
Number of extensions: 2957149
Number of successful extensions: 61215
Number of sequences better than 10.0: 35
Number of HSP's better than 10.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 60900
Number of HSP's gapped (non-prelim): 309
length of query: 490
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 468
effective length of database: 17,147,199,772
effective search space: 8024889493296
effective search space used: 8024889493296
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top