Clone Name | rbart16g10 |
---|---|
Clone Library Name | barley_pub |
>EXB1A_MAIZE (P58738) Beta-expansin 1a precursor (Pollen allergen Zea m 1) (Zea| m I) Length = 269 Score = 64.3 bits (155), Expect = 1e-10 Identities = 26/48 (54%), Positives = 37/48 (77%) Frame = -1 Query: 458 WRMDTNRPLQGPFSIRITTDTGKMLVANNAIPAYWQQAKAYWSNIQFY 315 WRMDT + L+GPFSIR+T+++GK ++A + IPA W+ Y SN+QFY Sbjct: 222 WRMDTAKALKGPFSIRLTSESGKKVIAKDVIPANWRPDAVYTSNVQFY 269
>EXB1B_MAIZE (Q07154) Beta-expansin 1b (Pollen allergen Zea m 1) (Zea m I)| (Fragment) Length = 191 Score = 63.9 bits (154), Expect = 2e-10 Identities = 26/48 (54%), Positives = 37/48 (77%) Frame = -1 Query: 458 WRMDTNRPLQGPFSIRITTDTGKMLVANNAIPAYWQQAKAYWSNIQFY 315 WRMDT + L+GPFSIR+T+++GK ++A + IPA W+ Y SN+QFY Sbjct: 144 WRMDTAKALKGPFSIRLTSESGKKVIAKDIIPANWRPDAVYTSNVQFY 191
>MPAC1_CYNDA (O04701) Major pollen allergen Cyn d 1| Length = 246 Score = 55.1 bits (131), Expect = 9e-08 Identities = 23/47 (48%), Positives = 33/47 (70%) Frame = -1 Query: 458 WRMDTNRPLQGPFSIRITTDTGKMLVANNAIPAYWQQAKAYWSNIQF 318 WR+D +PL+GPFSIR+T++ G LV ++ IPA W+ Y S +QF Sbjct: 198 WRIDPKKPLKGPFSIRLTSEGGAHLVQDDVIPANWKPDTVYTSKLQF 244
>EXPB2_ARATH (Q9SHY6) Putative beta-expansin 2 precursor (AtEXPB2) (At-EXPB2)| (Ath-ExpBeta-1.4) Length = 273 Score = 53.1 bits (126), Expect = 3e-07 Identities = 22/48 (45%), Positives = 34/48 (70%), Gaps = 1/48 (2%) Frame = -1 Query: 458 WRMDTNRPLQGPFSIRITT-DTGKMLVANNAIPAYWQQAKAYWSNIQF 318 W++D + PL+ P S+R+T+ ++GK +VA+N IPA WQ Y SN+ F Sbjct: 226 WKLDVSSPLRAPLSLRVTSLESGKTVVASNVIPANWQPGAIYKSNVNF 273
>EXPB5_ARATH (Q9M203) Putative beta-expansin 5 precursor (AtEXPB5) (At-EXPB5)| (Ath-ExpBeta-1.3) Length = 264 Score = 44.3 bits (103), Expect = 2e-04 Identities = 19/48 (39%), Positives = 28/48 (58%), Gaps = 1/48 (2%) Frame = -1 Query: 458 WRMDTNRPLQGPFSIRITTD-TGKMLVANNAIPAYWQQAKAYWSNIQF 318 WR+ PL+GPF+IR+T+ +GK ++A IP W Y S + F Sbjct: 210 WRLSPGVPLKGPFNIRLTSAVSGKKIIAKGVIPEKWSPGAIYHSKVNF 257
>EXPB4_ARATH (Q9SHD1) Putative beta-expansin 4 precursor (AtEXPB4) (At-EXPB4)| (Ath-ExpBeta-1.1) Length = 259 Score = 44.3 bits (103), Expect = 2e-04 Identities = 19/48 (39%), Positives = 35/48 (72%), Gaps = 1/48 (2%) Frame = -1 Query: 458 WRMDTNRPLQGPFSIRITT-DTGKMLVANNAIPAYWQQAKAYWSNIQF 318 W++++ L+GPF+IR+T+ ++ K++VA N IPA W+ ++Y S + F Sbjct: 212 WKVNSGSALRGPFNIRLTSGESHKVIVAYNVIPANWKPDESYRSIVNF 259
>MPAO1_ORYSA (Q40638) Major pollen allergen Ory s 1 precursor (Ory s I)| Length = 263 Score = 43.5 bits (101), Expect = 3e-04 Identities = 17/32 (53%), Positives = 25/32 (78%) Frame = -1 Query: 458 WRMDTNRPLQGPFSIRITTDTGKMLVANNAIP 363 WR+DT +PL+GPFS+R+TT+ + A +AIP Sbjct: 217 WRIDTPKPLKGPFSVRVTTEGARRSSAEDAIP 248
>MPAP1_PHLPR (P43213) Pollen allergen Phl p 1 precursor (Phl p I)| Length = 263 Score = 40.4 bits (93), Expect = 0.002 Identities = 18/43 (41%), Positives = 25/43 (58%) Frame = -1 Query: 458 WRMDTNRPLQGPFSIRITTDTGKMLVANNAIPAYWQQAKAYWS 330 WR+DT L GPF++R TT+ G A + IP W+ +Y S Sbjct: 220 WRIDTPDKLTGPFTVRYTTEGGTKTEAEDVIPEGWKADTSYES 262
>MPAH1_HOLLA (P43216) Major pollen allergen Hol l 1 precursor (Hol l I) (Hol l| 1.0101 and 1.0102) Length = 265 Score = 40.0 bits (92), Expect = 0.003 Identities = 18/41 (43%), Positives = 24/41 (58%) Frame = -1 Query: 458 WRMDTNRPLQGPFSIRITTDTGKMLVANNAIPAYWQQAKAY 336 WR+DT L GPF++R TT+ G A + IP W+ AY Sbjct: 222 WRVDTPDKLTGPFTVRYTTEGGTKGEAEDVIPEGWKADTAY 262
>EXPB3_ARATH (Q9M0I2) Beta-expansin 3 precursor (AtEXPB3) (At-EXPB3)| (Ath-ExpBeta-1.6) Length = 264 Score = 38.5 bits (88), Expect = 0.008 Identities = 18/41 (43%), Positives = 24/41 (58%), Gaps = 1/41 (2%) Frame = -1 Query: 437 PLQGPFSIRITT-DTGKMLVANNAIPAYWQQAKAYWSNIQF 318 PL+GPFSI++TT GK L A + +P W Y S + F Sbjct: 220 PLKGPFSIKLTTLSAGKTLSATDVVPRNWAPKATYSSRLNF 260
>MPAL1_LOLPR (P14946) Pollen allergen Lol p 1 precursor (Lol p I) (Allergen R7)| Length = 263 Score = 37.4 bits (85), Expect = 0.018 Identities = 16/41 (39%), Positives = 23/41 (56%) Frame = -1 Query: 458 WRMDTNRPLQGPFSIRITTDTGKMLVANNAIPAYWQQAKAY 336 WR+DT L GPF++R TT+ G + IP W+ +Y Sbjct: 220 WRIDTPDKLTGPFTVRYTTEGGTKSEFEDVIPEGWKADTSY 260
>EXPB1_ARATH (Q9SKU2) Beta-expansin 1 precursor (AtEXPB1) (At-EXPB1)| (Ath-ExpBeta-1.5) Length = 271 Score = 37.0 bits (84), Expect = 0.024 Identities = 17/41 (41%), Positives = 24/41 (58%), Gaps = 1/41 (2%) Frame = -1 Query: 437 PLQGPFSIRITT-DTGKMLVANNAIPAYWQQAKAYWSNIQF 318 PL+GPFS+++TT K L A + IP+ W Y S + F Sbjct: 227 PLKGPFSVKLTTLSNNKTLSATDVIPSNWVPKATYTSRLNF 267
>MPAP1_PHAAQ (Q41260) Major pollen allergen Pha a 1 precursor (Pha a I)| Length = 269 Score = 36.2 bits (82), Expect = 0.041 Identities = 15/36 (41%), Positives = 21/36 (58%) Frame = -1 Query: 458 WRMDTNRPLQGPFSIRITTDTGKMLVANNAIPAYWQ 351 WR+DT L GPF++R TT+ G + IP W+ Sbjct: 226 WRIDTPDKLTGPFTVRYTTEGGTKAEFEDVIPEGWK 261
>MPAP2_PHLPR (P43214) Pollen allergen Phl p 2 precursor (Phl p II)| Length = 122 Score = 35.0 bits (79), Expect = 0.092 Identities = 14/41 (34%), Positives = 21/41 (51%) Frame = -1 Query: 458 WRMDTNRPLQGPFSIRITTDTGKMLVANNAIPAYWQQAKAY 336 W D+ PLQGPF+ R T+ G V ++ +P + Y Sbjct: 78 WTFDSEEPLQGPFNFRFLTEKGMKNVFDDVVPEKYTIGATY 118
>MPAL2_LOLPR (P14947) Pollen allergen Lol p 2-A (Lol p II-A)| Length = 97 Score = 33.9 bits (76), Expect = 0.20 Identities = 12/41 (29%), Positives = 25/41 (60%) Frame = -1 Query: 458 WRMDTNRPLQGPFSIRITTDTGKMLVANNAIPAYWQQAKAY 336 W + +++PL+GPF+ R ++ G V ++ +PA ++ Y Sbjct: 54 WEIKSDKPLKGPFNFRFVSEKGMRNVFDDVVPADFKVGTTY 94
>NMDE4_HUMAN (O15399) Glutamate [NMDA] receptor subunit epsilon 4 precursor| (N-methyl D-aspartate receptor subtype 2D) (NR2D) (NMDAR2D) (EB11) Length = 1336 Score = 32.3 bits (72), Expect = 0.59 Identities = 15/28 (53%), Positives = 17/28 (60%) Frame = -3 Query: 447 HQPPAAGAILHTHHHRHRKDAGGQQCHP 364 H+ PAA A HHHRHR+ AGG P Sbjct: 1240 HRTPAAAA---PHHHRHRRAAGGWDLPP 1264
>VE4_RHPV1 (P24832) Probable protein E4| Length = 91 Score = 32.0 bits (71), Expect = 0.78 Identities = 20/54 (37%), Positives = 25/54 (46%), Gaps = 5/54 (9%) Frame = -3 Query: 447 HQPPAAGAILHTHHHRHRKDAGGQ-----QCHPGILAAGQSLLV*HPVLLIGLP 301 H PP A T HR + + GQ QC P + AGQS + H L G+P Sbjct: 31 HPPPPTPAPRKTCGHRLQSECVGQTQVEIQCGPWTVKAGQSFVDLHTTTLQGVP 84
>NMDE4_MOUSE (Q03391) Glutamate [NMDA] receptor subunit epsilon 4 precursor| (N-methyl D-aspartate receptor subtype 2D) (NR2D) (NMDAR2D) Length = 1323 Score = 30.4 bits (67), Expect = 2.3 Identities = 14/28 (50%), Positives = 16/28 (57%) Frame = -3 Query: 447 HQPPAAGAILHTHHHRHRKDAGGQQCHP 364 H+ PAA HHHRHR+ AGG P Sbjct: 1228 HRAPAAAP----HHHRHRRAAGGWDLPP 1251
>EXP14_ARATH (Q9FMA0) Putative alpha-expansin 14 precursor (AtEXPA14) (At-EXP14)| (AtEx14) (Ath-ExpAlpha-1.5) Length = 255 Score = 30.4 bits (67), Expect = 2.3 Identities = 13/38 (34%), Positives = 21/38 (55%), Gaps = 1/38 (2%) Frame = -1 Query: 446 TNRPLQGP-FSIRITTDTGKMLVANNAIPAYWQQAKAY 336 +N L G S ++TT G+ +++NNA P W + Y Sbjct: 209 SNAKLDGQALSFKVTTSDGRTVISNNATPRNWSFGQTY 246
>EXP11_ARATH (Q9LNU3) Alpha-expansin 11 precursor (AtEXPA11) (At-EXP11) (AtEx11)| (Ath-ExpAlpha-1.14) Length = 252 Score = 30.4 bits (67), Expect = 2.3 Identities = 14/34 (41%), Positives = 18/34 (52%) Frame = -1 Query: 419 SIRITTDTGKMLVANNAIPAYWQQAKAYWSNIQF 318 S ITT G V N +P+ W + Y SN+QF Sbjct: 219 SFSITTTDGATRVFLNVVPSSWSFGQIYSSNVQF 252
>NMDE4_RAT (Q62645) Glutamate [NMDA] receptor subunit epsilon 4 precursor| (N-methyl D-aspartate receptor subtype 2D) (NR2D) (NMDAR2D) Length = 1323 Score = 30.0 bits (66), Expect = 2.9 Identities = 14/28 (50%), Positives = 16/28 (57%) Frame = -3 Query: 447 HQPPAAGAILHTHHHRHRKDAGGQQCHP 364 H+ PAA HHHRHR+ AGG P Sbjct: 1228 HRAPAAAP----HHHRHRRAAGGWDFPP 1251
>EXPA8_ARATH (O22874) Alpha-expansin 8 precursor (AtEXPA8) (At-EXP8) (AtEx8)| (Ath-ExpAlpha-1.11) Length = 253 Score = 30.0 bits (66), Expect = 2.9 Identities = 11/28 (39%), Positives = 18/28 (64%) Frame = -1 Query: 419 SIRITTDTGKMLVANNAIPAYWQQAKAY 336 S ++TT G+ LV+N+ P+ WQ + Y Sbjct: 221 SFQVTTSDGRTLVSNDVAPSNWQFGQTY 248
>EXPL1_ARATH (Q9LZT4) Expansin-like 1 precursor (AtEXPL1) (At-EXPL1)| (Ath-ExpBeta-2.1) Length = 265 Score = 30.0 bits (66), Expect = 2.9 Identities = 12/41 (29%), Positives = 22/41 (53%) Frame = -1 Query: 395 GKMLVANNAIPAYWQQAKAYWSNIQFY*LAYLSTSPIDAEL 273 GKM+ + + +P+ W+ K Y + +Q +A P DA + Sbjct: 223 GKMIWSQSVLPSNWEAGKIYDAGVQITDIAQEGCDPCDAHI 263
>5E5_RAT (Q63003) 5E5 antigen| Length = 825 Score = 30.0 bits (66), Expect = 2.9 Identities = 17/44 (38%), Positives = 22/44 (50%), Gaps = 1/44 (2%) Frame = -3 Query: 450 GHQPPAAGAI-LHTHHHRHRKDAGGQQCHPGILAAGQSLLV*HP 322 GH PPAAGA + T R R G++ G+L G+ L P Sbjct: 623 GHGPPAAGAAQVSTRGRRARGQRTGEEAQDGLLPRGRDRLPLRP 666
>EXPL2_ARATH (Q9SVE5) Expansin-like 2 precursor (AtEXPL2) (At-EXPL2)| (Ath-ExpBeta-2.2) Length = 265 Score = 29.6 bits (65), Expect = 3.8 Identities = 17/54 (31%), Positives = 26/54 (48%) Frame = -1 Query: 443 NRPLQGPFSIRITTDTGKMLVANNAIPAYWQQAKAYWSNIQFY*LAYLSTSPID 282 N LQ F + D GKM+ + +PA W+ K+Y + +Q +A P D Sbjct: 208 NGALQFRFVVTAGYD-GKMVWSQRVLPANWEAGKSYDAGVQITDIAQEGCDPCD 260
>MPAG3_DACGL (P93124) Pollen allergen Dac g 3 (Dac g III) (Fragment)| Length = 96 Score = 29.6 bits (65), Expect = 3.8 Identities = 12/41 (29%), Positives = 21/41 (51%) Frame = -1 Query: 458 WRMDTNRPLQGPFSIRITTDTGKMLVANNAIPAYWQQAKAY 336 W + +++PL GPF+ R + G V + IP ++ Y Sbjct: 52 WEVKSSKPLTGPFNFRFMSKGGMRNVFDEVIPTAFKIGTTY 92 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 63,286,612 Number of Sequences: 219361 Number of extensions: 1205925 Number of successful extensions: 3479 Number of sequences better than 10.0: 26 Number of HSP's better than 10.0 without gapping: 3180 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3425 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 2909956200 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)