ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart16h04 |
|---|---|
| Clone Library Name | barley_pub |
>DFRA_DIACA (P51104) Dihydroflavonol-4-reductase (EC 1.1.1.219) (DFR)| (Dihydrokaempferol 4-reductase) Length = 360 Score = 37.7 bits (86), Expect = 0.014 Identities = 22/70 (31%), Positives = 40/70 (57%), Gaps = 5/70 (7%) Frame = -3 Query: 434 DLVEHYVDKHPELKLARK-----EVVGEGVRVQANTNKLVELGFKFKYGAKEVLDGTVDC 270 D+ + +++PE + K E +G+ VQ ++ KL +LGF+FKYG K++ V+ Sbjct: 278 DIAKMLREEYPEYNVPTKFKDYKEDMGQ---VQFSSKKLTDLGFEFKYGLKDMYTAAVES 334 Query: 269 GKKLGLLSVA 240 + GLL ++ Sbjct: 335 CRAKGLLPLS 344
>DFRA_VITVI (P51110) Dihydroflavonol-4-reductase (EC 1.1.1.219) (DFR)| (Dihydrokaempferol 4-reductase) Length = 337 Score = 37.4 bits (85), Expect = 0.018 Identities = 22/64 (34%), Positives = 38/64 (59%), Gaps = 2/64 (3%) Frame = -3 Query: 434 DLVEHYVDKHPELKLARK-EVVGEGVR-VQANTNKLVELGFKFKYGAKEVLDGTVDCGKK 261 DL + +K+PE + + + V E ++ V ++ KL +LGF+FKY +++ G VD + Sbjct: 262 DLAKMLREKYPEYNIPTEFKGVDENLKSVCFSSKKLTDLGFEFKYSLEDMFTGAVDTCRA 321 Query: 260 LGLL 249 GLL Sbjct: 322 KGLL 325
>DFRA_CALCH (P51103) Dihydroflavonol-4-reductase (EC 1.1.1.219) (DFR)| (Dihydrokaempferol 4-reductase) Length = 364 Score = 35.8 bits (81), Expect = 0.054 Identities = 14/36 (38%), Positives = 24/36 (66%) Frame = -3 Query: 356 VQANTNKLVELGFKFKYGAKEVLDGTVDCGKKLGLL 249 V ++ KL+++GFKFKY +++ G +D K+ G L Sbjct: 291 VSFSSKKLIDMGFKFKYDLEDMFKGAIDSCKEKGFL 326
>DFRA_GERHY (P51105) Dihydroflavonol-4-reductase (EC 1.1.1.219) (DFR)| (Dihydrokaempferol 4-reductase) Length = 366 Score = 34.7 bits (78), Expect = 0.12 Identities = 19/57 (33%), Positives = 32/57 (56%), Gaps = 2/57 (3%) Frame = -3 Query: 413 DKHPELKLARK--EVVGEGVRVQANTNKLVELGFKFKYGAKEVLDGTVDCGKKLGLL 249 DK PE + K + E V ++ KL++ GF+FKY +++ G +D ++ GLL Sbjct: 270 DKWPEYYIPTKFPGIDEELPIVSFSSKKLIDTGFEFKYNLEDMFKGAIDTCREKGLL 326
>BAN_ARATH (Q9SEV0) Leucoanthocyanidin reductase (EC 1.3.1.77) (LAR) (Protein| BANYULS) (Anthocyanin spotted testa) (ast) Length = 340 Score = 33.9 bits (76), Expect = 0.20 Identities = 14/68 (20%), Positives = 39/68 (57%), Gaps = 1/68 (1%) Frame = -3 Query: 449 HTNMQDLVEHYVDKHPELKLARKEVVGEGV-RVQANTNKLVELGFKFKYGAKEVLDGTVD 273 +T++ ++ + + ++P+ + + G + ++ ++ KL+ GF+F+YG E+ D ++ Sbjct: 270 NTSVPEIADFLIQRYPKYNVLSEFEEGLSIPKLTLSSQKLINEGFRFEYGINEMYDQMIE 329 Query: 272 CGKKLGLL 249 + GL+ Sbjct: 330 YFESKGLI 337
>DFRA_ARATH (P51102) Dihydroflavonol-4-reductase (EC 1.1.1.219) (DFR)| (Dihydrokaempferol 4-reductase) (TRANSPARENT TESTA 3 protein) Length = 382 Score = 32.0 bits (71), Expect = 0.78 Identities = 17/59 (28%), Positives = 35/59 (59%), Gaps = 2/59 (3%) Frame = -3 Query: 410 KHPELKLARK-EVVGEGVR-VQANTNKLVELGFKFKYGAKEVLDGTVDCGKKLGLLSVA 240 K+PE + E V E ++ ++ ++ KL ++GF FKY +E+ +++ ++ G L V+ Sbjct: 270 KYPEYNVPSTFEGVDENLKSIEFSSKKLTDMGFNFKYSLEEMFIESIETCRQKGFLPVS 328
>DFRA_PETHY (P14720) Dihydroflavonol-4-reductase (EC 1.1.1.219) (DFR)| (Dihydrokaempferol 4-reductase) Length = 380 Score = 30.0 bits (66), Expect = 2.9 Identities = 18/69 (26%), Positives = 36/69 (52%), Gaps = 2/69 (2%) Frame = -3 Query: 449 HTNMQDLVEHYVDKHPELKLAR--KEVVGEGVRVQANTNKLVELGFKFKYGAKEVLDGTV 276 H + D+ + +K PE + K + + V ++ KL ++GF+FKY +++ G + Sbjct: 267 HAIIYDVAKMVREKWPEYYVPTEFKGIDKDLPVVSFSSKKLTDMGFQFKYTLEDMYKGAI 326 Query: 275 DCGKKLGLL 249 D ++ LL Sbjct: 327 DTCRQKQLL 335
>RECA_CAUCR (Q9A9A7) Protein recA (Recombinase A)| Length = 356 Score = 30.0 bits (66), Expect = 2.9 Identities = 20/55 (36%), Positives = 27/55 (49%), Gaps = 5/55 (9%) Frame = -3 Query: 389 ARKEVVGEGVRVQANTNKLV----ELGFKFKYG-AKEVLDGTVDCGKKLGLLSVA 240 AR E+VG VRV+ NK+ E+ F YG L +D G K G++ A Sbjct: 244 ARDEIVGNNVRVKVVKNKVAPPFREVEFDIMYGEGISKLGEVIDLGVKAGIIDKA 298
>DFRA_ANTMA (P14721) Dihydroflavonol-4-reductase (EC 1.1.1.219) (DFR)| (Dihydrokaempferol 4-reductase) Length = 446 Score = 29.6 bits (65), Expect = 3.8 Identities = 11/36 (30%), Positives = 24/36 (66%) Frame = -3 Query: 356 VQANTNKLVELGFKFKYGAKEVLDGTVDCGKKLGLL 249 V ++ K++ +GF FKY ++++ G +D ++ G+L Sbjct: 302 VSFSSKKMIGMGFIFKYTLEDMVRGAIDTCREKGML 337
>SIPA_SALTY (Q56027) Cell invasion protein sipA (Effector protein sipA)| Length = 685 Score = 29.3 bits (64), Expect = 5.0 Identities = 20/63 (31%), Positives = 27/63 (42%), Gaps = 13/63 (20%) Frame = -3 Query: 416 VDKHPELKLARKEVVGEGVRVQANTNKLVELGFKF-------------KYGAKEVLDGTV 276 +DKHPELK A+ E + E + KL E+ +F Y VLDG + Sbjct: 593 IDKHPELK-AKMETLKEVITHHPQKEKLAEIALQFAREAGLTRLKGETDYVLSNVLDGLI 651 Query: 275 DCG 267 G Sbjct: 652 GDG 654
>SIPA_SALTI (P74849) Cell invasion protein sipA (Effector protein sipA)| Length = 685 Score = 29.3 bits (64), Expect = 5.0 Identities = 20/63 (31%), Positives = 27/63 (42%), Gaps = 13/63 (20%) Frame = -3 Query: 416 VDKHPELKLARKEVVGEGVRVQANTNKLVELGFKF-------------KYGAKEVLDGTV 276 +DKHPELK A+ E + E + KL E+ +F Y VLDG + Sbjct: 593 IDKHPELK-AKMETLKEVITHHPQKEKLAEIALQFAREAGLTRQKGETDYVLSNVLDGLI 651 Query: 275 DCG 267 G Sbjct: 652 GDG 654
>SIPA_SALEN (Q8VQB5) Cell invasion protein sipA (Effector protein sipA)| Length = 685 Score = 29.3 bits (64), Expect = 5.0 Identities = 20/63 (31%), Positives = 27/63 (42%), Gaps = 13/63 (20%) Frame = -3 Query: 416 VDKHPELKLARKEVVGEGVRVQANTNKLVELGFKF-------------KYGAKEVLDGTV 276 +DKHPELK A+ E + E + KL E+ +F Y VLDG + Sbjct: 593 IDKHPELK-AKMETLKEVITHHPQKEKLAEIALQFAREAGLTRLKGETDYVLSNVLDGLI 651 Query: 275 DCG 267 G Sbjct: 652 GDG 654
>NUAK1_MOUSE (Q641K5) NUAK family, SNF1-like kinase 1 (EC 2.7.11.1)| Length = 658 Score = 29.3 bits (64), Expect = 5.0 Identities = 17/81 (20%), Positives = 33/81 (40%) Frame = +3 Query: 51 ETDLQERKHISAKSIHTSIGIISPPPK*QANYWAHPCYNRDSVCVKPILIILFTGLLGPP 230 E D+ + + + GI+ + ++ Y++ P + S + +++ GL PP Sbjct: 448 EADMSGKLSLKQSATMPKKGILKKTQQRESGYYSSPERSESSELLDSNDVVISGGLSSPP 507 Query: 231 PSFRHGQQSQLFPAIHGAIKH 293 P G L G +KH Sbjct: 508 PDPARGTSHSLSCRRKGILKH 528
>HEM2_RAT (P06214) Delta-aminolevulinic acid dehydratase (EC 4.2.1.24)| (Porphobilinogen synthase) (ALADH) Length = 330 Score = 28.9 bits (63), Expect = 6.6 Identities = 13/23 (56%), Positives = 16/23 (69%) Frame = -3 Query: 434 DLVEHYVDKHPELKLARKEVVGE 366 D+V+ DKHPEL LA +V GE Sbjct: 259 DMVQEVKDKHPELPLAVYQVSGE 281
>CYOA_ECOLI (P0ABJ1) Ubiquinol oxidase subunit 2 precursor (EC 1.10.3.-)| (Ubiquinol oxidase polypeptide II) (Cytochrome o subunit 2) (Oxidase BO(3) subunit 2) (Cytochrome o ubiquinol oxidase subunit 2) (Ubiquinol oxidase chain B) Length = 315 Score = 28.9 bits (63), Expect = 6.6 Identities = 7/25 (28%), Positives = 16/25 (64%) Frame = -3 Query: 206 QYNQNWLHTN*ISVITWMSPVICLL 132 +Y+ NW H+N + + W P++ ++ Sbjct: 77 KYSPNWSHSNKVEAVVWTVPILIII 101
>CYOA_ECOL6 (P0ABJ2) Ubiquinol oxidase subunit 2 precursor (EC 1.10.3.-)| (Ubiquinol oxidase polypeptide II) (Cytochrome o subunit 2) (Oxidase BO(3) subunit 2) (Cytochrome o ubiquinol oxidase subunit 2) (Ubiquinol oxidase chain B) Length = 315 Score = 28.9 bits (63), Expect = 6.6 Identities = 7/25 (28%), Positives = 16/25 (64%) Frame = -3 Query: 206 QYNQNWLHTN*ISVITWMSPVICLL 132 +Y+ NW H+N + + W P++ ++ Sbjct: 77 KYSPNWSHSNKVEAVVWTVPILIII 101
>VP75_SHV21 (P11282) Probable membrane antigen 75 (Tegument protein)| Length = 1299 Score = 28.5 bits (62), Expect = 8.6 Identities = 23/88 (26%), Positives = 36/88 (40%) Frame = +3 Query: 48 QETDLQERKHISAKSIHTSIGIISPPPK*QANYWAHPCYNRDSVCVKPILIILFTGLLGP 227 Q+TD ++A + TSI I+P K N H C +++ + FT Sbjct: 791 QDTDAANTVVVTASARVTSIERITPALKKAENALVHVCLSKELTLSGSVFENSFTAFSSH 850 Query: 228 PPSFRHGQQSQLFPAIHGAIKHLLSSIL 311 P + +F A+KHL+S L Sbjct: 851 LPDLDTSKLRDMF----YAVKHLISKNL 874
>GADX_SHIFL (Q83PR0) HTH-type transcriptional regulator gadX| Length = 274 Score = 28.5 bits (62), Expect = 8.6 Identities = 14/39 (35%), Positives = 21/39 (53%) Frame = -1 Query: 133 YFGGGDMIPIDVWILLADICLRSCKSVS*NSLRLLYPFL 17 YF GGD++ D + D C+ + VS ++L L P L Sbjct: 28 YFNGGDLVFADASQIRVDKCVENFVLVSRDTLSLFLPML 66
>GADX_ECOLI (P37639) HTH-type transcriptional regulator gadX| Length = 274 Score = 28.5 bits (62), Expect = 8.6 Identities = 14/39 (35%), Positives = 21/39 (53%) Frame = -1 Query: 133 YFGGGDMIPIDVWILLADICLRSCKSVS*NSLRLLYPFL 17 YF GGD++ D + D C+ + VS ++L L P L Sbjct: 28 YFNGGDLVFADASQIRVDKCVENFVFVSRDTLSLFLPML 66
>GADX_ECOL6 (Q8FCI6) HTH-type transcriptional regulator gadX| Length = 274 Score = 28.5 bits (62), Expect = 8.6 Identities = 14/39 (35%), Positives = 21/39 (53%) Frame = -1 Query: 133 YFGGGDMIPIDVWILLADICLRSCKSVS*NSLRLLYPFL 17 YF GGD++ D + D C+ + VS ++L L P L Sbjct: 28 YFNGGDLVFADASQIQVDKCVENFVLVSRDTLSLFLPML 66
>GADX_ECO57 (P58230) HTH-type transcriptional regulator gadX| Length = 274 Score = 28.5 bits (62), Expect = 8.6 Identities = 14/39 (35%), Positives = 21/39 (53%) Frame = -1 Query: 133 YFGGGDMIPIDVWILLADICLRSCKSVS*NSLRLLYPFL 17 YF GGD++ D + D C+ + VS ++L L P L Sbjct: 28 YFNGGDLVFADASQIRVDKCVENFVLVSRDTLSLFLPML 66
>GADX_ECO27 (Q9EYV5) HTH-type transcriptional regulator gadX| Length = 274 Score = 28.5 bits (62), Expect = 8.6 Identities = 14/39 (35%), Positives = 21/39 (53%) Frame = -1 Query: 133 YFGGGDMIPIDVWILLADICLRSCKSVS*NSLRLLYPFL 17 YF GGD++ D + D C+ + VS ++L L P L Sbjct: 28 YFNGGDLVFADASQIQVDKCVENFVLVSRDTLSLFLPML 66
>YB1E_SCHPO (P87179) Serine-rich protein C30B4.01c precursor| Length = 374 Score = 28.5 bits (62), Expect = 8.6 Identities = 19/55 (34%), Positives = 30/55 (54%) Frame = +1 Query: 217 SSVLLRHSATDSNPSFFPQSTVPSSTSLAPYLNLKPNSTSLFVLACTLTPSPTTS 381 SS HS++ S+ S S+ PSS+S + S+S F+ T+TPS ++S Sbjct: 212 SSTSSSHSSSSSSSSSSSSSSRPSSSSSF----ITTMSSSTFISTVTVTPSSSSS 262 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 66,681,854 Number of Sequences: 219361 Number of extensions: 1347746 Number of successful extensions: 4052 Number of sequences better than 10.0: 23 Number of HSP's better than 10.0 without gapping: 3889 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4051 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 2909956200 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
