ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | rbart16e01 |
|---|---|
| Clone Library Name | barley_pub |
>NEUM_BOVIN (P06836) Neuromodulin (Axonal membrane protein GAP-43)| (Growth-associated protein 43) (Calmodulin-binding protein P-57) Length = 239 Score = 32.3 bits (72), Expect = 0.59 Identities = 18/62 (29%), Positives = 31/62 (50%) Frame = +2 Query: 257 PPRNWSATARSAPAAQKSTKNPPALSTADQLDPDDAAEADVETSPTNASWTAADADDEPS 436 P + +A + A + ST N P+ D ++ +ADV + T A+ TA A+D + Sbjct: 131 PSEEKAGSAETESATKASTDNSPSSKAEDAPAKEEPKQADVPAAVTAAAATAPAAEDAAA 190 Query: 437 VA 442 +A Sbjct: 191 MA 192
>SYF2_NEUCR (Q7RZK5) Pre-mRNA-splicing factor syf-2| Length = 339 Score = 32.0 bits (71), Expect = 0.78 Identities = 23/103 (22%), Positives = 43/103 (41%) Frame = +2 Query: 113 PYVRRSPFPELVSEFTDGDRAPGTSTSDRSNHEIFYTIDKVGSRG**KPPRNWSATARSA 292 P +R PE +E T + ST++ +N + + ++ + A Sbjct: 3 PEKKRKTEPEDKAEVTQQENDVAESTTEPNNQTVTDSKEE--------------PSVTEA 48 Query: 293 PAAQKSTKNPPALSTADQLDPDDAAEADVETSPTNASWTAADA 421 A S+ +PP LS ++ PD AA + ++P ++ A A Sbjct: 49 ALATTSSSSPPVLSASETAQPDTAATSQSSSTPPTSTSAAESA 91
>NEUM_RAT (P07936) Neuromodulin (Axonal membrane protein GAP-43)| (Growth-associated protein 43) (Protein F1) Length = 226 Score = 31.2 bits (69), Expect = 1.3 Identities = 17/62 (27%), Positives = 30/62 (48%) Frame = +2 Query: 257 PPRNWSATARSAPAAQKSTKNPPALSTADQLDPDDAAEADVETSPTNASWTAADADDEPS 436 P + +A + AA+ +T N P+ D ++ +ADV + T+A+ T A+D Sbjct: 121 PSEEKAGSAETESAAKATTDNSPSSKAEDGPAKEEPKQADVPAAVTDAAATTPAAEDAAK 180 Query: 437 VA 442 A Sbjct: 181 AA 182
>NEUM_MOUSE (P06837) Neuromodulin (Axonal membrane protein GAP-43)| (Growth-associated protein 43) (Calmodulin-binding protein P-57) Length = 227 Score = 30.8 bits (68), Expect = 1.7 Identities = 17/62 (27%), Positives = 31/62 (50%) Frame = +2 Query: 257 PPRNWSATARSAPAAQKSTKNPPALSTADQLDPDDAAEADVETSPTNASWTAADADDEPS 436 P + +A + AA+ +T N P+ D ++ +ADV + T+A+ T A+D + Sbjct: 121 PSEEKAGSAETESAAKATTDNSPSSKAEDGPAKEEPKQADVPAAVTDAAATTPAAEDAAT 180 Query: 437 VA 442 A Sbjct: 181 KA 182
>Y2366_HALSA (Q9HMV9) UPF0148 protein Vng2366c| Length = 182 Score = 30.4 bits (67), Expect = 2.3 Identities = 20/57 (35%), Positives = 28/57 (49%) Frame = +2 Query: 272 SATARSAPAAQKSTKNPPALSTADQLDPDDAAEADVETSPTNASWTAADADDEPSVA 442 +AT +SAP ++PPA DP + T+P +S TAA DD P+ A Sbjct: 78 TATTQSAP-----DRSPPA-------DPQATPHSSPPTTPDTSSSTAAATDDVPTAA 122 Score = 29.6 bits (65), Expect = 3.8 Identities = 27/94 (28%), Positives = 38/94 (40%) Frame = +2 Query: 161 DGDRAPGTSTSDRSNHEIFYTIDKVGSRG**KPPRNWSATARSAPAAQKSTKNPPALSTA 340 DG+ T D ++ E T R PP + AT S+P T + A +T Sbjct: 60 DGETFCPTCQHDDNDDEPTATTQSAPDRS---PPADPQATPHSSPPTTPDTSSSTAAATD 116 Query: 341 DQLDPDDAAEADVETSPTNASWTAADADDEPSVA 442 D P AA E +PT T A + E ++A Sbjct: 117 DV--PTAAARDRPEHAPTAEPTTPATEELESTIA 148
>K0226_HUMAN (Q92622) Protein KIAA0226| Length = 972 Score = 29.3 bits (64), Expect = 5.0 Identities = 19/69 (27%), Positives = 33/69 (47%), Gaps = 5/69 (7%) Frame = +2 Query: 257 PPRN-WSATARSAPAAQKSTKNPP----ALSTADQLDPDDAAEADVETSPTNASWTAADA 421 PPR + +PA ++ + PP AL+ L P++ + + + TSP ASW ++ Sbjct: 254 PPRKPQESRGHVSPAEDQTIQAPPVSVSALARDSPLTPNEMSSSTL-TSPIEASWVSSQN 312 Query: 422 DDEPSVANG 448 D + G Sbjct: 313 DSPGDASEG 321
>NEUM_SERCA (Q98987) Neuromodulin (Axonal membrane protein GAP-43)| (Growth-associated protein 43) (Fragment) Length = 241 Score = 29.3 bits (64), Expect = 5.0 Identities = 17/46 (36%), Positives = 24/46 (52%) Frame = +2 Query: 287 SAPAAQKSTKNPPALSTADQLDPDDAAEADVETSPTNASWTAADAD 424 S P A ST N P+L + D ++ +ADV + T A+ T A D Sbjct: 146 STPKA--STDNSPSLKADEAQDKEEPKQADVPAADTTATTTPAAED 189
>ZEP2_HUMAN (P31629) Human immunodeficiency virus type I enhancer-binding protein| 2 (HIV-EP2) (MHC-binding protein 2) (MBP-2) Length = 2446 Score = 29.3 bits (64), Expect = 5.0 Identities = 32/116 (27%), Positives = 54/116 (46%), Gaps = 6/116 (5%) Frame = +2 Query: 101 SRLRPYVRRSPFPELV-----SEFTDGDRAPGTSTSDRS-NHEIFYTIDKVGSRG**KPP 262 S ++ + R P+LV SE DG ++ +S S S + Y SR P Sbjct: 1481 SDIKKDLSRPQKPQLVRQGCASEPKDGLQSGSSSFSSLSPSSSQDYPSVSPSSREPFLPS 1540 Query: 263 RNWSATARSAPAAQKSTKNPPALSTADQLDPDDAAEADVETSPTNASWTAADADDE 430 + + +R+ QKS+ + ++D+LD D+ A +D+ SP ++S A D E Sbjct: 1541 KEMLSGSRAPLPGQKSSGPSESKESSDELDIDETA-SDMSMSPQSSSLPAGDGQLE 1595
>ERF2_SCHPO (O74718) Eukaryotic peptide chain release factor GTP-binding| subunit (ERF2) (Translation release factor 3) (Polypeptide release factor 3) (ERF3) (ERF-3) Length = 662 Score = 29.3 bits (64), Expect = 5.0 Identities = 17/57 (29%), Positives = 25/57 (43%) Frame = +2 Query: 272 SATARSAPAAQKSTKNPPALSTADQLDPDDAAEADVETSPTNASWTAADADDEPSVA 442 + T +APAAQ T+ P T++ + AA ET +A A P+ A Sbjct: 145 TTTKPAAPAAQSKTETPAPKVTSESTKKETAAPPPQETPTKSADAELAKTPSAPAAA 201
>BUB1_SCHPO (O94751) Checkpoint serine/threonine-protein kinase bub1 (EC| 2.7.11.1) Length = 1044 Score = 28.9 bits (63), Expect = 6.6 Identities = 18/66 (27%), Positives = 32/66 (48%) Frame = +2 Query: 8 TKFLPKEL*TLEKNVDMEACRSR*SGFKNHISRLRPYVRRSPFPELVSEFTDGDRAPGTS 187 +K P ++ + KN+D S+ +KN + L R PF EL+ + A GT+ Sbjct: 457 SKNYPSKIYSPNKNLDFSHTASKAETYKNS-NELENVKREQPFSELLPSTLQEETATGTT 515 Query: 188 TSDRSN 205 ++ +N Sbjct: 516 STTFAN 521
>SERA_ENTHI (P21138) Serine-rich 25 kDa antigen protein (SHEHP) (SREHP)| Length = 233 Score = 28.9 bits (63), Expect = 6.6 Identities = 28/115 (24%), Positives = 45/115 (39%), Gaps = 9/115 (7%) Frame = +2 Query: 116 YVRRSPFPELVSEFTDGDRAPGTSTSDRSNH-------EIFYTIDKVGSRG**KPPRNWS 274 +++ PE + E + +++ SN E + D S KP Sbjct: 33 FLKNEASPEKLEEAEEKEKSSSAKPESSSNEDNEDDEDEKASSSDNSESSSSDKPDNKPE 92 Query: 275 ATARSAPAAQKSTK--NPPALSTADQLDPDDAAEADVETSPTNASWTAADADDEP 433 A++ P A S K N P S++D+ PD+ EA P N A + D+P Sbjct: 93 ASSSDKPEASSSDKPDNKPEASSSDK--PDNKPEASSSDKPDNK--PEASSSDKP 143
>RDRP_LYCVA (P14240) RNA-directed RNA polymerase (EC 2.7.7.48)| Length = 2210 Score = 28.9 bits (63), Expect = 6.6 Identities = 17/59 (28%), Positives = 28/59 (47%) Frame = +3 Query: 30 CKHLKKTWTWKHADRGDQDSRTTFPVCDRTYEDHLFQSLYLNSLMEIERLGQARLIDQI 206 C HL +T + + G F + +ED++ L L +E+E LG R++D I Sbjct: 2009 CLHLLRTDSVFKVNDG------VFDIRSEEFEDYMEDPLILGDSLELELLGSKRILDGI 2061
>TCOF_MOUSE (O08784) Treacle protein (Treacher Collins syndrome protein homolog)| Length = 1320 Score = 28.9 bits (63), Expect = 6.6 Identities = 16/51 (31%), Positives = 28/51 (54%), Gaps = 1/51 (1%) Frame = +2 Query: 254 KPPRNWSATARSAPAAQKSTKNPPALSTADQLDPDDA-AEADVETSPTNAS 403 K PR+ ++ ++ ++ K P +A +LDPD + E VE +PT +S Sbjct: 985 KAPRSSEDSSDTSSEDEEDAKRPQMPKSAHRLDPDPSQKETVVEETPTESS 1035
>NEUM_PANTR (Q5IS67) Neuromodulin (Axonal membrane protein GAP-43)| (Growth-associated protein 43) Length = 238 Score = 28.5 bits (62), Expect = 8.6 Identities = 16/57 (28%), Positives = 28/57 (49%) Frame = +2 Query: 272 SATARSAPAAQKSTKNPPALSTADQLDPDDAAEADVETSPTNASWTAADADDEPSVA 442 + +A + A + ST N P+ D ++ +ADV + T A+ T A+D + A Sbjct: 135 AGSAETESATKASTDNSPSSKAEDAPAKEEPKQADVPAAVTAAAATTPAAEDAAAKA 191
>NEUM_HUMAN (P17677) Neuromodulin (Axonal membrane protein GAP-43)| (Growth-associated protein 43) (PP46) (Neural phosphoprotein B-50) Length = 238 Score = 28.5 bits (62), Expect = 8.6 Identities = 16/57 (28%), Positives = 28/57 (49%) Frame = +2 Query: 272 SATARSAPAAQKSTKNPPALSTADQLDPDDAAEADVETSPTNASWTAADADDEPSVA 442 + +A + A + ST N P+ D ++ +ADV + T A+ T A+D + A Sbjct: 135 AGSAETESATKASTDNSPSSKAEDAPAKEEPKQADVPAAVTAAAATTPAAEDAAAKA 191
>LRFN3_HUMAN (Q9BTN0) Leucine-rich repeat and fibronectin type-III| domain-containing protein 3 precursor Length = 628 Score = 28.5 bits (62), Expect = 8.6 Identities = 15/43 (34%), Positives = 20/43 (46%) Frame = +2 Query: 320 PPALSTADQLDPDDAAEADVETSPTNASWTAADADDEPSVANG 448 PP L+ + DP + D T P+ AS +A AD P G Sbjct: 388 PPQLANSTSCDPPRDGDPDALTPPSAASASAKVADTGPPTDRG 430
>K0226_MOUSE (Q80U62) Protein KIAA0226| Length = 956 Score = 28.5 bits (62), Expect = 8.6 Identities = 20/56 (35%), Positives = 27/56 (48%), Gaps = 3/56 (5%) Frame = +2 Query: 290 APAAQKSTKNP-PALSTADQLDPDDAAEADVET--SPTNASWTAADADDEPSVANG 448 +PA ++T P P+ ST Q P A E T SP ASW ++ D V+ G Sbjct: 268 SPAETQTTPAPLPSDSTLAQDSPLTAQEMSDSTLTSPLEASWVSSQNDSPSDVSEG 323
>RL12_HALSA (P05768) 50S ribosomal protein L12P ('A' type) (HL20)|
Length = 114
Score = 28.5 bits (62), Expect = 8.6
Identities = 18/52 (34%), Positives = 25/52 (48%)
Frame = +2
Query: 281 ARSAPAAQKSTKNPPALSTADQLDPDDAAEADVETSPTNASWTAADADDEPS 436
A +APAA + + AD D D+ A+AD +A D D+EPS
Sbjct: 57 AAAAPAAAPAASGSDDEAAADDGDDDEEADADEAAEAEDA---GDDDDEEPS 105
>2A5B_RABIT (Q28647) Serine/threonine-protein phosphatase 2A 56 kDa regulatory| subunit beta isoform (PP2A, B subunit, B' beta isoform) (PP2A, B subunit, B56 beta isoform) (PP2A, B subunit, PR61 beta isoform) (PP2A, B subunit, R5 beta isoform) (PP2A, B sub Length = 500 Score = 28.5 bits (62), Expect = 8.6 Identities = 13/19 (68%), Positives = 16/19 (84%) Frame = -3 Query: 199 SIRRACPRRSISISEFRYK 143 S+RRA PRRS S S+FRY+ Sbjct: 35 SLRRARPRRSHSSSQFRYQ 53
>2A5B_HUMAN (Q15173) Serine/threonine-protein phosphatase 2A 56 kDa regulatory| subunit beta isoform (PP2A, B subunit, B' beta isoform) (PP2A, B subunit, B56 beta isoform) (PP2A, B subunit, PR61 beta isoform) (PP2A, B subunit, R5 beta isoform) Length = 497 Score = 28.5 bits (62), Expect = 8.6 Identities = 13/19 (68%), Positives = 16/19 (84%) Frame = -3 Query: 199 SIRRACPRRSISISEFRYK 143 S+RRA PRRS S S+FRY+ Sbjct: 35 SLRRARPRRSHSSSQFRYQ 53 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 52,131,557 Number of Sequences: 219361 Number of extensions: 915766 Number of successful extensions: 2965 Number of sequences better than 10.0: 20 Number of HSP's better than 10.0 without gapping: 2854 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2960 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 2909956200 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)