ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart16h04
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_479045.1| Oryza sativa (japonica cultivar-group), mRNA 62 2e-06
2dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 62 2e-06
3dbj|AP004230.2| Oryza sativa (japonica cultivar-group) genomic D... 62 2e-06
4dbj|AP003840.2| Oryza sativa (japonica cultivar-group) genomic D... 62 2e-06
5dbj|AK067272.1| Oryza sativa (japonica cultivar-group) cDNA clon... 62 2e-06
6gb|AY342389.1| Rattus norvegicus keratin 5 mRNA, complete cds 46 0.10
7ref|NM_183333.1| Rattus norvegicus keratin complex 2, basic, gen... 46 0.10
8gb|BC062086.1| Rattus norvegicus keratin complex 2, basic, gene ... 46 0.10
9gb|AC133092.4| Mus musculus BAC clone RP23-404G6 from chromosome... 44 0.40
10ref|XM_582022.2| PREDICTED: Bos taurus similar to frataxin isofo... 42 1.6
11gb|AC023933.9| Homo sapiens chromosome 8, clone RP11-553F15, com... 42 1.6
12dbj|AP005625.2| Homo sapiens genomic DNA, chromosome 8q23, clone... 42 1.6
13dbj|AP006182.1| Homo sapiens genomic DNA, chromosome 8q23, clone... 42 1.6
14gb|AC133499.3| Mus musculus BAC clone RP24-248F14 from 8, comple... 42 1.6
15gb|AC133195.4| Mus musculus BAC clone RP23-133F6 from 8, complet... 42 1.6
16gb|AC101980.8| Mus musculus chromosome 7, clone RP24-339E15, com... 40 6.2
17gb|AC132685.3| Mus musculus BAC clone RP23-278G24 from chromosom... 40 6.2
18emb|AL591682.8| Human DNA sequence from clone RP11-356K24 on chr... 40 6.2
19emb|BX927234.8| Zebrafish DNA sequence from clone CH211-196N4 in... 40 6.2
20gb|AC098484.2| Homo sapiens chromosome 1 clone RP5-994D16, compl... 40 6.2
21gb|DQ173430.1| Agelena limbata 12S ribosomal RNA gene, partial s... 40 6.2
22gb|AF351620.1|AF351620 Homo sapiens lipocalin-1 interacting memb... 40 6.2
23gb|AC011603.37| Homo sapiens 12 BAC RP11-386G11 (Roswell Park Ca... 40 6.2
24emb|AJ006526.1|BNA6526 Brassica napus mRNA for E3 protein 40 6.2
25gb|AF161353.1|AF161353 Homo sapiens HSPC090 mRNA, partial cds 40 6.2
26gb|AF145037.1|AF145037 Agelena limbata 12S ribosomal RNA gene, p... 40 6.2
27emb|AL772379.11| Mouse DNA sequence from clone RP23-170D24 on ch... 40 6.2
28emb|AL807245.17| Mouse DNA sequence from clone RP23-102B2 on chr... 40 6.2
29gb|AE017226.1| Treponema denticola ATCC 35405, complete genome 40 6.2
30emb|AL671995.4| Mouse DNA sequence from clone RP23-109E24 on chr... 40 6.2 
>ref|XM_479045.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1162

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 49/55 (89%)
 Strand = Plus / Minus

                                                                  
Query: 314 acttgaaacctaactccacaagcttgtttgtgttagcctgcactctcactccctc 368
           ||||||| ||||| |||||||||||||| |||| ||| ||||||||||| |||||
Sbjct: 977 acttgaaccctaaatccacaagcttgttggtgtcagcttgcactctcaccccctc 923
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 49/55 (89%)
 Strand = Plus / Plus

                                                                       
Query: 314      acttgaaacctaactccacaagcttgtttgtgttagcctgcactctcactccctc 368
                ||||||| ||||| |||||||||||||| |||| ||| ||||||||||| |||||
Sbjct: 24461949 acttgaaccctaaatccacaagcttgttggtgtcagcttgcactctcaccccctc 24462003



 Score = 50.1 bits (25), Expect = 0.006
 Identities = 37/41 (90%)
 Strand = Plus / Plus

                                                         
Query: 304      ccatacttaaacttgaaacctaactccacaagcttgtttgt 344
                ||||||||  ||||||||||||| ||||||||||| |||||
Sbjct: 24505801 ccatacttgtacttgaaacctaaatccacaagcttatttgt 24505841
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>dbj|AP004230.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OJ2013_G04
          Length = 73667

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 49/55 (89%)
 Strand = Plus / Plus

                                                                    
Query: 314   acttgaaacctaactccacaagcttgtttgtgttagcctgcactctcactccctc 368
             ||||||| ||||| |||||||||||||| |||| ||| ||||||||||| |||||
Sbjct: 11759 acttgaaccctaaatccacaagcttgttggtgtcagcttgcactctcaccccctc 11813



 Score = 50.1 bits (25), Expect = 0.006
 Identities = 37/41 (90%)
 Strand = Plus / Plus

                                                      
Query: 304   ccatacttaaacttgaaacctaactccacaagcttgtttgt 344
             ||||||||  ||||||||||||| ||||||||||| |||||
Sbjct: 55611 ccatacttgtacttgaaacctaaatccacaagcttatttgt 55651
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>dbj|AP003840.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OJ1634_B10
          Length = 100294

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 49/55 (89%)
 Strand = Plus / Plus

                                                                    
Query: 314   acttgaaacctaactccacaagcttgtttgtgttagcctgcactctcactccctc 368
             ||||||| ||||| |||||||||||||| |||| ||| ||||||||||| |||||
Sbjct: 87816 acttgaaccctaaatccacaagcttgttggtgtcagcttgcactctcaccccctc 87870
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>dbj|AK067272.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013098D22, full
           insert sequence
          Length = 1162

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 49/55 (89%)
 Strand = Plus / Minus

                                                                  
Query: 314 acttgaaacctaactccacaagcttgtttgtgttagcctgcactctcactccctc 368
           ||||||| ||||| |||||||||||||| |||| ||| ||||||||||| |||||
Sbjct: 977 acttgaaccctaaatccacaagcttgttggtgtcagcttgcactctcaccccctc 923
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>gb|AY342389.1| Rattus norvegicus keratin 5 mRNA, complete cds
          Length = 2088

 Score = 46.1 bits (23), Expect = 0.10
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                      
Query: 417 gtagtgctccaccagatcctgcatgtt 443
           ||||| |||||||||||||||||||||
Sbjct: 963 gtagtcctccaccagatcctgcatgtt 937
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>ref|NM_183333.1| Rattus norvegicus keratin complex 2, basic, gene 5 (Krt2-5), mRNA
          Length = 2088

 Score = 46.1 bits (23), Expect = 0.10
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                      
Query: 417 gtagtgctccaccagatcctgcatgtt 443
           ||||| |||||||||||||||||||||
Sbjct: 963 gtagtcctccaccagatcctgcatgtt 937
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>gb|BC062086.1| Rattus norvegicus keratin complex 2, basic, gene 5, mRNA (cDNA
           clone MGC:72626 IMAGE:5599969), complete cds
          Length = 2186

 Score = 46.1 bits (23), Expect = 0.10
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                      
Query: 417 gtagtgctccaccagatcctgcatgtt 443
           ||||| |||||||||||||||||||||
Sbjct: 826 gtagtcctccaccagatcctgcatgtt 800
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>gb|AC133092.4| Mus musculus BAC clone RP23-404G6 from chromosome 3, complete sequence
          Length = 190089

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                            
Query: 356    ctctcactccctctcccaccacctctttcc 385
              ||||| |||||||||||||| |||||||||
Sbjct: 107541 ctctctctccctctcccaccccctctttcc 107570
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>ref|XM_582022.2| PREDICTED: Bos taurus similar to frataxin isoform 1 preproprotein
            (LOC505694), mRNA
          Length = 1706

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 287  caagcacctccttagctccat 307
            |||||||||||||||||||||
Sbjct: 1588 caagcacctccttagctccat 1568
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>gb|AC023933.9| Homo sapiens chromosome 8, clone RP11-553F15, complete sequence
          Length = 176518

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 143    ttactgggctcatccatgttataac 167
              |||| ||||||||||||||||||||
Sbjct: 152851 ttacagggctcatccatgttataac 152827
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>dbj|AP005625.2| Homo sapiens genomic DNA, chromosome 8q23, clone: KB1905B11, complete
              sequence
          Length = 184137

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 143    ttactgggctcatccatgttataac 167
              |||| ||||||||||||||||||||
Sbjct: 121626 ttacagggctcatccatgttataac 121602
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>dbj|AP006182.1| Homo sapiens genomic DNA, chromosome 8q23, clone: KB467B4, complete
            sequence
          Length = 123502

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 143  ttactgggctcatccatgttataac 167
            |||| ||||||||||||||||||||
Sbjct: 7208 ttacagggctcatccatgttataac 7184
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>gb|AC133499.3| Mus musculus BAC clone RP24-248F14 from 8, complete sequence
          Length = 181064

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                          
Query: 357   tctcactccctctcccaccacctctttcc 385
             |||| |||||||||||||| |||||||||
Sbjct: 45334 tctccctccctctcccacctcctctttcc 45362
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>gb|AC133195.4| Mus musculus BAC clone RP23-133F6 from 8, complete sequence
          Length = 214318

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                           
Query: 357    tctcactccctctcccaccacctctttcc 385
              |||| |||||||||||||| |||||||||
Sbjct: 206917 tctccctccctctcccacctcctctttcc 206945
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>gb|AC101980.8| Mus musculus chromosome 7, clone RP24-339E15, complete sequence
          Length = 219739

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 362    ctccctctcccaccacctct 381
              ||||||||||||||||||||
Sbjct: 143434 ctccctctcccaccacctct 143453
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>gb|AC132685.3| Mus musculus BAC clone RP23-278G24 from chromosome 7, complete sequence
          Length = 188989

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 355   actctcactccctctcccac 374
             ||||||||||||||||||||
Sbjct: 65768 actctcactccctctcccac 65749
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>emb|AL591682.8| Human DNA sequence from clone RP11-356K24 on chromosome 6 Contains part
              of gene KIAA1733 and a CpG island, complete sequence
          Length = 164000

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 4      tcaaaattaaccataaaaaa 23
              ||||||||||||||||||||
Sbjct: 147666 tcaaaattaaccataaaaaa 147685
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>emb|BX927234.8| Zebrafish DNA sequence from clone CH211-196N4 in linkage group 19,
              complete sequence
          Length = 187155

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 419    agtgctccaccagatcctgcatgt 442
              |||| |||||||||||||||||||
Sbjct: 179330 agtgttccaccagatcctgcatgt 179353
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>gb|AC098484.2| Homo sapiens chromosome 1 clone RP5-994D16, complete sequence
          Length = 161835

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 8    aattaaccataaaaaaggat 27
            ||||||||||||||||||||
Sbjct: 8357 aattaaccataaaaaaggat 8338
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>gb|DQ173430.1| Agelena limbata 12S ribosomal RNA gene, partial sequence;
           mitochondrial
          Length = 292

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 4   tcaaaattaaccataaaaaaggat 27
           |||||||||| |||||||||||||
Sbjct: 203 tcaaaattaaacataaaaaaggat 226
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>gb|AF351620.1|AF351620 Homo sapiens lipocalin-1 interacting membrane receptor (LIMR) gene,
             complete cds
          Length = 14699

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 347   tagcctgcactctcactccctctc 370
             |||||||||| |||||||||||||
Sbjct: 13166 tagcctgcaccctcactccctctc 13143
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>gb|AC011603.37| Homo sapiens 12 BAC RP11-386G11 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 174400

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 347   tagcctgcactctcactccctctc 370
             |||||||||| |||||||||||||
Sbjct: 61000 tagcctgcaccctcactccctctc 60977
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>emb|AJ006526.1|BNA6526 Brassica napus mRNA for E3 protein
          Length = 398

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 350 cctgcactctcactccctctccca 373
           |||||||||||||||| |||||||
Sbjct: 37  cctgcactctcactccgtctccca 60
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>gb|AF161353.1|AF161353 Homo sapiens HSPC090 mRNA, partial cds
          Length = 2020

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 288  aagcacctccttagctccat 307
            ||||||||||||||||||||
Sbjct: 1446 aagcacctccttagctccat 1427
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>gb|AF145037.1|AF145037 Agelena limbata 12S ribosomal RNA gene, partial sequence;
           mitochondrial gene for mitochondrial product
          Length = 365

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 4   tcaaaattaaccataaaaaaggat 27
           |||||||||| |||||||||||||
Sbjct: 255 tcaaaattaaacataaaaaaggat 278
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>emb|AL772379.11| Mouse DNA sequence from clone RP23-170D24 on chromosome 2, complete
            sequence
          Length = 99774

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 412  tccacgtagtgctccaccag 431
            ||||||||||||||||||||
Sbjct: 6608 tccacgtagtgctccaccag 6627
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>emb|AL807245.17| Mouse DNA sequence from clone RP23-102B2 on chromosome 11, complete
             sequence
          Length = 114581

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 355   actctcactccctctcccaccacc 378
             ||||||||||||||| ||||||||
Sbjct: 57600 actctcactccctctaccaccacc 57577
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>gb|AE017226.1| Treponema denticola ATCC 35405, complete genome
          Length = 2843201

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 5       caaaattaaccataaaaaag 24
               ||||||||||||||||||||
Sbjct: 1454448 caaaattaaccataaaaaag 1454429
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>emb|AL671995.4| Mouse DNA sequence from clone RP23-109E24 on chromosome X, complete
             sequence
          Length = 155349

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 110   tatcatatcaccccctccaa 129
             ||||||||||||||||||||
Sbjct: 28384 tatcatatcaccccctccaa 28403


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,206,430
Number of Sequences: 3902068
Number of extensions: 4206430
Number of successful extensions: 91816
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 91724
Number of HSP's gapped (non-prelim): 92
length of query: 460
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 438
effective length of database: 17,147,199,772
effective search space: 7510473500136
effective search space used: 7510473500136
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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