Clone Information

BLAST Search Result

Clone Name	rbart16g01
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	KCAB_ORYSA (Q40648) Probable voltage-gated potassium channel bet...	84	2e-16
2	KCAB2_RAT (P62483) Voltage-gated potassium channel beta-2 subuni...	44	2e-04
3	KCAB2_MOUSE (P62482) Voltage-gated potassium channel beta-2 subu...	44	2e-04
4	KCAB2_HUMAN (Q13303) Voltage-gated potassium channel beta-2 subu...	44	2e-04
5	KCAB2_BOVIN (Q27955) Voltage-gated potassium channel beta-2 subu...	44	2e-04
6	KCAB2_XENLA (Q9PTM5) Voltage-gated potassium channel beta-2 subu...	43	3e-04
7	KCAB1_RAT (P63144) Voltage-gated potassium channel beta-1 subuni...	42	5e-04
8	KCAB1_MOUSE (P63143) Voltage-gated potassium channel beta-1 subu...	42	5e-04
9	KCAB1_BOVIN (Q4PJK1) Voltage-gated potassium channel beta-1 subu...	42	5e-04
10	KCAB1_RABIT (Q9XT31) Voltage-gated potassium channel beta-1 subu...	42	5e-04
11	KCAB1_HUMAN (Q14722) Voltage-gated potassium channel beta-1 subu...	42	5e-04
12	KCAB1_MUSPU (Q28528) Voltage-gated potassium channel beta-1 subu...	42	5e-04
13	KCAB1_CHICK (Q9PWR1) Voltage-gated potassium channel beta-1 subu...	42	9e-04
14	NPFF_BOVIN (Q9TUX7) FMRFamide-related peptides precursor [Contai...	38	0.010
15	KCAB3_XENLA (Q9PTM4) Voltage-gated potassium channel beta-3 subu...	35	0.083
16	KCAB3_HUMAN (O43448) Voltage-gated potassium channel beta-3 subu...	35	0.083
17	EWS_HUMAN (Q01844) RNA-binding protein EWS (EWS oncogene) (Ewing...	34	0.18
18	EWS_MOUSE (Q61545) RNA-binding protein EWS	34	0.18
19	RESIL_DROME (Q9V7U0) Pro-resilin precursor	33	0.24
20	KCAB3_MOUSE (P97382) Voltage-gated potassium channel beta-3 subu...	32	0.70
21	KCAB3_RAT (Q63494) Voltage-gated potassium channel beta-3 subuni...	32	0.91
22	LRP12_MOUSE (Q8BUJ9) Low-density lipoprotein receptor-related pr...	31	1.2
23	RLUB_XANAC (Q8PK58) Ribosomal large subunit pseudouridine syntha...	31	1.6
24	PUR2_ARATH (P52420) Phosphoribosylamine--glycine ligase, chlorop...	30	2.0
25	RSP3_CAEEL (Q9NEW6) Probable splicing factor, arginine/serine-ri...	30	2.7
26	PDZK3_RAT (Q9QZR8) PDZ domain-containing protein 3 (PDZ domain-c...	30	2.7
27	OVO_DROME (P51521) Protein ovo (Protein shaven baby)	30	2.7
28	ETV4_MOUSE (P28322) ETS translocation variant 4 (Polyomavirus en...	30	3.5
29	YAN9_SCHPO (Q10074) Hypothetical protein C3H1.09c in chromosome I	30	3.5
30	SPAG8_HUMAN (Q99932) Sperm-associated antigen 8 (Sperm membrane ...	30	3.5
31	SMRA3_MOUSE (Q6PCN7) SWI/SNF-related matrix-associated actin-dep...	29	4.5
32	ZBP1_HUMAN (Q9H171) Z-DNA-binding protein 1 (Tumor stroma and ac...	29	4.5
33	TESK1_HUMAN (Q15569) Dual specificity testis-specific protein ki...	29	4.5
34	SFR15_HUMAN (O95104) Splicing factor, arginine/serine-rich 15 (C...	29	5.9
35	SMRA3_HUMAN (Q14527) SWI/SNF-related matrix-associated actin-dep...	29	5.9
36	PCLO_CHICK (Q9PU36) Protein piccolo (Aczonin) (Fragment)	29	5.9
37	T22D4_HUMAN (Q9Y3Q8) TSC22 domain family protein 4 (TSC22-relate...	29	5.9
38	DBP10_CRYNE (Q5KMS9) ATP-dependent RNA helicase DBP10 (EC 3.6.1.-)	29	5.9
39	YQKF_BACSU (P54569) Hypothetical oxidoreductase yqkF (EC 1.-.-.-)	29	5.9
40	WDR33_HUMAN (Q9C0J8) WD-repeat protein 33 (WD-repeat protein WDC...	29	5.9
41	VG48_SHV21 (Q01033) Hypothetical gene 48 protein	29	5.9
42	SFR15_RAT (Q63627) Splicing factor, arginine/serine-rich 15 (CTD...	29	5.9
43	GUX1_HUMGT (P15828) Exoglucanase 1 precursor (EC 3.2.1.91) (Exog...	29	5.9
44	RS6_RHOCA (O68126) 30S ribosomal protein S6	29	5.9
45	PRP1_HUMAN (P04280) Basic salivary proline-rich protein 1 precur...	28	7.7
46	PRB2_HUMAN (P02812) Basic salivary proline-rich protein 2 (Saliv...	28	7.7
47	PUF6_YEAST (Q04373) Protein PUF6	28	7.7
48	TBC16_HUMAN (Q8TBP0) TBC1 domain family member 16	28	7.7
49	SRCA_HUMAN (Q86TD4) Sarcalumenin precursor	28	7.7
50	FBRL_GIALA (Q24957) Fibrillarin	28	7.7
51	SMRA3_RABIT (Q95216) SWI/SNF-related matrix-associated actin-dep...	28	7.7
52	RBP56_HUMAN (Q92804) TATA-binding protein-associated factor 2N (...	28	7.7

>KCAB_ORYSA (Q40648) Probable voltage-gated potassium channel beta subunit|
           (K(+) channel beta subunit)
          Length = 328

 Score = 84.0 bits (206), Expect = 2e-16
 Identities = 43/59 (72%), Positives = 46/59 (77%)
 Frame = -2

Query: 439 IAWCASNPNVSSVITGATKESQIVENMKAXXXXXXXXXXXXEKIEAVIQSKPKRLESYR 263
           IAWCASNPNVSSVITGATKE+QIVENMKA            +KIEAV+QSKPKR ESYR
Sbjct: 270 IAWCASNPNVSSVITGATKENQIVENMKALDVIPLLTPEVVDKIEAVVQSKPKRTESYR 328

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>KCAB2_RAT (P62483) Voltage-gated potassium channel beta-2 subunit (K(+)|
           channel beta-2 subunit) (Kv-beta-2)
          Length = 367

 Score = 43.5 bits (101), Expect = 2e-04
 Identities = 20/59 (33%), Positives = 32/59 (54%)
 Frame = -2

Query: 439 IAWCASNPNVSSVITGATKESQIVENMKAXXXXXXXXXXXXEKIEAVIQSKPKRLESYR 263
           IAWC  N  VSSV+ GA+   Q++EN+ A             +I++++ +KP   + YR
Sbjct: 308 IAWCLRNEGVSSVLLGASNAEQLMENIGAIQVLPKLSSSIVHEIDSILGNKPYSKKDYR 366

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>KCAB2_MOUSE (P62482) Voltage-gated potassium channel beta-2 subunit (K(+)|
           channel beta-2 subunit) (Kv-beta-2) (Neuroimmune protein
           F5)
          Length = 367

 Score = 43.5 bits (101), Expect = 2e-04
 Identities = 20/59 (33%), Positives = 32/59 (54%)
 Frame = -2

Query: 439 IAWCASNPNVSSVITGATKESQIVENMKAXXXXXXXXXXXXEKIEAVIQSKPKRLESYR 263
           IAWC  N  VSSV+ GA+   Q++EN+ A             +I++++ +KP   + YR
Sbjct: 308 IAWCLRNEGVSSVLLGASNAEQLMENIGAIQVLPKLSSSIVHEIDSILGNKPYSKKDYR 366

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>KCAB2_HUMAN (Q13303) Voltage-gated potassium channel beta-2 subunit (K(+)|
           channel beta-2 subunit) (Kv-beta-2) (HKvbeta2)
          Length = 367

 Score = 43.5 bits (101), Expect = 2e-04
 Identities = 20/59 (33%), Positives = 32/59 (54%)
 Frame = -2

Query: 439 IAWCASNPNVSSVITGATKESQIVENMKAXXXXXXXXXXXXEKIEAVIQSKPKRLESYR 263
           IAWC  N  VSSV+ GA+   Q++EN+ A             +I++++ +KP   + YR
Sbjct: 308 IAWCLRNEGVSSVLLGASNADQLMENIGAIQVLPKLSSSIIHEIDSILGNKPYSKKDYR 366

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>KCAB2_BOVIN (Q27955) Voltage-gated potassium channel beta-2 subunit (K(+)|
           channel beta-2 subunit) (Kv-beta-2)
          Length = 367

 Score = 43.5 bits (101), Expect = 2e-04
 Identities = 20/59 (33%), Positives = 32/59 (54%)
 Frame = -2

Query: 439 IAWCASNPNVSSVITGATKESQIVENMKAXXXXXXXXXXXXEKIEAVIQSKPKRLESYR 263
           IAWC  N  VSSV+ GA+   Q++EN+ A             +I++++ +KP   + YR
Sbjct: 308 IAWCLRNEGVSSVLLGASSADQLMENIGAIQVLPKLSSSIIHEIDSILGNKPYSKKDYR 366

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>KCAB2_XENLA (Q9PTM5) Voltage-gated potassium channel beta-2 subunit (K(+)|
           channel beta-2 subunit) (Kv-beta-2)
          Length = 367

 Score = 43.1 bits (100), Expect = 3e-04
 Identities = 20/59 (33%), Positives = 31/59 (52%)
 Frame = -2

Query: 439 IAWCASNPNVSSVITGATKESQIVENMKAXXXXXXXXXXXXEKIEAVIQSKPKRLESYR 263
           IAWC  N  VSSV+ GA+   Q++EN+ A             +I+ ++ +KP   + YR
Sbjct: 308 IAWCLRNEGVSSVLLGASNADQLLENIGAIQVLPKLSSSIIHEIDGILGNKPYSKKDYR 366

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>KCAB1_RAT (P63144) Voltage-gated potassium channel beta-1 subunit (K(+)|
           channel beta-1 subunit) (Kv-beta-1)
          Length = 401

 Score = 42.4 bits (98), Expect = 5e-04
 Identities = 18/59 (30%), Positives = 32/59 (54%)
 Frame = -2

Query: 439 IAWCASNPNVSSVITGATKESQIVENMKAXXXXXXXXXXXXEKIEAVIQSKPKRLESYR 263
           +AWC  N  VSSV+ G++   Q++EN+ A             +I+ ++++KP   + YR
Sbjct: 342 VAWCLRNEGVSSVLLGSSTPEQLIENLGAIQVLPKMTSHVVNEIDNILRNKPYSKKDYR 400

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>KCAB1_MOUSE (P63143) Voltage-gated potassium channel beta-1 subunit (K(+)|
           channel beta-1 subunit) (Kv-beta-1)
          Length = 401

 Score = 42.4 bits (98), Expect = 5e-04
 Identities = 18/59 (30%), Positives = 32/59 (54%)
 Frame = -2

Query: 439 IAWCASNPNVSSVITGATKESQIVENMKAXXXXXXXXXXXXEKIEAVIQSKPKRLESYR 263
           +AWC  N  VSSV+ G++   Q++EN+ A             +I+ ++++KP   + YR
Sbjct: 342 VAWCLRNEGVSSVLLGSSTPEQLIENLGAIQVLPKMTSHVVNEIDNILRNKPYSKKDYR 400

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>KCAB1_BOVIN (Q4PJK1) Voltage-gated potassium channel beta-1 subunit (K(+)|
           channel beta-1 subunit) (Kv-beta-1)
          Length = 401

 Score = 42.4 bits (98), Expect = 5e-04
 Identities = 18/59 (30%), Positives = 32/59 (54%)
 Frame = -2

Query: 439 IAWCASNPNVSSVITGATKESQIVENMKAXXXXXXXXXXXXEKIEAVIQSKPKRLESYR 263
           +AWC  N  VSSV+ G++   Q++EN+ A             +I+ ++++KP   + YR
Sbjct: 342 VAWCLRNEGVSSVLLGSSTPEQLIENLGAIQVLPKMTSHVVNEIDNILRNKPYSKKDYR 400

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>KCAB1_RABIT (Q9XT31) Voltage-gated potassium channel beta-1 subunit (K(+)|
           channel beta-1 subunit) (Kv-beta-1)
          Length = 419

 Score = 42.4 bits (98), Expect = 5e-04
 Identities = 18/59 (30%), Positives = 32/59 (54%)
 Frame = -2

Query: 439 IAWCASNPNVSSVITGATKESQIVENMKAXXXXXXXXXXXXEKIEAVIQSKPKRLESYR 263
           +AWC  N  VSSV+ G++   Q++EN+ A             +I+ ++++KP   + YR
Sbjct: 360 VAWCLRNEGVSSVLLGSSTPEQLIENLGAIQVLPKMTSHVVNEIDNILRNKPYSKKDYR 418

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>KCAB1_HUMAN (Q14722) Voltage-gated potassium channel beta-1 subunit (K(+)|
           channel beta-1 subunit) (Kv-beta-1)
          Length = 419

 Score = 42.4 bits (98), Expect = 5e-04
 Identities = 18/59 (30%), Positives = 32/59 (54%)
 Frame = -2

Query: 439 IAWCASNPNVSSVITGATKESQIVENMKAXXXXXXXXXXXXEKIEAVIQSKPKRLESYR 263
           +AWC  N  VSSV+ G++   Q++EN+ A             +I+ ++++KP   + YR
Sbjct: 360 VAWCLRNEGVSSVLLGSSTPEQLIENLGAIQVLPKMTSHVVNEIDNILRNKPYSKKDYR 418

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>KCAB1_MUSPU (Q28528) Voltage-gated potassium channel beta-1 subunit (K(+)|
           channel beta-1 subunit) (Kv-beta-1)
          Length = 408

 Score = 42.4 bits (98), Expect = 5e-04
 Identities = 18/59 (30%), Positives = 32/59 (54%)
 Frame = -2

Query: 439 IAWCASNPNVSSVITGATKESQIVENMKAXXXXXXXXXXXXEKIEAVIQSKPKRLESYR 263
           +AWC  N  VSSV+ G++   Q++EN+ A             +I+ ++++KP   + YR
Sbjct: 349 VAWCLRNEGVSSVLLGSSTPEQLIENLGAIQVLPKMTSHVVNEIDNILRNKPYSKKDYR 407

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>KCAB1_CHICK (Q9PWR1) Voltage-gated potassium channel beta-1 subunit (K(+)|
           channel beta-1 subunit) (Kv-beta-1)
          Length = 401

 Score = 41.6 bits (96), Expect = 9e-04
 Identities = 18/59 (30%), Positives = 31/59 (52%)
 Frame = -2

Query: 439 IAWCASNPNVSSVITGATKESQIVENMKAXXXXXXXXXXXXEKIEAVIQSKPKRLESYR 263
           +AWC  N  VSSV+ G++   Q++EN+ A             +I+ ++ +KP   + YR
Sbjct: 342 VAWCLRNEGVSSVLLGSSNPEQLIENLGAIQVLPKMTSHIVNEIDNILGNKPYSKKDYR 400

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>NPFF_BOVIN (Q9TUX7) FMRFamide-related peptides precursor [Contains:|
           Neuropeptide SF (NPSF); Neuropeptide FF (NPFF);
           Neuropeptide AF (NPAF)]
          Length = 115

 Score = 38.1 bits (87), Expect = 0.010
 Identities = 27/62 (43%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
 Frame = -1

Query: 374 DRGEHEGPGGRPAADSGGPGEDRGGHPEQ-AQAPRVVQMKHSVLSAVQRVPSTWWDFFPG 198
           D    EGPGGR   D     ED G HP Q AQ PR   +  S+L A+QR         PG
Sbjct: 18  DWSHAEGPGGRDGGDQIFMEEDSGAHPAQDAQTPR--SLLRSLLQAMQR---------PG 66

Query: 197 RS 192
           RS
Sbjct: 67  RS 68

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>KCAB3_XENLA (Q9PTM4) Voltage-gated potassium channel beta-3 subunit (K(+)|
           channel beta-3 subunit) (Kv-beta-3)
          Length = 401

 Score = 35.0 bits (79), Expect = 0.083
 Identities = 16/52 (30%), Positives = 27/52 (51%)
 Frame = -2

Query: 439 IAWCASNPNVSSVITGATKESQIVENMKAXXXXXXXXXXXXEKIEAVIQSKP 284
           IAWC  +  VSSV+ G +   Q++EN+ A             +I+ ++ +KP
Sbjct: 342 IAWCLRSEGVSSVLLGVSNIEQLLENLGAIQVLPHLTPQLVTEIDQILGNKP 393

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>KCAB3_HUMAN (O43448) Voltage-gated potassium channel beta-3 subunit (K(+)|
           channel beta-3 subunit) (Kv-beta-3)
          Length = 404

 Score = 35.0 bits (79), Expect = 0.083
 Identities = 15/52 (28%), Positives = 27/52 (51%)
 Frame = -2

Query: 439 IAWCASNPNVSSVITGATKESQIVENMKAXXXXXXXXXXXXEKIEAVIQSKP 284
           IAWC  +  VSSV+ G +   Q++E++ A             +I+ ++ +KP
Sbjct: 349 IAWCLRSEGVSSVLLGVSSAEQLIEHLGALQVLSQLTPQTVMEIDGLLGNKP 400

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>EWS_HUMAN (Q01844) RNA-binding protein EWS (EWS oncogene) (Ewing sarcoma|
           breakpoint region 1 protein)
          Length = 656

 Score = 33.9 bits (76), Expect = 0.18
 Identities = 28/83 (33%), Positives = 33/83 (39%), Gaps = 2/83 (2%)
 Frame = -1

Query: 377 PDRGEHEGPGGR--PAADSGGPGEDRGGHPEQAQAPRVVQMKHSVLSAVQRVPSTWWDFF 204
           P RG   GPGG   P    GG G DRGG P   + PR  +   S    VQ     W    
Sbjct: 469 PLRGGPGGPGGPGGPMGRMGGRGGDRGGFP--PRGPRGSRGNPSGGGNVQHRAGDWQCPN 526

Query: 203 PGRSISLYLVF*NYTWLLLCSRC 135
           PG          N+ W   C++C
Sbjct: 527 PGCGNQ------NFAWRTECNQC 543

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>EWS_MOUSE (Q61545) RNA-binding protein EWS|
          Length = 655

 Score = 33.9 bits (76), Expect = 0.18
 Identities = 28/83 (33%), Positives = 33/83 (39%), Gaps = 2/83 (2%)
 Frame = -1

Query: 377 PDRGEHEGPGGR--PAADSGGPGEDRGGHPEQAQAPRVVQMKHSVLSAVQRVPSTWWDFF 204
           P RG   GPGG   P    GG G DRGG P   + PR  +   S    VQ     W    
Sbjct: 468 PLRGGPGGPGGPGGPMGRMGGRGGDRGGFP--PRGPRGSRGNPSGGGNVQHRAGDWQCPN 525

Query: 203 PGRSISLYLVF*NYTWLLLCSRC 135
           PG          N+ W   C++C
Sbjct: 526 PGCGNQ------NFAWRTECNQC 542

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>RESIL_DROME (Q9V7U0) Pro-resilin precursor|
          Length = 620

 Score = 33.5 bits (75), Expect = 0.24
 Identities = 16/44 (36%), Positives = 20/44 (45%), Gaps = 5/44 (11%)
 Frame = -1

Query: 392 GHQRKPDR-----GEHEGPGGRPAADSGGPGEDRGGHPEQAQAP 276
           G  +KP       G   G GGRP++  G PG   GG P  +  P
Sbjct: 274 GQNQKPSDSYGAPGSGNGNGGRPSSSYGAPGSGPGGRPSDSYGP 317



 Score = 31.6 bits (70), Expect = 0.91
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -1

Query: 377 PDRGEHEGPGGRPAADSGGPGEDRGG 300
           P  G   G GGRP++  G PG+ +GG
Sbjct: 236 PGGGNGNGSGGRPSSSYGAPGQGQGG 261



 Score = 31.6 bits (70), Expect = 0.91
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = -1

Query: 356 GPGGRPAADSGGPGEDRGGHPEQA 285
           GPGGRP+   G PG   GG P  +
Sbjct: 40  GPGGRPSDSYGAPGGGNGGRPSDS 63



 Score = 30.8 bits (68), Expect = 1.6
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = -1

Query: 377 PDRGEHEGPGGRPAADSGGPGEDRGGHP 294
           P +G+  G GGR ++  G PG   GG P
Sbjct: 156 PGQGQGNGNGGRSSSSYGAPGGGNGGRP 183



 Score = 29.6 bits (65), Expect = 3.5
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = -1

Query: 368 GEHEGPGGRPAADSGGPGEDRGGHP 294
           G   G GGRP++  G PG   GG P
Sbjct: 92  GGGNGNGGRPSSSYGAPGGGNGGRP 116

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>KCAB3_MOUSE (P97382) Voltage-gated potassium channel beta-3 subunit (K(+)|
           channel beta-3 subunit) (Kv-beta-3)
          Length = 249

 Score = 32.0 bits (71), Expect = 0.70
 Identities = 14/51 (27%), Positives = 27/51 (52%)
 Frame = -2

Query: 439 IAWCASNPNVSSVITGATKESQIVENMKAXXXXXXXXXXXXEKIEAVIQSK 287
           IAWC  +  VSSV+ G +   Q++E++ +             +I+A++ +K
Sbjct: 194 IAWCLRSEGVSSVLLGVSSAEQLMEHLGSLQVLSQLTPQTVVEIDALLGNK 244

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>KCAB3_RAT (Q63494) Voltage-gated potassium channel beta-3 subunit (K(+)|
           channel beta-3 subunit) (Kv-beta-3) (RCK beta3)
          Length = 404

 Score = 31.6 bits (70), Expect = 0.91
 Identities = 14/51 (27%), Positives = 27/51 (52%)
 Frame = -2

Query: 439 IAWCASNPNVSSVITGATKESQIVENMKAXXXXXXXXXXXXEKIEAVIQSK 287
           IAWC  +  VSSV+ G +   Q++E++ +             +I+A++ +K
Sbjct: 349 IAWCLRSEGVSSVLLGVSSAEQLMEHLGSLQVLGQLTPQTVMEIDALLGNK 399

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>LRP12_MOUSE (Q8BUJ9) Low-density lipoprotein receptor-related protein 12|
           precursor
          Length = 858

 Score = 31.2 bits (69), Expect = 1.2
 Identities = 20/59 (33%), Positives = 26/59 (44%), Gaps = 2/59 (3%)
 Frame = -1

Query: 356 GPGGRPAADSGGPGEDRGGHPEQAQAPRVVQMKHSVLSAVQRVPS--TWWDFFPGRSIS 186
           G GG  +A S   G   G      +AP V   +H + SA+ R+     W  F  GRS S
Sbjct: 690 GSGGNSSAQSTRGGHADGREVSSVEAPSVSPARHQLTSALSRMTQGLRWVRFTLGRSSS 748

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>RLUB_XANAC (Q8PK58) Ribosomal large subunit pseudouridine synthase B (EC|
           5.4.99.-) (rRNA-uridine isomerase B) (rRNA
           pseudouridylate synthase B)
          Length = 550

 Score = 30.8 bits (68), Expect = 1.6
 Identities = 18/45 (40%), Positives = 21/45 (46%)
 Frame = -1

Query: 389 HQRKPDRGEHEGPGGRPAADSGGPGEDRGGHPEQAQAPRVVQMKH 255
           + +K   G   G GG   A SGGPG   GG   Q+Q     Q KH
Sbjct: 416 YAKKGPGGARPGTGGPVGARSGGPGRGAGGGQGQSQGQG--QRKH 458

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>PUR2_ARATH (P52420) Phosphoribosylamine--glycine ligase, chloroplast precursor|
           (EC 6.3.4.13) (GARS) (Glycinamide ribonucleotide
           synthetase) (Phosphoribosylglycinamide synthetase)
          Length = 532

 Score = 30.4 bits (67), Expect = 2.0
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = -2

Query: 121 NILLSSGPDEDDAICHLSRTLPACAAVPCVLSFVGILS 8
           N+L+  G   + A+CH  +  P+C +V C     GI S
Sbjct: 96  NVLVIGGGGREHALCHALKRSPSCDSVLCAPGNAGISS 133

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>RSP3_CAEEL (Q9NEW6) Probable splicing factor, arginine/serine-rich 3 (CeSF2)|
           (CeSF2/ASF)
          Length = 258

 Score = 30.0 bits (66), Expect = 2.7
 Identities = 16/39 (41%), Positives = 19/39 (48%), Gaps = 9/39 (23%)
 Frame = -1

Query: 356 GPGGRPAADS---------GGPGEDRGGHPEQAQAPRVV 267
           GPGGRP  D          GG G  RGG P++    RV+
Sbjct: 88  GPGGRPLQDGGDHRGGDFRGGRGGGRGGGPQRRTGYRVI 126

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>PDZK3_RAT (Q9QZR8) PDZ domain-containing protein 3 (PDZ domain-containing|
            protein 2) (Plakophilin-related armadillo repeat
            protein-interacting PDZ protein)
          Length = 2766

 Score = 30.0 bits (66), Expect = 2.7
 Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
 Frame = -1

Query: 377  PDRGEHEGPGGRPAADS-GGPGEDRGGHPEQAQAPRVVQMKHSVLSAVQRV 228
            P+ G H G G   +++    PG+ R  HP+ ++ P V +  H   S  Q V
Sbjct: 1158 PECGPHPGTGWDGSSEHLCSPGKSREVHPDSSETPTVAEQVHQPESLSQPV 1208

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>OVO_DROME (P51521) Protein ovo (Protein shaven baby)|
          Length = 1351

 Score = 30.0 bits (66), Expect = 2.7
 Identities = 13/24 (54%), Positives = 16/24 (66%)
 Frame = -1

Query: 368 GEHEGPGGRPAADSGGPGEDRGGH 297
           G   GPGG P+A+SGG G   GG+
Sbjct: 585 GGASGPGGGPSANSGGGGGGGGGN 608

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>ETV4_MOUSE (P28322) ETS translocation variant 4 (Polyomavirus enhancer|
           activator 3) (PEA3 protein)
          Length = 555

 Score = 29.6 bits (65), Expect = 3.5
 Identities = 21/65 (32%), Positives = 28/65 (43%)
 Frame = -1

Query: 392 GHQRKPDRGEHEGPGGRPAADSGGPGEDRGGHPEQAQAPRVVQMKHSVLSAVQRVPSTWW 213
           GH   P     + PG + +A + GPG   GG     +     +MK   L   QRVP T+ 
Sbjct: 42  GHAEHPPAAPAQTPGPQVSASARGPGPVAGGSGRMER-----RMKGGYLD--QRVPYTFC 94

Query: 212 DFFPG 198
              PG
Sbjct: 95  SKSPG 99

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>YAN9_SCHPO (Q10074) Hypothetical protein C3H1.09c in chromosome I|
          Length = 656

 Score = 29.6 bits (65), Expect = 3.5
 Identities = 17/58 (29%), Positives = 30/58 (51%), Gaps = 3/58 (5%)
 Frame = +3

Query: 3   NHERMPTN--DNTHGTAAHAGSVRDK*QMASSSSG-PLDNKMFHTLNTPTTQEEPCIV 167
           +   +P N  +NT  T  + GS+RD+   +       L++   H+ N P+T E+P +V
Sbjct: 53  SESNLPNNVAENTTDTPVNYGSIRDENHNSRKGKDVTLNSDEAHSENVPSTSEDPDVV 110

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>SPAG8_HUMAN (Q99932) Sperm-associated antigen 8 (Sperm membrane protein 1)|
           (SMP-1) (HSD-1) (Sperm membrane protein BS-84)
          Length = 426

 Score = 29.6 bits (65), Expect = 3.5
 Identities = 14/34 (41%), Positives = 15/34 (44%)
 Frame = -1

Query: 377 PDRGEHEGPGGRPAADSGGPGEDRGGHPEQAQAP 276
           P  G   GPG  P +   GPG   G HP  A  P
Sbjct: 169 PGSGSGPGPGSGPGS---GPGHGSGSHPGPASGP 199

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>SMRA3_MOUSE (Q6PCN7) SWI/SNF-related matrix-associated actin-dependent|
           regulator of chromatin subfamily A member 3 (EC 3.6.1.-)
           (Sucrose nonfermenting protein 2-like 3) (TNF-response
           element-binding protein) (P113)
          Length = 1003

 Score = 29.3 bits (64), Expect = 4.5
 Identities = 18/39 (46%), Positives = 22/39 (56%), Gaps = 6/39 (15%)
 Frame = -2

Query: 118 ILLSSGPDEDDAICHLSRTLPA---CAAV---PCVLSFV 20
           I+LSSG DE+ AIC  S T P    CA V   PC+   +
Sbjct: 744 IILSSGSDEECAICLDSLTFPVITHCAHVFCKPCICQVI 782

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>ZBP1_HUMAN (Q9H171) Z-DNA-binding protein 1 (Tumor stroma and activated|
           macrophage protein DLM-1)
          Length = 429

 Score = 29.3 bits (64), Expect = 4.5
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = -1

Query: 356 GPGGRPAADSGGPGEDRGGHPEQAQA 279
           GPGG   +  G PGED G  P   Q+
Sbjct: 348 GPGGVAGSGEGEPGEDAGRRPADTQS 373

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>TESK1_HUMAN (Q15569) Dual specificity testis-specific protein kinase 1 (EC|
           2.7.12.1) (Testicular protein kinase 1)
          Length = 626

 Score = 29.3 bits (64), Expect = 4.5
 Identities = 19/53 (35%), Positives = 27/53 (50%)
 Frame = -1

Query: 386 QRKPDRGEHEGPGGRPAADSGGPGEDRGGHPEQAQAPRVVQMKHSVLSAVQRV 228
           +R P RG   GPG  P     GPG   GG P + + P   ++  S +S++ RV
Sbjct: 4   ERPPLRGPGPGPGEVPGEGPPGPG-GTGGGPGRGR-PSSYRVLRSAVSSLARV 54

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>SFR15_HUMAN (O95104) Splicing factor, arginine/serine-rich 15 (CTD-binding|
            SR-like protein RA4)
          Length = 1147

 Score = 28.9 bits (63), Expect = 5.9
 Identities = 15/39 (38%), Positives = 17/39 (43%), Gaps = 4/39 (10%)
 Frame = -1

Query: 377  PDRGEHEGPGGRPAADSGGPG----EDRGGHPEQAQAPR 273
            P  G    PGG P     GPG    EDR G  +  Q P+
Sbjct: 910  PPHGPFVRPGGMPGLGGPGPGPGGPEDRDGRQQPPQQPQ 948

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>SMRA3_HUMAN (Q14527) SWI/SNF-related matrix-associated actin-dependent|
           regulator of chromatin subfamily A member 3 (EC 3.6.1.-)
           (Sucrose nonfermenting protein 2-like 3) (DNA binding
           protein/plasminogen activator inhibitor 1 regulator)
           (Helicase-like tran
          Length = 1009

 Score = 28.9 bits (63), Expect = 5.9
 Identities = 17/39 (43%), Positives = 23/39 (58%), Gaps = 6/39 (15%)
 Frame = -2

Query: 118 ILLSSGPDEDDAICHLSRTLPA---CAAV---PCVLSFV 20
           ++LSSG DE+ AIC  S T+P    CA V   PC+   +
Sbjct: 750 LILSSGSDEECAICLDSLTVPVITHCAHVFCKPCICQVI 788

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>PCLO_CHICK (Q9PU36) Protein piccolo (Aczonin) (Fragment)|
          Length = 5120

 Score = 28.9 bits (63), Expect = 5.9
 Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
 Frame = -1

Query: 332 DSGGPGEDRG--GHPEQAQAPRVVQMKHSVLSAVQRVPST 219
           + G P E RG   HP Q Q+P++VQ +  V    Q+  S+
Sbjct: 109 EQGKPEEQRGLAKHPSQQQSPKLVQQQGPVKPTPQQTESS 148

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>T22D4_HUMAN (Q9Y3Q8) TSC22 domain family protein 4 (TSC22-related-inducible|
           leucine zipper protein 2) (Tsc-22-like protein THG-1)
          Length = 395

 Score = 28.9 bits (63), Expect = 5.9
 Identities = 16/39 (41%), Positives = 20/39 (51%), Gaps = 4/39 (10%)
 Frame = -1

Query: 353 PGGRPAADSGGPGEDRGGHPEQAQAP----RVVQMKHSV 249
           P G P+ D GG G  R G P    AP    RVV++ H +
Sbjct: 44  PNGEPSPDPGGKGTPRNGSPPPG-APSSRFRVVKLPHGL 81

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>DBP10_CRYNE (Q5KMS9) ATP-dependent RNA helicase DBP10 (EC 3.6.1.-)|
          Length = 802

 Score = 28.9 bits (63), Expect = 5.9
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = -1

Query: 371 RGEHEGPGGRPAADSGGPGEDRGGHPEQAQ 282
           RG H  PG +  A+ G  GED GG   + Q
Sbjct: 712 RGRHGPPGQKRKAEDGDGGEDAGGKGRKDQ 741

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>YQKF_BACSU (P54569) Hypothetical oxidoreductase yqkF (EC 1.-.-.-)|
          Length = 306

 Score = 28.9 bits (63), Expect = 5.9
 Identities = 13/29 (44%), Positives = 21/29 (72%)
 Frame = -2

Query: 439 IAWCASNPNVSSVITGATKESQIVENMKA 353
           + +  + P V+SVITGA+K  Q+ EN++A
Sbjct: 250 LQYLLAQPAVASVITGASKIEQLRENIQA 278

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>WDR33_HUMAN (Q9C0J8) WD-repeat protein 33 (WD-repeat protein WDC146)|
          Length = 1336

 Score = 28.9 bits (63), Expect = 5.9
 Identities = 23/63 (36%), Positives = 25/63 (39%), Gaps = 3/63 (4%)
 Frame = -1

Query: 362  HEGPGG---RPAADSGGPGEDRGGHPEQAQAPRVVQMKHSVLSAVQRVPSTWWDFFPGRS 192
            H+GPG    R     GGP EDRGG       P             QRVP +      GRS
Sbjct: 1236 HDGPGTSEHREMEAPGGPSEDRGGKGRGGPGP------------AQRVPKS------GRS 1277

Query: 191  ISL 183
             SL
Sbjct: 1278 SSL 1280

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>VG48_SHV21 (Q01033) Hypothetical gene 48 protein|
          Length = 797

 Score = 28.9 bits (63), Expect = 5.9
 Identities = 13/28 (46%), Positives = 13/28 (46%)
 Frame = -1

Query: 374 DRGEHEGPGGRPAADSGGPGEDRGGHPE 291
           D GE EG  G    D G  GED G   E
Sbjct: 648 DEGEDEGDEGEDEGDEGDEGEDEGDEGE 675

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>SFR15_RAT (Q63627) Splicing factor, arginine/serine-rich 15 (CTD-binding|
           SR-like protein RA4) (Fragment)
          Length = 1048

 Score = 28.9 bits (63), Expect = 5.9
 Identities = 16/44 (36%), Positives = 19/44 (43%), Gaps = 4/44 (9%)
 Frame = -1

Query: 377 PDRGEHEGPGGRPAADSGGPG----EDRGGHPEQAQAPRVVQMK 258
           P  G    PGG P     GPG    EDR G  +Q Q  +  Q +
Sbjct: 803 PPHGPFVRPGGMPGLGGPGPGPGGSEDRDGRQQQPQQQQQQQQQ 846

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>GUX1_HUMGT (P15828) Exoglucanase 1 precursor (EC 3.2.1.91) (Exoglucanase I)|
           (Exocellobiohydrolase I) (1,4-beta-cellobiohydrolase)
           (Beta-glucancellobiohydrolase)
          Length = 525

 Score = 28.9 bits (63), Expect = 5.9
 Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
 Frame = +1

Query: 31  THTGQQHTQEASVTNDK-WRRPHQAHSTTKCF 123
           T  GQ  T +AS+T D  WR  HQ   +T C+
Sbjct: 38  TAGGQCQTVQASITLDSNWRWTHQVSGSTNCY 69

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>RS6_RHOCA (O68126) 30S ribosomal protein S6|
          Length = 144

 Score = 28.9 bits (63), Expect = 5.9
 Identities = 17/40 (42%), Positives = 21/40 (52%), Gaps = 7/40 (17%)
 Frame = -1

Query: 386 QRKPDRGEHEGPGGR-------PAADSGGPGEDRGGHPEQ 288
           Q++ DRG+ E  G R       P  D  GP EDRG  PE+
Sbjct: 105 QKRDDRGDREERGDRGDRGDRGPRGDR-GPREDRGPRPER 143

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>PRP1_HUMAN (P04280) Basic salivary proline-rich protein 1 precursor (Salivary|
           proline-rich protein) [Contains: Basic peptide IB-6;
           Peptide P-H]
          Length = 392

 Score = 28.5 bits (62), Expect = 7.7
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = -1

Query: 368 GEHEGPGGRPAADSGGPGEDRGGHPEQAQAP 276
           G+ +GP  +   +  GP    GG+P+Q QAP
Sbjct: 340 GKPQGPPQQEGNNPQGPPPPAGGNPQQPQAP 370

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>PRB2_HUMAN (P02812) Basic salivary proline-rich protein 2 (Salivary|
           proline-rich protein) (Con1 glycoprotein) [Contains:
           Basic peptide P-F] (Fragment)
          Length = 382

 Score = 28.5 bits (62), Expect = 7.7
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = -1

Query: 368 GEHEGPGGRPAADSGGPGEDRGGHPEQAQAP 276
           G+ +GP  +   +  GP    GG+P+Q QAP
Sbjct: 330 GKPQGPPQQEGNNPQGPPPPAGGNPQQPQAP 360

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>PUF6_YEAST (Q04373) Protein PUF6|
          Length = 656

 Score = 28.5 bits (62), Expect = 7.7
 Identities = 14/53 (26%), Positives = 22/53 (41%)
 Frame = -1

Query: 374 DRGEHEGPGGRPAADSGGPGEDRGGHPEQAQAPRVVQMKHSVLSAVQRVPSTW 216
           D  EHE             G + G H EQ +  +  +M+    + VQ++ S W
Sbjct: 79  DSEEHENENEEKEGKDKSEGGENGNHTEQRKLLKERKMQRKSGTQVQQIKSVW 131

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>TBC16_HUMAN (Q8TBP0) TBC1 domain family member 16|
          Length = 767

 Score = 28.5 bits (62), Expect = 7.7
 Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 3/45 (6%)
 Frame = -3

Query: 201 WPVYLPVSGF---LKLYMAPPV*SVCSACETFCCRVGLMRTTPFV 76
           + VY P  G+   +   +AP +  V    +TF C VGLM+ T FV
Sbjct: 520 YAVYNPAVGYSQGMSDLVAPILAEVLDESDTFWCFVGLMQNTIFV 564

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>SRCA_HUMAN (Q86TD4) Sarcalumenin precursor|
          Length = 932

 Score = 28.5 bits (62), Expect = 7.7
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = -1

Query: 374 DRGEHEGPGGRPAADSGGPGEDRGGHPEQAQAPRVVQ 264
           D+GE  GP    +A+ GG    + G  E++QAP + +
Sbjct: 266 DQGE-PGPAAEASAEPGGAQSVKAGDTEESQAPEMTE 301



 Score = 28.5 bits (62), Expect = 7.7
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = -1

Query: 365 EHEGPGGRPAADSGGPGEDRGGHPEQAQAP 276
           E   PG R   D+ GPGE++ G P  +  P
Sbjct: 104 ESPPPGERDDRDAAGPGEEKNGPPVASALP 133

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>FBRL_GIALA (Q24957) Fibrillarin|
          Length = 327

 Score = 28.5 bits (62), Expect = 7.7
 Identities = 15/31 (48%), Positives = 16/31 (51%)
 Frame = -1

Query: 392 GHQRKPDRGEHEGPGGRPAADSGGPGEDRGG 300
           G  R   RG  +GPGGR     GGPG   GG
Sbjct: 62  GPDRGDRRGPRDGPGGR-----GGPGGPGGG 87

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>SMRA3_RABIT (Q95216) SWI/SNF-related matrix-associated actin-dependent|
           regulator of chromatin subfamily A member 3 (EC 3.6.1.-)
           (Sucrose nonfermenting protein 2-like 3) (RUSH-1)
          Length = 1005

 Score = 28.5 bits (62), Expect = 7.7
 Identities = 16/31 (51%), Positives = 20/31 (64%), Gaps = 3/31 (9%)
 Frame = -2

Query: 118 ILLSSGPDEDDAICHLSRTLPA---CAAVPC 35
           ++LSSG DE+ AIC  S T+P    CA V C
Sbjct: 747 LILSSGSDEECAICLDSLTVPVITHCAHVFC 777

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>RBP56_HUMAN (Q92804) TATA-binding protein-associated factor 2N (RNA-binding|
           protein 56) (TAFII68) (TAF(II)68)
          Length = 592

 Score = 28.5 bits (62), Expect = 7.7
 Identities = 13/26 (50%), Positives = 15/26 (57%)
 Frame = -1

Query: 374 DRGEHEGPGGRPAADSGGPGEDRGGH 297
           DRG + G  G    D GG G DRGG+
Sbjct: 497 DRGGYGGDRGGYGGDRGGYGGDRGGY 522


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 62,618,655
Number of Sequences: 219361
Number of extensions: 1211179
Number of successful extensions: 4382
Number of sequences better than 10.0: 52
Number of HSP's better than 10.0 without gapping: 3924
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4358
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2628831825
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result