ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart16f11 |
|---|---|
| Clone Library Name | barley_pub |
>COEA1_CHICK (P32018) Collagen alpha-1(XIV) chain precursor (Undulin)| Length = 1888 Score = 32.7 bits (73), Expect = 0.53 Identities = 14/27 (51%), Positives = 16/27 (59%) Frame = -3 Query: 482 GSMTPPGATSTGMPGSPFGGGAYGPSG 402 GS PPG + TG PG P G GP+G Sbjct: 1726 GSTGPPGESRTGSPGPPGSPGPRGPAG 1752
>IRS1_RAT (P35570) Insulin receptor substrate 1 (IRS-1) (pp185)| Length = 1235 Score = 32.3 bits (72), Expect = 0.70 Identities = 22/66 (33%), Positives = 30/66 (45%), Gaps = 5/66 (7%) Frame = +3 Query: 180 PTSSTPDPTDHQNTPE--RRADG---TQKRRALPTRLSAGQPAATRSDEVEEERRGCRHE 344 P SS P H P R+ D T R A PTRLS G P A+ V E+++ + + Sbjct: 820 PESSVTHPHHHALQPHLPRKVDTAAQTNSRLARPTRLSLGDPKASTLPRVREQQQQQQQQ 879 Query: 345 EARGGH 362 + H Sbjct: 880 QQSSLH 885
>FA5_BOVIN (Q28107) Coagulation factor V precursor (Activated protein C| cofactor) [Contains: Coagulation factor V heavy chain; Coagulation factor V light chain] Length = 2211 Score = 31.6 bits (70), Expect = 1.2 Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 9/54 (16%) Frame = +3 Query: 144 QFNSTTHGQTLAPTSSTPDPTDHQNTPERRADGTQ---------KRRALPTRLS 278 Q + TH T AP++ +PDPT P R+ TQ + RA+PT +S Sbjct: 1122 QDSDPTHSTT-APSNRSPDPTHSTTAPSNRSPPTQPSQIPNYDLRNRAIPTDVS 1174
>CWC25_USTMA (Q4P6I3) Pre-mRNA-splicing factor CWC25| Length = 520 Score = 31.6 bits (70), Expect = 1.2 Identities = 22/61 (36%), Positives = 26/61 (42%), Gaps = 3/61 (4%) Frame = +3 Query: 204 TDHQNTPERRADGTQKRRALPTRLSAGQPAATRSDEVEEERRGCRHEEARG---GHAATD 374 TD Q+ ERR +KRR R D E RRG RH E+R H+ D Sbjct: 262 TDTQSKDERRRSKEEKRR--------------RHDRDEHRRRGSRHGESRSESRSHSRRD 307 Query: 375 D 377 D Sbjct: 308 D 308
>PSMF1_RAT (Q5XIU5) Proteasome inhibitor PI31 subunit| Length = 271 Score = 31.2 bits (69), Expect = 1.6 Identities = 14/34 (41%), Positives = 18/34 (52%) Frame = -3 Query: 488 GMGSMTPPGATSTGMPGSPFGGGAYGPSGMSPDY 387 G+ + PPGA G PFG PSG +PD+ Sbjct: 227 GLPNRLPPGAVPPGARFDPFGPIGTSPSGPNPDH 260
>PSMF1_MOUSE (Q8BHL8) Proteasome inhibitor PI31 subunit| Length = 271 Score = 31.2 bits (69), Expect = 1.6 Identities = 14/34 (41%), Positives = 18/34 (52%) Frame = -3 Query: 488 GMGSMTPPGATSTGMPGSPFGGGAYGPSGMSPDY 387 G+ + PPGA G PFG PSG +PD+ Sbjct: 227 GLPNRLPPGAVPPGARFDPFGPIGTSPSGPNPDH 260
>ELK1_HUMAN (P19419) ETS domain-containing protein Elk-1| Length = 428 Score = 31.2 bits (69), Expect = 1.6 Identities = 12/24 (50%), Positives = 16/24 (66%) Frame = -3 Query: 467 PGATSTGMPGSPFGGGAYGPSGMS 396 PG T +G PG+P G G GP G++ Sbjct: 123 PGDTVSGKPGTPKGAGMAGPGGLA 146
>DHX33_MOUSE (Q80VY9) Putative ATP-dependent RNA helicase DHX33 (EC 3.6.1.-)| (DEAH box protein 33) Length = 698 Score = 31.2 bits (69), Expect = 1.6 Identities = 16/30 (53%), Positives = 19/30 (63%) Frame = -3 Query: 302 SGGRWLAGGKARRQCPPLLRPVGSPFRRVL 213 +GG AGG RRQ PPL +P SP+R L Sbjct: 30 AGGGGGAGG-GRRQTPPLAQPSASPYREAL 58
>COE4_MOUSE (Q8K4J2) Transcription factor COE4 (Early B-cell factor 4) (EBF-4)| (Olf-1/EBF-like 4) (OE-4) (O/E-4) Length = 599 Score = 31.2 bits (69), Expect = 1.6 Identities = 24/87 (27%), Positives = 29/87 (33%) Frame = -3 Query: 488 GMGSMTPPGATSTGMPGSPFGGGAYGPSGMSPDYSXXXXXXXXXXXXXXXXXXXXXXLHF 309 G+GS PG T G+PGSP G + SP F Sbjct: 479 GLGSYGAPGVTGLGVPGSP--SFLNGSTATSPFAIMPSSPPLAAASSMSLPAAAPTTSVF 536 Query: 308 V*SGGRWLAGGKARRQCPPLLRPVGSP 228 S + K R P+LRP SP Sbjct: 537 SFSPVNMICAVKQRSAFAPVLRPPSSP 563
>HCN4_RABIT (Q9TV66) Potassium/sodium hyperpolarization-activated cyclic| nucleotide-gated channel 4 (Hyperpolarization-activated cation channel 4) (HAC-4) Length = 1175 Score = 30.8 bits (68), Expect = 2.0 Identities = 25/75 (33%), Positives = 32/75 (42%), Gaps = 3/75 (4%) Frame = +3 Query: 153 STTHGQTLAPTSSTPDPTDHQNTPERRADGTQKRRALPTRL---SAGQPAATRSDEVEEE 323 S +HG L P +S+P P P+RRA L L SA QPA + D + Sbjct: 1027 SGSHGSLLLPPASSPPPPPPPPAPQRRATPPLAPGRLSQDLKLISASQPALPQ-DGAQTL 1085 Query: 324 RRGCRHEEARGGHAA 368 RR H + AA Sbjct: 1086 RRASPHSSSGESVAA 1100
>COJA1_HUMAN (Q14993) Collagen alpha-1(XIX) chain precursor (Collagen alpha-1(Y)| chain) Length = 1142 Score = 30.8 bits (68), Expect = 2.0 Identities = 14/29 (48%), Positives = 17/29 (58%) Frame = -3 Query: 482 GSMTPPGATSTGMPGSPFGGGAYGPSGMS 396 GS PG ++ G+PGSP G GP G S Sbjct: 1092 GSPGLPGTSALGLPGSPGAPGPQGPPGPS 1120
>ELK1_MOUSE (P41969) ETS domain-containing protein Elk-1| Length = 429 Score = 30.8 bits (68), Expect = 2.0 Identities = 12/24 (50%), Positives = 16/24 (66%) Frame = -3 Query: 467 PGATSTGMPGSPFGGGAYGPSGMS 396 PG T+TG PG+P G G G G++ Sbjct: 122 PGDTATGKPGTPKGAGMTGQGGLA 145
>IRS1_MOUSE (P35569) Insulin receptor substrate 1 (IRS-1)| Length = 1233 Score = 30.8 bits (68), Expect = 2.0 Identities = 21/55 (38%), Positives = 26/55 (47%), Gaps = 5/55 (9%) Frame = +3 Query: 180 PTSSTPDPTDHQNTPE--RRADG---TQKRRALPTRLSAGQPAATRSDEVEEERR 329 P SS P H P R+ D T R A PTRLS G P A+ V E+++ Sbjct: 820 PESSLTHPHHHVLQPHLPRKVDTAAQTNSRLARPTRLSLGDPKASTLPRVREQQQ 874
>LSD1_HUMAN (O60341) Lysine-specific histone demethylase 1 (EC 1.-.-.-) (Amine| oxidase flavin-containing domain protein 2) (BRAF35-HDAC complex protein BHC110) Length = 852 Score = 30.4 bits (67), Expect = 2.7 Identities = 21/64 (32%), Positives = 28/64 (43%), Gaps = 1/64 (1%) Frame = +3 Query: 165 GQTLAPTSSTPDPTDHQNTPERRADGTQKRRALPTRLSAGQPAATRSDE-VEEERRGCRH 341 G T+ P S+TP T TPE R +KR + R A DE EE R + Sbjct: 86 GPTVVPGSATPMETGIAETPEGRRTSRRKRAKVEYREMDESLANLSEDEYYSEEERNAKA 145 Query: 342 EEAR 353 E+ + Sbjct: 146 EKEK 149
>DHX33_HUMAN (Q9H6R0) Putative ATP-dependent RNA helicase DHX33 (EC 3.6.1.-)| (DEAH box protein 33) Length = 707 Score = 30.4 bits (67), Expect = 2.7 Identities = 15/26 (57%), Positives = 17/26 (65%) Frame = -3 Query: 302 SGGRWLAGGKARRQCPPLLRPVGSPF 225 SGGR GG RRQ PPL +P SP+ Sbjct: 40 SGGR--GGGGGRRQQPPLAQPSASPY 63
>UL49_EHV4 (Q00039) Tegument protein (Gene 11 protein)| Length = 290 Score = 30.4 bits (67), Expect = 2.7 Identities = 17/46 (36%), Positives = 23/46 (50%) Frame = +3 Query: 153 STTHGQTLAPTSSTPDPTDHQNTPERRADGTQKRRALPTRLSAGQP 290 ST+HG+ L+PT +TP P TP +R RA + QP Sbjct: 98 STSHGR-LSPTKTTPHPKSAGVTPPQRVPARPATRAAAPSATPTQP 142
>CO4A2_CAEEL (P17140) Collagen alpha-2(IV) chain precursor (Lethal protein 2)| Length = 1758 Score = 30.4 bits (67), Expect = 2.7 Identities = 13/27 (48%), Positives = 17/27 (62%) Frame = -3 Query: 482 GSMTPPGATSTGMPGSPFGGGAYGPSG 402 G PPG + G+PG+P GA GP+G Sbjct: 484 GVRGPPGDSLNGLPGAPGQRGAPGPNG 510
>YRMC_CAEEL (Q6BEV5) Hypothetical protein R06F6.12| Length = 417 Score = 30.4 bits (67), Expect = 2.7 Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 5/48 (10%) Frame = +2 Query: 2 ERQHMIICLGTPPLREKEKES-----ARSHLYHHEPHRYKHAPHGGRA 130 E H ++ L PP++EK ++S A S YHH H A R+ Sbjct: 215 ENVHQLVQLALPPIKEKAQDSAYNDQAPSTSYHHHHHEQLEAGKSTRS 262
>P53_FELCA (P41685) Cellular tumor antigen p53 (Tumor suppressor p53)| Length = 386 Score = 30.0 bits (66), Expect = 3.5 Identities = 13/31 (41%), Positives = 16/31 (51%) Frame = +1 Query: 220 RRKGEPTGRKSGGHCRRAFPPANQRPPDQTK 312 R+KGEP G +RA PP+ P Q K Sbjct: 283 RKKGEPCPEPPPGSTKRALPPSTSSTPPQKK 313
>MCH1_NEUCR (Q9P3K8) Probable transporter MCH1| Length = 598 Score = 29.6 bits (65), Expect = 4.5 Identities = 23/74 (31%), Positives = 33/74 (44%) Frame = -3 Query: 257 PPLLRPVGSPFRRVLMVRWIGSTASRC*GLSMGGTVKLTLLYPRAPHVERVCTGAVRGGR 78 PP L+ VG P V +G T++ L G L P+A HV+ +G + R Sbjct: 387 PPHLKFVGEPTSAATHVSIVGITSTLV-RLLTGSLTDLLAPSPQARHVQITSSGTLERKR 445 Query: 77 DVI*RILFLSLVAV 36 + R+ FL AV Sbjct: 446 FSLSRVSFLLFFAV 459
>MALK_YERPE (Q8ZAS8) Maltose/maltodextrin import ATP-binding protein malK (EC| 3.6.3.19) Length = 369 Score = 29.6 bits (65), Expect = 4.5 Identities = 19/66 (28%), Positives = 28/66 (42%) Frame = -3 Query: 302 SGGRWLAGGKARRQCPPLLRPVGSPFRRVLMVRWIGSTASRC*GLSMGGTVKLTLLYPRA 123 + G L GGK + PP R +G F+ + + + GL + G VK +Y R Sbjct: 56 TSGELLIGGKRMNEVPPSERGIGMVFQSYALYPHLSVAENMSFGLKLAG-VKKAEIYQRV 114 Query: 122 PHVERV 105 V V Sbjct: 115 NQVAEV 120
>RENT1_HUMAN (Q92900) Regulator of nonsense transcripts 1 (EC 3.6.1.-)| (ATP-dependent helicase RENT1) (Nonsense mRNA reducing factor 1) (NORF1) (Up-frameshift suppressor 1 homolog) (hUpf1) Length = 1129 Score = 29.6 bits (65), Expect = 4.5 Identities = 14/26 (53%), Positives = 15/26 (57%) Frame = -3 Query: 479 SMTPPGATSTGMPGSPFGGGAYGPSG 402 + TPPG PG P GGGA GP G Sbjct: 44 TQTPPGG-----PGGPGGGGAGGPGG 64
>RB27C_DROME (P48809) Heterogeneous nuclear ribonucleoprotein 27C (Hrb27-C)| (hnRNP 48) (HRP48.1) Length = 421 Score = 29.6 bits (65), Expect = 4.5 Identities = 13/33 (39%), Positives = 17/33 (51%) Frame = -3 Query: 488 GMGSMTPPGATSTGMPGSPFGGGAYGPSGMSPD 390 G G +TSTG P P GGG++ M P+ Sbjct: 285 GYGGYDMYNSTSTGAPSGPSGGGSWNSWNMPPN 317
>CO5A2_HUMAN (P05997) Collagen alpha-2(V) chain precursor| Length = 1496 Score = 29.6 bits (65), Expect = 4.5 Identities = 16/33 (48%), Positives = 18/33 (54%), Gaps = 4/33 (12%) Frame = -3 Query: 488 GMGSMTPPGAT----STGMPGSPFGGGAYGPSG 402 G G+ PPGAT S G G P GA GP+G Sbjct: 895 GRGTQGPPGATGFPGSAGRVGPPGPAGAPGPAG 927
>CABL2_MOUSE (Q8K3M5) CDK5 and ABL1 enzyme substrate 2 (Interactor with CDK3 2)| (Ik3-2) Length = 481 Score = 29.6 bits (65), Expect = 4.5 Identities = 12/24 (50%), Positives = 15/24 (62%) Frame = +1 Query: 412 PYAPPPKGLPGIPVLVAPGGVMLP 483 P PP GLPG+P AP G++ P Sbjct: 86 PPPAPPGGLPGLPARPAPQGLLSP 109
>IE63_HHV1E (P36295) Transcriptional regulator IE63 (VMW63) (ICP27)| Length = 511 Score = 29.6 bits (65), Expect = 4.5 Identities = 22/77 (28%), Positives = 33/77 (42%), Gaps = 12/77 (15%) Frame = +3 Query: 180 PTSSTPDPTDHQ--NTPERRAD------GTQKRRALPT----RLSAGQPAATRSDEVEEE 323 P++ TP PT+ Q N P+ G ++ P +++ QP T++ Sbjct: 81 PSTQTPRPTERQGPNDPQPAPHSVWSRLGARRPSCSPEQHGGKVARLQPPPTKAQPARGG 140 Query: 324 RRGCRHEEARGGHAATD 374 RRG R RGG A D Sbjct: 141 RRGRRRGRGRGGPGAAD 157
>LSD1_MOUSE (Q6ZQ88) Lysine-specific histone demethylase 1 (EC 1.-.-.-) (Amine| oxidase flavin-containing domain protein 2) (AOF2 protein) (BRAF35-HDAC complex protein BHC110) Length = 853 Score = 29.6 bits (65), Expect = 4.5 Identities = 21/64 (32%), Positives = 27/64 (42%), Gaps = 1/64 (1%) Frame = +3 Query: 165 GQTLAPTSSTPDPTDHQNTPERRADGTQKRRALPTRLSAGQPAATRSDE-VEEERRGCRH 341 G T P S+TP T TPE R +KR + R A DE EE R + Sbjct: 87 GPTAGPGSATPMETGIAETPEGRRTSRRKRAKVEYREMDESLANLSEDEYYSEEERNAKA 146 Query: 342 EEAR 353 E+ + Sbjct: 147 EKEK 150
>CO1A2_RANCA (O42350) Collagen alpha-2(I) chain precursor| Length = 1355 Score = 29.6 bits (65), Expect = 4.5 Identities = 14/31 (45%), Positives = 16/31 (51%), Gaps = 4/31 (12%) Frame = -3 Query: 482 GSMTPPGATST----GMPGSPFGGGAYGPSG 402 G PPG+ T G PG G G +GPSG Sbjct: 568 GDFGPPGSAGTRGERGAPGESGGAGPHGPSG 598
>IE63_HHV11 (P10238) Transcriptional regulator IE63 (VMW63) (ICP27)| Length = 512 Score = 29.6 bits (65), Expect = 4.5 Identities = 22/77 (28%), Positives = 33/77 (42%), Gaps = 12/77 (15%) Frame = +3 Query: 180 PTSSTPDPTDHQ--NTPERRAD------GTQKRRALPT----RLSAGQPAATRSDEVEEE 323 P++ TP PT+ Q N P+ G ++ P +++ QP T++ Sbjct: 81 PSTQTPRPTERQGPNDPQPAPHSVWSRLGARRPSCSPEQHGGKVARLQPPPTKAQPARGG 140 Query: 324 RRGCRHEEARGGHAATD 374 RRG R RGG A D Sbjct: 141 RRGRRRGRGRGGPGAAD 157
>COIA1_MOUSE (P39061) Collagen alpha-1(XVIII) chain precursor [Contains:| Endostatin] Length = 1774 Score = 29.6 bits (65), Expect = 4.5 Identities = 12/22 (54%), Positives = 14/22 (63%) Frame = +1 Query: 406 DGPYAPPPKGLPGIPVLVAPGG 471 +G YAP P GLPG+P P G Sbjct: 947 NGSYAPGPAGLPGVPGKEGPPG 968
>PSMF1_PONPY (Q5RDN3) Proteasome inhibitor PI31 subunit| Length = 271 Score = 29.3 bits (64), Expect = 5.9 Identities = 13/34 (38%), Positives = 17/34 (50%) Frame = -3 Query: 488 GMGSMTPPGATSTGMPGSPFGGGAYGPSGMSPDY 387 G+ + PPGA G PFG P G +PD+ Sbjct: 227 GLPNRLPPGAVPPGARFDPFGPIGTSPPGPNPDH 260
>PSMF1_HUMAN (Q92530) Proteasome inhibitor PI31 subunit (hPI31)| Length = 271 Score = 29.3 bits (64), Expect = 5.9 Identities = 13/34 (38%), Positives = 17/34 (50%) Frame = -3 Query: 488 GMGSMTPPGATSTGMPGSPFGGGAYGPSGMSPDY 387 G+ + PPGA G PFG P G +PD+ Sbjct: 227 GLPNRLPPGAVPPGARFDPFGPIGTSPPGPNPDH 260
>COCA1_CHICK (P13944) Collagen alpha-1(XII) chain precursor (Fibrochimerin)| Length = 3124 Score = 29.3 bits (64), Expect = 5.9 Identities = 12/24 (50%), Positives = 14/24 (58%), Gaps = 1/24 (4%) Frame = +1 Query: 403 PDGPYAPP-PKGLPGIPVLVAPGG 471 P GP PP P G PG+P + P G Sbjct: 2853 PTGPRGPPGPAGAPGVPGVAGPSG 2876
>DEGP9_ARATH (Q9FL12) Protease Do-like 9 (EC 3.4.21.-)| Length = 592 Score = 29.3 bits (64), Expect = 5.9 Identities = 19/79 (24%), Positives = 33/79 (41%) Frame = +3 Query: 123 GARIQQCQFNSTTHGQTLAPTSSTPDPTDHQNTPERRADGTQKRRALPTRLSAGQPAATR 302 G +++ N + Q+ P S++ + +P RR+ G K+R L AG R Sbjct: 23 GGEVKEASANEASLPQSPEPVSAS----EANPSPSRRSRGRGKKRRLNNESEAGN---QR 75 Query: 303 SDEVEEERRGCRHEEARGG 359 + E R H + + G Sbjct: 76 TSSPERSRSRLHHSDTKNG 94
>CO4A4_HUMAN (P53420) Collagen alpha-4(IV) chain precursor| Length = 1690 Score = 29.3 bits (64), Expect = 5.9 Identities = 14/29 (48%), Positives = 18/29 (62%), Gaps = 1/29 (3%) Frame = -3 Query: 482 GSMTPPG-ATSTGMPGSPFGGGAYGPSGM 399 G + PPG A G+PG P GA+GP G+ Sbjct: 858 GDVGPPGPAGMKGLPGLPGRPGAHGPPGL 886
>LPXK_CHRVO (Q7NSS4) Tetraacyldisaccharide 4'-kinase (EC 2.7.1.130) (Lipid A| 4'-kinase) Length = 339 Score = 29.3 bits (64), Expect = 5.9 Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 1/32 (3%) Frame = +1 Query: 397 LMPDGPYAPPPKGLPGIPVLVAPG-GVMLPMP 489 L+P+GP PP L + +V G G LP+P Sbjct: 176 LLPNGPLREPPSRLAAVDAVVVNGEGAQLPLP 207
>EX5C_BUCAP (Q8K9B0) Exodeoxyribonuclease V gamma chain (EC 3.1.11.5)| Length = 1061 Score = 28.9 bits (63), Expect = 7.7 Identities = 11/19 (57%), Positives = 13/19 (68%) Frame = +3 Query: 21 YVSEHHRYERKKKNPLDHI 77 YVSEHH Y+ KK +HI Sbjct: 706 YVSEHHDYKNNKKEIFEHI 724
>QCRB_STRLI (Q9ZFB6) Ubiquinol-cytochrome c reductase cytochrome b subunit| Length = 549 Score = 28.9 bits (63), Expect = 7.7 Identities = 23/77 (29%), Positives = 33/77 (42%) Frame = +3 Query: 132 IQQCQFNSTTHGQTLAPTSSTPDPTDHQNTPERRADGTQKRRALPTRLSAGQPAATRSDE 311 I Q Q ++ T + P PT +N ER+ GTQK RA + G+ + Sbjct: 478 ISQEQLHTLTAHEQYKPAEI--GPTVDENGVERKVSGTQKLRAKLSESYYGEESQIPKPT 535 Query: 312 VEEERRGCRHEEARGGH 362 VEE ++E GH Sbjct: 536 VEE------YKEITSGH 546
>CO9A3_HUMAN (Q14050) Collagen alpha-3(IX) chain precursor| Length = 684 Score = 28.9 bits (63), Expect = 7.7 Identities = 12/28 (42%), Positives = 14/28 (50%) Frame = -3 Query: 485 MGSMTPPGATSTGMPGSPFGGGAYGPSG 402 +G PPG G+PG P G GP G Sbjct: 106 LGPPGPPGLGGKGLPGPPGEAGVSGPPG 133
>FOXD2_MOUSE (O35392) Forkhead box protein D2 (Mesoderm/mesenchyme forkhead 2)| (MF-2) Length = 492 Score = 28.9 bits (63), Expect = 7.7 Identities = 15/31 (48%), Positives = 17/31 (54%) Frame = -3 Query: 488 GMGSMTPPGATSTGMPGSPFGGGAYGPSGMS 396 G G PPG+ G PGSPF A GP G + Sbjct: 418 GGGGAAPPGS-GDGSPGSPFAAAA-GPGGQA 446
>EMID1_HUMAN (Q96A84) EMI domain-containing protein 1 precursor (Protein Emu1)| (Emilin and multimerin domain-containing protein 1) Length = 441 Score = 28.9 bits (63), Expect = 7.7 Identities = 15/28 (53%), Positives = 17/28 (60%), Gaps = 1/28 (3%) Frame = -3 Query: 482 GSMTPPGATS-TGMPGSPFGGGAYGPSG 402 G M PPG TG+PGSP G GP+G Sbjct: 300 GPMGPPGPPGPTGVPGSPGHIGPPGPTG 327
>CO9A2_CHICK (P12108) Collagen alpha-2(IX) chain precursor| Length = 677 Score = 28.9 bits (63), Expect = 7.7 Identities = 14/29 (48%), Positives = 17/29 (58%) Frame = -3 Query: 488 GMGSMTPPGATSTGMPGSPFGGGAYGPSG 402 G+G+M PPG G PG P G +GP G Sbjct: 549 GVGAMGPPGPP--GPPGPPGEQGLHGPMG 575 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 71,005,631 Number of Sequences: 219361 Number of extensions: 1463906 Number of successful extensions: 8321 Number of sequences better than 10.0: 42 Number of HSP's better than 10.0 without gapping: 6079 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 8199 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 3420806017 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
