ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart16f07 |
|---|---|
| Clone Library Name | barley_pub |
>OR7C1_HUMAN (O76099) Olfactory receptor 7C1 (Olfactory receptor TPCR86)| Length = 320 Score = 30.0 bits (66), Expect = 1.4 Identities = 14/40 (35%), Positives = 23/40 (57%) Frame = -1 Query: 376 GVHLATAATPGGRQLMIGFVMSVSVPPARSRLLFYHRSLD 257 GV+L++AATP R ++ VM V P + ++ R+ D Sbjct: 257 GVYLSSAATPSSRTSLVASVMYTMVTPMLNPFIYSLRNTD 296
>SYC_BUCAI (P57558) Cysteinyl-tRNA synthetase (EC 6.1.1.16) (Cysteine--tRNA| ligase) (CysRS) Length = 464 Score = 29.6 bits (65), Expect = 1.8 Identities = 18/51 (35%), Positives = 24/51 (47%) Frame = -1 Query: 391 GLGRPGVHLATAATPGGRQLMIGFVMSVSVPPARSRLLFYHRSLDRSASCC 239 G GRPG H+ +A + F S+ + S LLF H +RS S C Sbjct: 199 GKGRPGWHIECSAITN-----VFFNNSIDIHGGGSDLLFPHHENERSQSIC 244
>NIT4_NEUCR (P28349) Nitrogen assimilation transcription factor nit-4| Length = 1090 Score = 28.9 bits (63), Expect = 3.1 Identities = 15/39 (38%), Positives = 20/39 (51%) Frame = +3 Query: 111 QSPHHLYLSMKKNAVKSWEDPWSYMSMSMSTFLAQETHW 227 Q PHH +++ ++ P S SMSMS LA T W Sbjct: 786 QQPHHNHMTYQQQQHNLLTHPVSASSMSMSDTLATITAW 824
>IBP3_BOVIN (P20959) Insulin-like growth factor-binding protein 3 precursor| (IGFBP-3) (IBP-3) (IGF-binding protein 3) Length = 291 Score = 27.7 bits (60), Expect = 6.8 Identities = 11/24 (45%), Positives = 14/24 (58%) Frame = +3 Query: 324 PIISCRPPGVAAVAK*TPGRPSPP 395 P++ C P AVA+ P PSPP Sbjct: 36 PVVRCEPCDARAVAQCAPPPPSPP 59
>YHX7_YEAST (P38867) Hypothetical 51.9 kDa protein in CTR2-STB5 intergenic| region Length = 452 Score = 27.7 bits (60), Expect = 6.8 Identities = 9/23 (39%), Positives = 15/23 (65%) Frame = -3 Query: 206 ECTHAHAHVAPWILPRLHCVFFH 138 EC H+ A +AP ++P +H + H Sbjct: 352 ECNHSKAPIAPTMMPPVHHILVH 374
>ACCA_VIBVY (Q7MIH6) Acetyl-coenzyme A carboxylase carboxyl transferase subunit| alpha (EC 6.4.1.2) (Acetyl-CoA carboxylase carboxyltransferase subunit alpha) (ACCase subunit alpha) Length = 319 Score = 27.7 bits (60), Expect = 6.8 Identities = 11/23 (47%), Positives = 15/23 (65%) Frame = -3 Query: 380 AWSSLGHRRHPRRPATDDRLRHV 312 AW + RHP+RP T D ++HV Sbjct: 60 AWETAQLARHPQRPYTLDYVKHV 82
>ACCA_VIBVU (Q8DBE5) Acetyl-coenzyme A carboxylase carboxyl transferase subunit| alpha (EC 6.4.1.2) (Acetyl-CoA carboxylase carboxyltransferase subunit alpha) (ACCase subunit alpha) Length = 319 Score = 27.7 bits (60), Expect = 6.8 Identities = 11/23 (47%), Positives = 15/23 (65%) Frame = -3 Query: 380 AWSSLGHRRHPRRPATDDRLRHV 312 AW + RHP+RP T D ++HV Sbjct: 60 AWETAQLARHPQRPYTLDYVKHV 82
>ACCA_PHOLL (Q7N8N1) Acetyl-coenzyme A carboxylase carboxyl transferase subunit| alpha (EC 6.4.1.2) (Acetyl-CoA carboxylase carboxyltransferase subunit alpha) (ACCase subunit alpha) Length = 319 Score = 27.7 bits (60), Expect = 6.8 Identities = 11/23 (47%), Positives = 14/23 (60%) Frame = -3 Query: 380 AWSSLGHRRHPRRPATDDRLRHV 312 AW RHPRRP T D ++H+ Sbjct: 60 AWQIAQLARHPRRPYTLDYIQHI 82
>YMI1_YEAST (Q04545) Hypothetical 141.5 kDa zinc finger protein in TUB1-CPR3| intergenic region Length = 1251 Score = 27.3 bits (59), Expect = 8.9 Identities = 16/67 (23%), Positives = 29/67 (43%), Gaps = 6/67 (8%) Frame = +2 Query: 41 NIVSLHGPNYIVLPADHGPLIQTTIATSFVPKHEKKRSEVVGGSMEL------HEHEHEY 202 NI+ + G +LP PL +T + K +K + G ++L + H + Sbjct: 136 NIIQIQGNKQTILPTPSNPLAKTAVQLKKAAKEKKNGKQ---GKLDLSPSYGANNHSTDV 192 Query: 203 IPSSGDT 223 PS G++ Sbjct: 193 SPSVGNS 199
>FOXD2_HUMAN (O60548) Forkhead box protein D2 (Forkhead-related protein FKHL17)| (Forkhead-related transcription factor 9) (FREAC-9) Length = 497 Score = 27.3 bits (59), Expect = 8.9 Identities = 12/41 (29%), Positives = 20/41 (48%) Frame = -1 Query: 391 GLGRPGVHLATAATPGGRQLMIGFVMSVSVPPARSRLLFYH 269 G G PG A AA PGG+ ++ + + ++ P + H Sbjct: 433 GEGSPGPPFAAAAGPGGQAQVLAMLTAPALAPVAGHIRLSH 473
>SAPD_HAEIN (P45288) Peptide transport system ATP-binding protein sapD| Length = 349 Score = 27.3 bits (59), Expect = 8.9 Identities = 14/55 (25%), Positives = 25/55 (45%) Frame = +3 Query: 18 ITIYCKYVILYHCTDQITSSSLLIMVH*FKQQSPHHLYLSMKKNAVKSWEDPWSY 182 I+ +C + + +C S+ I++ +SPHH Y NAV + P + Sbjct: 222 ISEWCDQISVLYCGQNTESAPTEILI-----ESPHHPYTQALINAVPDFTQPLGF 271
>ACCA_VIBCH (Q9KPW8) Acetyl-coenzyme A carboxylase carboxyl transferase subunit| alpha (EC 6.4.1.2) (Acetyl-CoA carboxylase carboxyltransferase subunit alpha) (ACCase subunit alpha) Length = 319 Score = 27.3 bits (59), Expect = 8.9 Identities = 11/23 (47%), Positives = 14/23 (60%) Frame = -3 Query: 380 AWSSLGHRRHPRRPATDDRLRHV 312 AW RHP+RP T D L+H+ Sbjct: 60 AWQVAQLARHPQRPYTLDYLKHI 82
>OR7C2_HUMAN (O60412) Olfactory receptor 7C2 (Olfactory receptor 19-18)| (OR19-18) Length = 320 Score = 27.3 bits (59), Expect = 8.9 Identities = 14/44 (31%), Positives = 22/44 (50%) Frame = -1 Query: 376 GVHLATAATPGGRQLMIGFVMSVSVPPARSRLLFYHRSLDRSAS 245 GV+L++A TP R + VM V P + ++ R+ D S Sbjct: 257 GVYLSSAVTPPSRTSLAASVMHTMVTPMLNPFIYSLRNKDMKGS 300 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 57,736,197 Number of Sequences: 219361 Number of extensions: 1026528 Number of successful extensions: 2685 Number of sequences better than 10.0: 13 Number of HSP's better than 10.0 without gapping: 2595 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2685 length of database: 80,573,946 effective HSP length: 109 effective length of database: 56,663,597 effective search space used: 1359926328 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
