Clone Name | rbart16d12 |
---|---|
Clone Library Name | barley_pub |
>dbj|AK104770.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-039-A07, full insert sequence Length = 1279 Score = 218 bits (110), Expect = 1e-53 Identities = 237/279 (84%), Gaps = 3/279 (1%) Strand = Plus / Minus Query: 217 tctgcaaaatggcctaactaacttgcatttgcgaatgcgacgcccttctcaattgaagat 276 |||||||||||||||||||| |||||||| ||| || |||||||||||||||| Sbjct: 1098 tctgcaaaatggcctaactac---gcatttgcaaatttgatacccttctcaattgaagcc 1042 Query: 277 ttgagctcgcccttgagagcttccaacccttccttctcaaactccgtcagctgacccaac 336 |||||||||||||| ||| |||| |||||||||||||| || | |||||| |||||| Sbjct: 1041 ttgagctcgcccttaagattctccagtccttccttctcaaagtctgacagctggcccaac 982 Query: 337 ccgagcacttcctcgactccattcttcccaagcctcaccttggaagcaaagaatggcagc 396 || || |||||||| |||||||||||||||||| |||||||||| ||||||||||||||| Sbjct: 981 ccaagaacttcctcaactccattcttcccaagcttcaccttggaggcaaagaatggcagc 922 Query: 397 tcggtgacagtcgattgcacataggagcattcaacaatgtcaggaactccgttcagaccc 456 || || ||||| ||||||||| | ||||||||||||| ||| || ||||| ||||||||| Sbjct: 921 tctgttacagttgattgcacaaaagagcattcaacaacgtccggcactccattcagaccc 862 Query: 457 ttncagcatgcatctccaaaaactgcaccagcatacgcc 495 || |||| |||| | | ||||| ||||||||||||||| Sbjct: 861 tttaagcaagcatttgcgaaaacagcaccagcatacgcc 823 Score = 58.0 bits (29), Expect = 3e-05 Identities = 61/69 (88%), Gaps = 2/69 (2%) Strand = Plus / Minus Query: 70 ttcctctcgtacaagttatgtttatgtgtggcattacgccgccggaaattttattgtaaa 129 ||||||||||||||||| |||| ||| |||||||| ||||||||| | |||||||||| Sbjct: 1244 ttcctctcgtacaagttttgttc-tgtttggcattaggccgccggat-tcttattgtaaa 1187 Query: 130 gctcaaatc 138 ||||||||| Sbjct: 1186 gctcaaatc 1178
>dbj|AK071699.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023108E15, full insert sequence Length = 1369 Score = 218 bits (110), Expect = 1e-53 Identities = 237/279 (84%), Gaps = 3/279 (1%) Strand = Plus / Minus Query: 217 tctgcaaaatggcctaactaacttgcatttgcgaatgcgacgcccttctcaattgaagat 276 |||||||||||||||||||| |||||||| ||| || |||||||||||||||| Sbjct: 1172 tctgcaaaatggcctaactac---gcatttgcaaatttgatacccttctcaattgaagcc 1116 Query: 277 ttgagctcgcccttgagagcttccaacccttccttctcaaactccgtcagctgacccaac 336 |||||||||||||| ||| |||| |||||||||||||| || | |||||| |||||| Sbjct: 1115 ttgagctcgcccttaagattctccagtccttccttctcaaagtctgacagctggcccaac 1056 Query: 337 ccgagcacttcctcgactccattcttcccaagcctcaccttggaagcaaagaatggcagc 396 || || |||||||| |||||||||||||||||| |||||||||| ||||||||||||||| Sbjct: 1055 ccaagaacttcctcaactccattcttcccaagcttcaccttggaggcaaagaatggcagc 996 Query: 397 tcggtgacagtcgattgcacataggagcattcaacaatgtcaggaactccgttcagaccc 456 || || ||||| ||||||||| | ||||||||||||| ||| || ||||| ||||||||| Sbjct: 995 tctgttacagttgattgcacaaaagagcattcaacaacgtccggcactccattcagaccc 936 Query: 457 ttncagcatgcatctccaaaaactgcaccagcatacgcc 495 || |||| |||| | | ||||| ||||||||||||||| Sbjct: 935 tttaagcaagcatttgcgaaaacagcaccagcatacgcc 897 Score = 58.0 bits (29), Expect = 3e-05 Identities = 61/69 (88%), Gaps = 2/69 (2%) Strand = Plus / Minus Query: 70 ttcctctcgtacaagttatgtttatgtgtggcattacgccgccggaaattttattgtaaa 129 ||||||||||||||||| |||| ||| |||||||| ||||||||| | |||||||||| Sbjct: 1318 ttcctctcgtacaagttttgttc-tgtttggcattaggccgccggat-tcttattgtaaa 1261 Query: 130 gctcaaatc 138 ||||||||| Sbjct: 1260 gctcaaatc 1252
>ref|NM_192352.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1023 Score = 210 bits (106), Expect = 3e-51 Identities = 204/237 (86%) Strand = Plus / Minus Query: 259 cccttctcaattgaagatttgagctcgcccttgagagcttccaacccttccttctcaaac 318 |||||||||||||||| |||||||||||||| ||| |||| |||||||||||||| Sbjct: 1001 cccttctcaattgaagccttgagctcgcccttaagattctccagtccttccttctcaaag 942 Query: 319 tccgtcagctgacccaacccgagcacttcctcgactccattcttcccaagcctcaccttg 378 || | |||||| |||||||| || |||||||| |||||||||||||||||| |||||||| Sbjct: 941 tctgacagctggcccaacccaagaacttcctcaactccattcttcccaagcttcaccttg 882 Query: 379 gaagcaaagaatggcagctcggtgacagtcgattgcacataggagcattcaacaatgtca 438 || ||||||||||||||||| || ||||| ||||||||| | ||||||||||||| ||| Sbjct: 881 gaggcaaagaatggcagctctgttacagttgattgcacaaaagagcattcaacaacgtcc 822 Query: 439 ggaactccgttcagacccttncagcatgcatctccaaaaactgcaccagcatacgcc 495 || ||||| ||||||||||| |||| |||| | | ||||| ||||||||||||||| Sbjct: 821 ggcactccattcagaccctttaagcaagcatttgcgaaaacagcaccagcatacgcc 765
>gb|AF444195.1| Oryza sativa malate dehydrogenase (MDH) mRNA, complete cds; nuclear gene for mitochondrial product Length = 1257 Score = 210 bits (106), Expect = 3e-51 Identities = 236/279 (84%), Gaps = 3/279 (1%) Strand = Plus / Minus Query: 217 tctgcaaaatggcctaactaacttgcatttgcgaatgcgacgcccttctcaattgaagat 276 |||||||||||||||||||| |||||||| ||| || |||||||||||||||| Sbjct: 1056 tctgcaaaatggcctaactac---gcatttgcaaatttgatacccttctcaattgaagcc 1000 Query: 277 ttgagctcgcccttgagagcttccaacccttccttctcaaactccgtcagctgacccaac 336 || ||||||||||| ||| |||| |||||||||||||| || | |||||| |||||| Sbjct: 999 ttaagctcgcccttaagattctccagtccttccttctcaaagtctgacagctggcccaac 940 Query: 337 ccgagcacttcctcgactccattcttcccaagcctcaccttggaagcaaagaatggcagc 396 || || |||||||| |||||||||||||||||| |||||||||| ||||||||||||||| Sbjct: 939 ccaagaacttcctcaactccattcttcccaagcttcaccttggaggcaaagaatggcagc 880 Query: 397 tcggtgacagtcgattgcacataggagcattcaacaatgtcaggaactccgttcagaccc 456 || || ||||| ||||||||| | ||||||||||||| ||| || ||||| ||||||||| Sbjct: 879 tctgttacagttgattgcacaaaagagcattcaacaacgtccggcactccattcagaccc 820 Query: 457 ttncagcatgcatctccaaaaactgcaccagcatacgcc 495 || |||| |||| | | ||||| ||||||||||||||| Sbjct: 819 tttaagcaagcatttgcgaaaacagcaccagcatacgcc 781 Score = 58.0 bits (29), Expect = 3e-05 Identities = 61/69 (88%), Gaps = 2/69 (2%) Strand = Plus / Minus Query: 70 ttcctctcgtacaagttatgtttatgtgtggcattacgccgccggaaattttattgtaaa 129 ||||||||||||||||| |||| ||| |||||||| ||||||||| | |||||||||| Sbjct: 1202 ttcctctcgtacaagttttgttc-tgtttggcattaggccgccggat-tcttattgtaaa 1145 Query: 130 gctcaaatc 138 ||||||||| Sbjct: 1144 gctcaaatc 1136
>gb|BT016218.1| Zea mays clone Contig51 mRNA sequence Length = 1263 Score = 202 bits (102), Expect = 8e-49 Identities = 203/237 (85%) Strand = Plus / Minus Query: 259 cccttctcaattgaagatttgagctcgcccttgagagcttccaacccttccttctcaaac 318 ||||||||||| ||||| |||||||||| |||||| ||||||||||| |||||||| Sbjct: 961 cccttctcaatcgaagacttgagctcgctcttgagcttctccaacccttctttctcaaag 902 Query: 319 tccgtcagctgacccaacccgagcacttcctcgactccattcttcccaagcctcaccttg 378 |||| ||||| ||| || || ||||||||||| |||||||||||||||||||| ||||| Sbjct: 901 tccgacagctcacctaatccaagcacttcctcaactccattcttcccaagccttacctta 842 Query: 379 gaagcaaagaatggcagctcggtgacagtcgattgcacataggagcattcaacaatgtca 438 || ||||||||||| ||||| || ||||| ||||| ||| | ||||| |||||||| || Sbjct: 841 gatgcaaagaatggaagctctgttacagttgattgaacaaaagagcactcaacaatatcc 782 Query: 439 ggaactccgttcagacccttncagcatgcatctccaaaaactgcaccagcatacgcc 495 |||||||| || |||||||| ||||||||||| ||||||| ||||||||||||||| Sbjct: 781 ggaactccattgagacccttcaagcatgcatctgcaaaaacagcaccagcatacgcc 725
>gb|AY108006.1| Zea mays PCO144615 mRNA sequence Length = 701 Score = 202 bits (102), Expect = 8e-49 Identities = 203/237 (85%) Strand = Plus / Minus Query: 259 cccttctcaattgaagatttgagctcgcccttgagagcttccaacccttccttctcaaac 318 ||||||||||| ||||| |||||||||| |||||| ||||||||||| |||||||| Sbjct: 411 cccttctcaatcgaagacttgagctcgctcttgagcttctccaacccttctttctcaaag 352 Query: 319 tccgtcagctgacccaacccgagcacttcctcgactccattcttcccaagcctcaccttg 378 |||| ||||| ||| || || ||||||||||| |||||||||||||||||||| ||||| Sbjct: 351 tccgacagctcacctaatccaagcacttcctcaactccattcttcccaagccttacctta 292 Query: 379 gaagcaaagaatggcagctcggtgacagtcgattgcacataggagcattcaacaatgtca 438 || ||||||||||| ||||| || ||||| ||||| ||| | ||||| |||||||| || Sbjct: 291 gatgcaaagaatggaagctctgttacagttgattgaacaaaagagcactcaacaatatcc 232 Query: 439 ggaactccgttcagacccttncagcatgcatctccaaaaactgcaccagcatacgcc 495 |||||||| || |||||||| ||||||||||| ||||||| ||||||||||||||| Sbjct: 231 ggaactccattgagacccttcaagcatgcatctgcaaaaacagcaccagcatacgcc 175
>gb|BT017838.1| Zea mays clone EL01N0509G03.c mRNA sequence Length = 1337 Score = 194 bits (98), Expect = 2e-46 Identities = 202/237 (85%) Strand = Plus / Minus Query: 259 cccttctcaattgaagatttgagctcgcccttgagagcttccaacccttccttctcaaac 318 ||||||||||| ||||| |||||||||| |||||| ||||||||||| |||||||| Sbjct: 1027 cccttctcaatcgaagacttgagctcgctcttgagcttctccaacccttctttctcaaag 968 Query: 319 tccgtcagctgacccaacccgagcacttcctcgactccattcttcccaagcctcaccttg 378 |||| ||||| ||| || || ||||||||||| |||||||||||||||||||| ||||| Sbjct: 967 tccgacagctcacctaatccaagcacttcctcaactccattcttcccaagccttacctta 908 Query: 379 gaagcaaagaatggcagctcggtgacagtcgattgcacataggagcattcaacaatgtca 438 | ||||||||||| ||||| || ||||| ||||| ||| | ||||| |||||||| || Sbjct: 907 aatgcaaagaatggaagctctgttacagttgattgaacaaaagagcactcaacaatatcc 848 Query: 439 ggaactccgttcagacccttncagcatgcatctccaaaaactgcaccagcatacgcc 495 |||||||| || |||||||| ||||||||||| ||||||| ||||||||||||||| Sbjct: 847 ggaactccattgagacccttcaagcatgcatctgcaaaaacagcaccagcatacgcc 791
>gb|BT016719.1| Zea mays clone Contig552 mRNA sequence Length = 1581 Score = 155 bits (78), Expect = 2e-34 Identities = 185/221 (83%) Strand = Plus / Minus Query: 271 gaagatttgagctcgcccttgagagcttccaacccttccttctcaaactccgtcagctga 330 ||||| ||||||||||||||||| ||||| ||| | |||||| ||||| | |||| | Sbjct: 1155 gaagacttgagctcgcccttgaggttttccagccccttcttctcgaactcgttgagctca 1096 Query: 331 cccaacccgagcacttcctcgactccattcttcccaagcctcaccttggaagcaaagaat 390 |||| || ||||||||||| ||||||||||| || |||| |||||||| ||||||||| Sbjct: 1095 cccagaccaagcacttcctccactccattcttgccgagccgaaccttggaggcaaagaat 1036 Query: 391 ggcagctcggtgacagtcgattgcacataggagcattcaacaatgtcaggaactccgttc 450 |||| ||| || ||||| ||||||||| | ||||| || |||||||| |||||||| ||| Sbjct: 1035 ggcaactctgtcacagttgattgcacaaaagagcactctacaatgtctggaactccattc 976 Query: 451 agacccttncagcatgcatctccaaaaactgcaccagcata 491 |||||||| | ||||||||| ||||||| ||||||||||| Sbjct: 975 agacccttcaaacatgcatctgcaaaaacagcaccagcata 935
>gb|BT009213.1| Triticum aestivum clone wle1n.pk0057.g6:fis, full insert mRNA sequence Length = 1405 Score = 155 bits (78), Expect = 2e-34 Identities = 181/213 (84%), Gaps = 2/213 (0%) Strand = Plus / Minus Query: 280 agctcgcccttgagagct-tccaacccttccttctcaaactccgtcagctgacccaaccc 338 |||||||||||||| ||| |||| ||| |||||||| || ||| ||||| |||| ||| Sbjct: 979 agctcgcccttgag-gctctccagcccctccttctccaaggccgacagctcgcccagccc 921 Query: 339 gagcacttcctcgactccattcttcccaagcctcaccttggaagcaaagaatggcagctc 398 | ||||||||| |||||| |||| || |||||||||||||| ||||||||||||||||| Sbjct: 920 catcacttcctccactccactcttgcccagcctcaccttggaggcaaagaatggcagctc 861 Query: 399 ggtgacagtcgattgcacataggagcattcaacaatgtcaggaactccgttcagaccctt 458 || || || ||||| ||| | ||||| || |||||||||||||| ||||| || ||||| Sbjct: 860 tgttacggttgattggacaaaagagcactctacaatgtcaggaacaccgttgagcccctt 801 Query: 459 ncagcatgcatctccaaaaactgcaccagcata 491 ||||||||||||||||||||||||||||||| Sbjct: 800 caagcatgcatctccaaaaactgcaccagcata 768
>gb|AY103861.1| Zea mays PCO062153 mRNA sequence Length = 1633 Score = 155 bits (78), Expect = 2e-34 Identities = 185/221 (83%) Strand = Plus / Minus Query: 271 gaagatttgagctcgcccttgagagcttccaacccttccttctcaaactccgtcagctga 330 ||||| ||||||||||||||||| ||||| ||| | |||||| ||||| | |||| | Sbjct: 1154 gaagacttgagctcgcccttgaggttttccagccccttcttctcgaactcgttgagctca 1095 Query: 331 cccaacccgagcacttcctcgactccattcttcccaagcctcaccttggaagcaaagaat 390 |||| || ||||||||||| ||||||||||| || |||| |||||||| ||||||||| Sbjct: 1094 cccagaccaagcacttcctccactccattcttgccgagccgaaccttggaggcaaagaat 1035 Query: 391 ggcagctcggtgacagtcgattgcacataggagcattcaacaatgtcaggaactccgttc 450 |||| ||| || ||||| ||||||||| | ||||| || |||||||| |||||||| ||| Sbjct: 1034 ggcaactctgtcacagttgattgcacaaaagagcactctacaatgtctggaactccattc 975 Query: 451 agacccttncagcatgcatctccaaaaactgcaccagcata 491 |||||||| | ||||||||| ||||||| ||||||||||| Sbjct: 974 agacccttcaaacatgcatctgcaaaaacagcaccagcata 934
>ref|XM_475913.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1023 Score = 117 bits (59), Expect = 4e-23 Identities = 190/234 (81%) Strand = Plus / Minus Query: 258 gcccttctcaattgaagatttgagctcgcccttgagagcttccaacccttccttctcaaa 317 |||||||||||| ||||| |||||||| ||||| || |||| || ||||||||||| Sbjct: 999 gcccttctcaatcgaagacttgagctcacccttcaggttctccagaccctccttctcaaa 940 Query: 318 ctccgtcagctgacccaacccgagcacttcctcgactccattcttcccaagcctcacctt 377 ||| | ||||| |||| ||| || |||||||| ||||| ||||| |||||||| ||||| Sbjct: 939 ctcggaaagctggcccagcccaagtacttcctccactccgttcttgccaagccttacctt 880 Query: 378 ggaagcaaagaatggcagctcggtgacagtcgattgcacataggagcattcaacaatgtc 437 || || |||||||||||||| || || || ||||||||| | ||||| || |||| || Sbjct: 879 tgaggcgaagaatggcagctctgttactgttgattgcacaaaagagcactctacaacatc 820 Query: 438 aggaactccgttcagacccttncagcatgcatctccaaaaactgcaccagcata 491 ||||||||| || || ||||| |||| |||||| |||| || ||||||||||| Sbjct: 819 aggaactccattaagccccttcaagcacgcatctgcaaataccgcaccagcata 766
>dbj|AK073698.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033057I02, full insert sequence Length = 1303 Score = 117 bits (59), Expect = 4e-23 Identities = 190/234 (81%) Strand = Plus / Minus Query: 258 gcccttctcaattgaagatttgagctcgcccttgagagcttccaacccttccttctcaaa 317 |||||||||||| ||||| |||||||| ||||| || |||| || ||||||||||| Sbjct: 1056 gcccttctcaatcgaagacttgagctcacccttcaggttctccagaccctccttctcaaa 997 Query: 318 ctccgtcagctgacccaacccgagcacttcctcgactccattcttcccaagcctcacctt 377 ||| | ||||| |||| ||| || |||||||| ||||| ||||| |||||||| ||||| Sbjct: 996 ctcggaaagctggcccagcccaagtacttcctccactccgttcttgccaagccttacctt 937 Query: 378 ggaagcaaagaatggcagctcggtgacagtcgattgcacataggagcattcaacaatgtc 437 || || |||||||||||||| || || || ||||||||| | ||||| || |||| || Sbjct: 936 tgaggcgaagaatggcagctctgttactgttgattgcacaaaagagcactctacaacatc 877 Query: 438 aggaactccgttcagacccttncagcatgcatctccaaaaactgcaccagcata 491 ||||||||| || || ||||| |||| |||||| |||| || ||||||||||| Sbjct: 876 aggaactccattaagccccttcaagcacgcatctgcaaataccgcaccagcata 823
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 115 bits (58), Expect = 1e-22 Identities = 135/160 (84%), Gaps = 3/160 (1%) Strand = Plus / Minus Query: 217 tctgcaaaatggcctaactaacttgcatttgcgaatgcgacgcccttctcaattgaagat 276 |||||||||||||||||||| |||||||| ||| || |||||||||||||||| Sbjct: 26187914 tctgcaaaatggcctaactac---gcatttgcaaatttgatacccttctcaattgaagcc 26187858 Query: 277 ttgagctcgcccttgagagcttccaacccttccttctcaaactccgtcagctgacccaac 336 |||||||||||||| ||| |||| |||||||||||||| || | |||||| |||||| Sbjct: 26187857 ttgagctcgcccttaagattctccagtccttccttctcaaagtctgacagctggcccaac 26187798 Query: 337 ccgagcacttcctcgactccattcttcccaagcctcacct 376 || || |||||||| |||||||||||||||||| |||||| Sbjct: 26187797 ccaagaacttcctcaactccattcttcccaagcttcacct 26187758 Score = 105 bits (53), Expect = 1e-19 Identities = 103/120 (85%) Strand = Plus / Minus Query: 373 accttggaagcaaagaatggcagctcggtgacagtcgattgcacataggagcattcaaca 432 |||||||| ||||||||||||||||| || ||||| ||||||||| | |||||||||||| Sbjct: 26186854 accttggaggcaaagaatggcagctctgttacagttgattgcacaaaagagcattcaaca 26186795 Query: 433 atgtcaggaactccgttcagacccttncagcatgcatctccaaaaactgcaccagcatac 492 | ||| || ||||| ||||||||||| |||| |||| | | ||||| |||||||||||| Sbjct: 26186794 acgtccggcactccattcagaccctttaagcaagcatttgcgaaaacagcaccagcatac 26186735 Score = 58.0 bits (29), Expect = 3e-05 Identities = 61/69 (88%), Gaps = 2/69 (2%) Strand = Plus / Minus Query: 70 ttcctctcgtacaagttatgtttatgtgtggcattacgccgccggaaattttattgtaaa 129 ||||||||||||||||| |||| ||| |||||||| ||||||||| | |||||||||| Sbjct: 26188060 ttcctctcgtacaagttttgttc-tgtttggcattaggccgccggat-tcttattgtaaa 26188003 Query: 130 gctcaaatc 138 ||||||||| Sbjct: 26188002 gctcaaatc 26187994
>dbj|AP003340.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:OJ1316_H05 Length = 105346 Score = 115 bits (58), Expect = 1e-22 Identities = 135/160 (84%), Gaps = 3/160 (1%) Strand = Plus / Minus Query: 217 tctgcaaaatggcctaactaacttgcatttgcgaatgcgacgcccttctcaattgaagat 276 |||||||||||||||||||| |||||||| ||| || |||||||||||||||| Sbjct: 93331 tctgcaaaatggcctaactac---gcatttgcaaatttgatacccttctcaattgaagcc 93275 Query: 277 ttgagctcgcccttgagagcttccaacccttccttctcaaactccgtcagctgacccaac 336 |||||||||||||| ||| |||| |||||||||||||| || | |||||| |||||| Sbjct: 93274 ttgagctcgcccttaagattctccagtccttccttctcaaagtctgacagctggcccaac 93215 Query: 337 ccgagcacttcctcgactccattcttcccaagcctcacct 376 || || |||||||| |||||||||||||||||| |||||| Sbjct: 93214 ccaagaacttcctcaactccattcttcccaagcttcacct 93175 Score = 105 bits (53), Expect = 1e-19 Identities = 103/120 (85%) Strand = Plus / Minus Query: 373 accttggaagcaaagaatggcagctcggtgacagtcgattgcacataggagcattcaaca 432 |||||||| ||||||||||||||||| || ||||| ||||||||| | |||||||||||| Sbjct: 92271 accttggaggcaaagaatggcagctctgttacagttgattgcacaaaagagcattcaaca 92212 Query: 433 atgtcaggaactccgttcagacccttncagcatgcatctccaaaaactgcaccagcatac 492 | ||| || ||||| ||||||||||| |||| |||| | | ||||| |||||||||||| Sbjct: 92211 acgtccggcactccattcagaccctttaagcaagcatttgcgaaaacagcaccagcatac 92152 Score = 58.0 bits (29), Expect = 3e-05 Identities = 61/69 (88%), Gaps = 2/69 (2%) Strand = Plus / Minus Query: 70 ttcctctcgtacaagttatgtttatgtgtggcattacgccgccggaaattttattgtaaa 129 ||||||||||||||||| |||| ||| |||||||| ||||||||| | |||||||||| Sbjct: 93477 ttcctctcgtacaagttttgttc-tgtttggcattaggccgccggat-tcttattgtaaa 93420 Query: 130 gctcaaatc 138 ||||||||| Sbjct: 93419 gctcaaatc 93411
>dbj|AP003053.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0047B08 Length = 57846 Score = 115 bits (58), Expect = 1e-22 Identities = 135/160 (84%), Gaps = 3/160 (1%) Strand = Plus / Minus Query: 217 tctgcaaaatggcctaactaacttgcatttgcgaatgcgacgcccttctcaattgaagat 276 |||||||||||||||||||| |||||||| ||| || |||||||||||||||| Sbjct: 29044 tctgcaaaatggcctaactac---gcatttgcaaatttgatacccttctcaattgaagcc 28988 Query: 277 ttgagctcgcccttgagagcttccaacccttccttctcaaactccgtcagctgacccaac 336 |||||||||||||| ||| |||| |||||||||||||| || | |||||| |||||| Sbjct: 28987 ttgagctcgcccttaagattctccagtccttccttctcaaagtctgacagctggcccaac 28928 Query: 337 ccgagcacttcctcgactccattcttcccaagcctcacct 376 || || |||||||| |||||||||||||||||| |||||| Sbjct: 28927 ccaagaacttcctcaactccattcttcccaagcttcacct 28888 Score = 105 bits (53), Expect = 1e-19 Identities = 103/120 (85%) Strand = Plus / Minus Query: 373 accttggaagcaaagaatggcagctcggtgacagtcgattgcacataggagcattcaaca 432 |||||||| ||||||||||||||||| || ||||| ||||||||| | |||||||||||| Sbjct: 27984 accttggaggcaaagaatggcagctctgttacagttgattgcacaaaagagcattcaaca 27925 Query: 433 atgtcaggaactccgttcagacccttncagcatgcatctccaaaaactgcaccagcatac 492 | ||| || ||||| ||||||||||| |||| |||| | | ||||| |||||||||||| Sbjct: 27924 acgtccggcactccattcagaccctttaagcaagcatttgcgaaaacagcaccagcatac 27865 Score = 58.0 bits (29), Expect = 3e-05 Identities = 61/69 (88%), Gaps = 2/69 (2%) Strand = Plus / Minus Query: 70 ttcctctcgtacaagttatgtttatgtgtggcattacgccgccggaaattttattgtaaa 129 ||||||||||||||||| |||| ||| |||||||| ||||||||| | |||||||||| Sbjct: 29190 ttcctctcgtacaagttttgttc-tgtttggcattaggccgccggat-tcttattgtaaa 29133 Query: 130 gctcaaatc 138 ||||||||| Sbjct: 29132 gctcaaatc 29124
>dbj|AP003792.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:OJ1159_D09 Length = 147770 Score = 99.6 bits (50), Expect = 8e-18 Identities = 124/148 (83%), Gaps = 3/148 (2%) Strand = Plus / Minus Query: 217 tctgcaaaatggcctaactaacttgcatttgcgaatgcgacgcccttctcaattgaagat 276 |||||||||||||||||||| |||||||| ||| || |||||||||||||||| Sbjct: 145 tctgcaaaatggcctaactac---gcatttgcaaatttgatacccttctcaattgaagcc 89 Query: 277 ttgagctcgcccttgagagcttccaacccttccttctcaaactccgtcagctgacccaac 336 |||||||||||||| ||| |||| |||||||||||||| || | |||||| |||||| Sbjct: 88 ttgagctcgcccttaagattctccagtccttccttctcaaagtctgacagctggcccaac 29 Query: 337 ccgagcacttcctcgactccattcttcc 364 || || |||||||| ||||||||||||| Sbjct: 28 ccaagaacttcctcaactccattcttcc 1 Score = 58.0 bits (29), Expect = 3e-05 Identities = 61/69 (88%), Gaps = 2/69 (2%) Strand = Plus / Minus Query: 70 ttcctctcgtacaagttatgtttatgtgtggcattacgccgccggaaattttattgtaaa 129 ||||||||||||||||| |||| ||| |||||||| ||||||||| | |||||||||| Sbjct: 291 ttcctctcgtacaagttttgttc-tgtttggcattaggccgccggat-tcttattgtaaa 234 Query: 130 gctcaaatc 138 ||||||||| Sbjct: 233 gctcaaatc 225
>emb|AJ488945.1|STU488945 Solanum tuberosum mRNA for putative mitochondrial NAD-dependent malate dehydrogenase (mMDH gene), clone cSTA42B8 Length = 1358 Score = 95.6 bits (48), Expect = 1e-16 Identities = 134/163 (82%) Strand = Plus / Minus Query: 329 gacccaacccgagcacttcctcgactccattcttcccaagcctcaccttggaagcaaaga 388 |||||||||| || |||||||| |||||||| |||||||| ||||||||||| ||||||| Sbjct: 976 gacccaacccaaggacttcctccactccatttttcccaagtctcaccttggatgcaaaga 917 Query: 389 atggcagctcggtgacagtcgattgcacataggagcattcaacaatgtcaggaactccgt 448 | || |||||||| ||| | || |||||| | | |||||||||| || |||||||| | Sbjct: 916 agggaagctcggtaacattggactgcacaaaagcacattcaacaacatcgggaactccat 857 Query: 449 tcagacccttncagcatgcatctccaaaaactgcaccagcata 491 ||| |||||| |||| ||||| |||||| || |||||||| Sbjct: 856 tcaaacccttcaagcaagcatcggcaaaaatagccccagcata 814
>emb|AJ488943.1|STU488943 Solanum tuberosum mRNA for putative mitochondrial NAD-dependent malate dehydrogenase (mMDH gene), clone cSTA35K16 Length = 1359 Score = 95.6 bits (48), Expect = 1e-16 Identities = 134/163 (82%) Strand = Plus / Minus Query: 329 gacccaacccgagcacttcctcgactccattcttcccaagcctcaccttggaagcaaaga 388 |||||||||| || |||||||| |||||||| |||||||| ||||||||||| ||||||| Sbjct: 945 gacccaacccaaggacttcctccactccatttttcccaagtctcaccttggatgcaaaga 886 Query: 389 atggcagctcggtgacagtcgattgcacataggagcattcaacaatgtcaggaactccgt 448 | || |||||||| ||| | || |||||| | | |||||||||| || |||||||| | Sbjct: 885 agggaagctcggtaacattggactgcacaaaagcacattcaacaacatcgggaactccat 826 Query: 449 tcagacccttncagcatgcatctccaaaaactgcaccagcata 491 ||| |||||| |||| ||||| |||||| || |||||||| Sbjct: 825 tcaaacccttcaagcaagcatcggcaaaaatagccccagcata 783
>emb|AJ488942.1|STU488942 Solanum tuberosum mRNA for putative mitochondrial NAD-dependent malate dehydrogenase (mMDH gene), clone cSTA35K15 Length = 1359 Score = 95.6 bits (48), Expect = 1e-16 Identities = 134/163 (82%) Strand = Plus / Minus Query: 329 gacccaacccgagcacttcctcgactccattcttcccaagcctcaccttggaagcaaaga 388 |||||||||| || |||||||| |||||||| |||||||| ||||||||||| ||||||| Sbjct: 945 gacccaacccaaggacttcctccactccatttttcccaagtctcaccttggatgcaaaga 886 Query: 389 atggcagctcggtgacagtcgattgcacataggagcattcaacaatgtcaggaactccgt 448 | || |||||||| ||| | || |||||| | | |||||||||| || |||||||| | Sbjct: 885 agggaagctcggtaacattggactgcacaaaagcacattcaacaacatcgggaactccat 826 Query: 449 tcagacccttncagcatgcatctccaaaaactgcaccagcata 491 ||| |||||| |||| ||||| |||||| || |||||||| Sbjct: 825 tcaaacccttcaagcaagcatcggcaaaaatagccccagcata 783
>emb|AJ488941.1|STU488941 Solanum tuberosum mRNA for putative mitochondrial NAD-dependent malate dehydrogenase (mMDH gene), clone cSTB46C3 Length = 1356 Score = 95.6 bits (48), Expect = 1e-16 Identities = 134/163 (82%) Strand = Plus / Minus Query: 329 gacccaacccgagcacttcctcgactccattcttcccaagcctcaccttggaagcaaaga 388 |||||||||| || |||||||| |||||||| |||||||| ||||||||||| ||||||| Sbjct: 994 gacccaaccctaggacttcctccactccatttttcccaagtctcaccttggatgcaaaga 935 Query: 389 atggcagctcggtgacagtcgattgcacataggagcattcaacaatgtcaggaactccgt 448 | || |||||||| ||| | || |||||| | | |||||||||| || |||||||| | Sbjct: 934 agggaagctcggtaacattggactgcacaaaagcacattcaacaacatcgggaactccat 875 Query: 449 tcagacccttncagcatgcatctccaaaaactgcaccagcata 491 ||| |||||| |||| ||||| |||||| || |||||||| Sbjct: 874 tcaaacccttcaagcaagcatcggcaaaaatagccccagcata 832
>emb|X17362.1|CVMD Water melon mMDH mRNA for mitochondrial malate dehydrogenase (EC 1.1.1.37) Length = 1414 Score = 79.8 bits (40), Expect = 8e-12 Identities = 79/92 (85%) Strand = Plus / Minus Query: 355 ccattcttcccaagcctcaccttggaagcaaagaatggcagctcggtgacagtcgattgc 414 |||||||| |||||| ||||||| |||||||||||||| || ||||||||||| |||||| Sbjct: 1010 ccattctttccaagcttcacctttgaagcaaagaatggaagttcggtgacagttgattgc 951 Query: 415 acataggagcattcaacaatgtcaggaactcc 446 ||| | || ||||| |||| || |||||||| Sbjct: 950 acaaatgaacattccacaacatctggaactcc 919 Score = 40.1 bits (20), Expect = 6.7 Identities = 47/56 (83%) Strand = Plus / Minus Query: 259 cccttctcaattgaagatttgagctcgcccttgagagcttccaacccttccttctc 314 ||||||||||| |||| |||||||||| |||||| |||||| ||||| ||||| Sbjct: 1106 cccttctcaatagaagctttgagctcgggcttgagcttttccaaaccttctttctc 1051
>gb|AY725474.1| Lycopersicon esculentum mitochondrial malate dehydrogenase (mMDH) mRNA, complete cds; nuclear gene for mitochondrial product Length = 1041 Score = 79.8 bits (40), Expect = 8e-12 Identities = 132/163 (80%) Strand = Plus / Minus Query: 329 gacccaacccgagcacttcctcgactccattcttcccaagcctcaccttggaagcaaaga 388 |||||||||| || |||||||| |||||||| |||||||| || |||||||| || |||| Sbjct: 946 gacccaaccctaggacttcctccactccatttttcccaagtcttaccttggatgcgaaga 887 Query: 389 atggcagctcggtgacagtcgattgcacataggagcattcaacaatgtcaggaactccgt 448 | || |||||||||||| | || |||||| | | |||||||||| || |||||||| | Sbjct: 886 agggaagctcggtgacattggactgcacaaaagcacattcaacaacatcgggaactccat 827 Query: 449 tcagacccttncagcatgcatctccaaaaactgcaccagcata 491 ||| ||||| |||| ||||| |||||| || |||||||| Sbjct: 826 tcaaccccttcaagcaagcatcggcaaaaatagccccagcata 784
>dbj|AP006654.1| Lotus japonicus genomic DNA, chromosome 3, clone:LjT31E21, TM0340, complete sequence Length = 120480 Score = 67.9 bits (34), Expect = 3e-08 Identities = 73/86 (84%) Strand = Plus / Plus Query: 373 accttggaagcaaagaatggcagctcggtgacagtcgattgcacataggagcattcaaca 432 ||||||||||||||||| || || || |||||| | ||||||||||| ||||| |||||| Sbjct: 31842 accttggaagcaaagaaaggaagatcagtgacactggattgcacatatgagcactcaaca 31901 Query: 433 atgtcaggaactccgttcagaccctt 458 | ||| || |||||||| || ||||| Sbjct: 31902 acgtctgggactccgttaaggccctt 31927 Score = 60.0 bits (30), Expect = 7e-06 Identities = 72/86 (83%) Strand = Plus / Plus Query: 373 accttggaagcaaagaatggcagctcggtgacagtcgattgcacataggagcattcaaca 432 |||| |||||||||||| || || || |||||| | ||||||||||| ||||| |||||| Sbjct: 11866 acctaggaagcaaagaaaggaagatcagtgacactggattgcacatatgagcactcaaca 11925 Query: 433 atgtcaggaactccgttcagaccctt 458 | ||| || |||||||| || ||||| Sbjct: 11926 acgtctgggactccgttaaggccctt 11951
>gb|AC104284.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1735_C10, complete sequence Length = 187034 Score = 65.9 bits (33), Expect = 1e-07 Identities = 98/120 (81%) Strand = Plus / Plus Query: 372 caccttggaagcaaagaatggcagctcggtgacagtcgattgcacataggagcattcaac 431 |||||| || || |||||||||||||| || || || ||||||||| | ||||| || || Sbjct: 182464 cacctttgaggcgaagaatggcagctctgttactgttgattgcacaaaagagcactctac 182523 Query: 432 aatgtcaggaactccgttcagacccttncagcatgcatctccaaaaactgcaccagcata 491 || ||||||||||| || || ||||| |||| |||||| |||| || ||||||||||| Sbjct: 182524 aacatcaggaactccattaagccccttcaagcacgcatctgcaaataccgcaccagcata 182583 Score = 61.9 bits (31), Expect = 2e-06 Identities = 97/119 (81%) Strand = Plus / Plus Query: 258 gcccttctcaattgaagatttgagctcgcccttgagagcttccaacccttccttctcaaa 317 |||||||||||| ||||| |||||||| ||||| || |||| || ||||||||||| Sbjct: 181863 gcccttctcaatcgaagacttgagctcacccttcaggttctccagaccctccttctcaaa 181922 Query: 318 ctccgtcagctgacccaacccgagcacttcctcgactccattcttcccaagcctcacct 376 ||| | ||||| |||| ||| || |||||||| ||||| ||||| |||||||| |||| Sbjct: 181923 ctcggaaagctggcccagcccaagtacttcctccactccgttcttgccaagccttacct 181981
>gb|AC098832.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1268_B08, complete sequence Length = 119500 Score = 65.9 bits (33), Expect = 1e-07 Identities = 98/120 (81%) Strand = Plus / Plus Query: 372 caccttggaagcaaagaatggcagctcggtgacagtcgattgcacataggagcattcaac 431 |||||| || || |||||||||||||| || || || ||||||||| | ||||| || || Sbjct: 33146 cacctttgaggcgaagaatggcagctctgttactgttgattgcacaaaagagcactctac 33205 Query: 432 aatgtcaggaactccgttcagacccttncagcatgcatctccaaaaactgcaccagcata 491 || ||||||||||| || || ||||| |||| |||||| |||| || ||||||||||| Sbjct: 33206 aacatcaggaactccattaagccccttcaagcacgcatctgcaaataccgcaccagcata 33265 Score = 61.9 bits (31), Expect = 2e-06 Identities = 97/119 (81%) Strand = Plus / Plus Query: 258 gcccttctcaattgaagatttgagctcgcccttgagagcttccaacccttccttctcaaa 317 |||||||||||| ||||| |||||||| ||||| || |||| || ||||||||||| Sbjct: 32545 gcccttctcaatcgaagacttgagctcacccttcaggttctccagaccctccttctcaaa 32604 Query: 318 ctccgtcagctgacccaacccgagcacttcctcgactccattcttcccaagcctcacct 376 ||| | ||||| |||| ||| || |||||||| ||||| ||||| |||||||| |||| Sbjct: 32605 ctcggaaagctggcccagcccaagtacttcctccactccgttcttgccaagccttacct 32663
>gb|AF020271.1|AF020271 Medicago sativa mitochondrial malate dehydrogenase precursor (mmdh) mRNA, nuclear gene encoding mitochondrial protein, complete cds Length = 1467 Score = 65.9 bits (33), Expect = 1e-07 Identities = 42/45 (93%) Strand = Plus / Minus Query: 345 ttcctcgactccattcttcccaagcctcaccttggaagcaaagaa 389 |||||| || ||||||||||||| ||||||||||||||||||||| Sbjct: 1005 ttcctctacaccattcttcccaatcctcaccttggaagcaaagaa 961
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 65.9 bits (33), Expect = 1e-07 Identities = 98/120 (81%) Strand = Plus / Plus Query: 372 caccttggaagcaaagaatggcagctcggtgacagtcgattgcacataggagcattcaac 431 |||||| || || |||||||||||||| || || || ||||||||| | ||||| || || Sbjct: 28398222 cacctttgaggcgaagaatggcagctctgttactgttgattgcacaaaagagcactctac 28398281 Query: 432 aatgtcaggaactccgttcagacccttncagcatgcatctccaaaaactgcaccagcata 491 || ||||||||||| || || ||||| |||| |||||| |||| || ||||||||||| Sbjct: 28398282 aacatcaggaactccattaagccccttcaagcacgcatctgcaaataccgcaccagcata 28398341 Score = 61.9 bits (31), Expect = 2e-06 Identities = 97/119 (81%) Strand = Plus / Plus Query: 258 gcccttctcaattgaagatttgagctcgcccttgagagcttccaacccttccttctcaaa 317 |||||||||||| ||||| |||||||| ||||| || |||| || ||||||||||| Sbjct: 28397621 gcccttctcaatcgaagacttgagctcacccttcaggttctccagaccctccttctcaaa 28397680 Query: 318 ctccgtcagctgacccaacccgagcacttcctcgactccattcttcccaagcctcacct 376 ||| | ||||| |||| ||| || |||||||| ||||| ||||| |||||||| |||| Sbjct: 28397681 ctcggaaagctggcccagcccaagtacttcctccactccgttcttgccaagccttacct 28397739
>ref|NM_104202.2| Arabidopsis thaliana malate dehydrogenase AT1G53240 mRNA, complete cds Length = 1512 Score = 61.9 bits (31), Expect = 2e-06 Identities = 70/83 (84%) Strand = Plus / Minus Query: 346 tcctcgactccattcttcccaagcctcaccttggaagcaaagaatggcagctcggtgaca 405 ||||| || ||||||||||| | ||||||||| || |||||||| || |||||||||| Sbjct: 1052 tcctccacaccattcttccccaacctcaccttcgaggcaaagaaaggaagctcggtgatt 993 Query: 406 gtcgattgcacataggagcattc 428 || |||||||| || |||||||| Sbjct: 992 gtagattgcacgtatgagcattc 970
>gb|AY630925.1| Rosa roxburghii NAD-dependent malate dehydrogenase-like mRNA, partial sequence; mitochondrial Length = 1024 Score = 61.9 bits (31), Expect = 2e-06 Identities = 64/75 (85%) Strand = Plus / Minus Query: 343 acttcctcgactccattcttcccaagcctcaccttggaagcaaagaatggcagctcggtg 402 |||||||| || ||||||||||| || |||||||||||||||||||| || || || ||| Sbjct: 601 acttcctccacaccattcttccccagtctcaccttggaagcaaagaaaggaagttcagtg 542 Query: 403 acagtcgattgcaca 417 | ||||||||||| Sbjct: 541 atgctcgattgcaca 527
>gb|AF339684.1| Arabidopsis thaliana putative mitochondrial NAD-dependent malate dehydrogenase (At1g53240) mRNA, complete cds Length = 1076 Score = 61.9 bits (31), Expect = 2e-06 Identities = 70/83 (84%) Strand = Plus / Minus Query: 346 tcctcgactccattcttcccaagcctcaccttggaagcaaagaatggcagctcggtgaca 405 ||||| || ||||||||||| | ||||||||| || |||||||| || |||||||||| Sbjct: 917 tcctccacaccattcttccccaacctcaccttcgaggcaaagaaaggaagctcggtgatt 858 Query: 406 gtcgattgcacataggagcattc 428 || |||||||| || |||||||| Sbjct: 857 gtagattgcacgtatgagcattc 835
>emb|AJ131205.1|ATH131205 Arabidopsis thaliana mRNA for mitochondrial NAD-dependent malate dehydrogenase Length = 1265 Score = 61.9 bits (31), Expect = 2e-06 Identities = 70/83 (84%) Strand = Plus / Minus Query: 346 tcctcgactccattcttcccaagcctcaccttggaagcaaagaatggcagctcggtgaca 405 ||||| || ||||||||||| | ||||||||| || |||||||| || |||||||||| Sbjct: 1008 tcctccacaccattcttccccaacctcaccttcgaggcaaagaaaggaagctcggtgatt 949 Query: 406 gtcgattgcacataggagcattc 428 || |||||||| || |||||||| Sbjct: 948 gtagattgcacgtatgagcattc 926
>gb|AY128783.1| Arabidopsis thaliana similar to mitochondrial NAD-dependent malate dehydrogenase (At1g53240) mRNA, complete cds Length = 1273 Score = 61.9 bits (31), Expect = 2e-06 Identities = 70/83 (84%) Strand = Plus / Minus Query: 346 tcctcgactccattcttcccaagcctcaccttggaagcaaagaatggcagctcggtgaca 405 ||||| || ||||||||||| | ||||||||| || |||||||| || |||||||||| Sbjct: 917 tcctccacaccattcttccccaacctcaccttcgaggcaaagaaaggaagctcggtgatt 858 Query: 406 gtcgattgcacataggagcattc 428 || |||||||| || |||||||| Sbjct: 857 gtagattgcacgtatgagcattc 835
>gb|AF324670.2| Arabidopsis thaliana At1g53240 (At1g53240/F12M16_14) mRNA, complete cds Length = 1336 Score = 61.9 bits (31), Expect = 2e-06 Identities = 70/83 (84%) Strand = Plus / Minus Query: 346 tcctcgactccattcttcccaagcctcaccttggaagcaaagaatggcagctcggtgaca 405 ||||| || ||||||||||| | ||||||||| || |||||||| || |||||||||| Sbjct: 975 tcctccacaccattcttccccaacctcaccttcgaggcaaagaaaggaagctcggtgatt 916 Query: 406 gtcgattgcacataggagcattc 428 || |||||||| || |||||||| Sbjct: 915 gtagattgcacgtatgagcattc 893
>gb|AY062580.1| Arabidopsis thaliana similar to mitochondrial NAD-dependent malate dehydrogenase (At1g53240; F12M16.14) mRNA, complete cds Length = 1440 Score = 61.9 bits (31), Expect = 2e-06 Identities = 70/83 (84%) Strand = Plus / Minus Query: 346 tcctcgactccattcttcccaagcctcaccttggaagcaaagaatggcagctcggtgaca 405 ||||| || ||||||||||| | ||||||||| || |||||||| || |||||||||| Sbjct: 1027 tcctccacaccattcttccccaacctcaccttcgaggcaaagaaaggaagctcggtgatt 968 Query: 406 gtcgattgcacataggagcattc 428 || |||||||| || |||||||| Sbjct: 967 gtagattgcacgtatgagcattc 945
>emb|BX818530.1|CNS0ACMK Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL84ZB02 of Silique of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1304 Score = 61.9 bits (31), Expect = 2e-06 Identities = 70/83 (84%) Strand = Plus / Minus Query: 346 tcctcgactccattcttcccaagcctcaccttggaagcaaagaatggcagctcggtgaca 405 ||||| || ||||||||||| | ||||||||| || |||||||| || |||||||||| Sbjct: 967 tcctccacaccattcttccccaacctcaccttcgaggcaaagaaaggaagctcggtgatt 908 Query: 406 gtcgattgcacataggagcattc 428 || |||||||| || |||||||| Sbjct: 907 gtagattgcacgtatgagcattc 885
>emb|BX815069.1|CNS0AAOE Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS30ZA03 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1457 Score = 61.9 bits (31), Expect = 2e-06 Identities = 70/83 (84%) Strand = Plus / Minus Query: 346 tcctcgactccattcttcccaagcctcaccttggaagcaaagaatggcagctcggtgaca 405 ||||| || ||||||||||| | ||||||||| || |||||||| || |||||||||| Sbjct: 1041 tcctccacaccattcttccccaacctcaccttcgaggcaaagaaaggaagctcggtgatt 982 Query: 406 gtcgattgcacataggagcattc 428 || |||||||| || |||||||| Sbjct: 981 gtagattgcacgtatgagcattc 959
>gb|AY087304.1| Arabidopsis thaliana clone 33917 mRNA, complete sequence Length = 1239 Score = 61.9 bits (31), Expect = 2e-06 Identities = 70/83 (84%) Strand = Plus / Minus Query: 346 tcctcgactccattcttcccaagcctcaccttggaagcaaagaatggcagctcggtgaca 405 ||||| || ||||||||||| | ||||||||| || |||||||| || |||||||||| Sbjct: 1052 tcctccacaccattcttccccaacctcaccttcgaggcaaagaaaggaagctcggtgatt 993 Query: 406 gtcgattgcacataggagcattc 428 || |||||||| || |||||||| Sbjct: 992 gtagattgcacgtatgagcattc 970
>gb|AF068687.1|AF068687 Glycine max malate dehydrogenase (Mdh-2) gene, nuclear gene encoding mitochondrial protein, partial cds Length = 6035 Score = 60.0 bits (30), Expect = 7e-06 Identities = 33/34 (97%) Strand = Plus / Minus Query: 343 acttcctcgactccattcttcccaagcctcacct 376 |||||||| ||||||||||||||||||||||||| Sbjct: 3370 acttcctccactccattcttcccaagcctcacct 3337
>gb|AF068689.1|AF068689 Glycine max clone a2 malate dehydrogenase (Mdh-1) mRNA, nuclear gene encoding mitochondrial protein, partial cds Length = 245 Score = 56.0 bits (28), Expect = 1e-04 Identities = 28/28 (100%) Strand = Plus / Minus Query: 362 tcccaagcctcaccttggaagcaaagaa 389 |||||||||||||||||||||||||||| Sbjct: 73 tcccaagcctcaccttggaagcaaagaa 46
>emb|BX814119.1|CNS0ADTT Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB58ZB04 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1301 Score = 54.0 bits (27), Expect = 4e-04 Identities = 60/71 (84%) Strand = Plus / Minus Query: 346 tcctcgactccattcttcccaagcctcaccttggaagcaaagaatggcagctcggtgaca 405 ||||| || ||||||||||| | ||||||||| || |||||||| || |||||||||| Sbjct: 1034 tcctccacaccattcttccccaacctcaccttcgaggcaaagaaaggaagctcggtgatt 975 Query: 406 gtcgattgcac 416 || |||||||| Sbjct: 974 gtagattgcac 964
>emb|BX815223.1|CNS0ACW4 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS43ZE06 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1301 Score = 54.0 bits (27), Expect = 4e-04 Identities = 60/71 (84%) Strand = Plus / Minus Query: 346 tcctcgactccattcttcccaagcctcaccttggaagcaaagaatggcagctcggtgaca 405 ||||| || ||||||||||| | ||||||||| || |||||||| || |||||||||| Sbjct: 961 tcctccacaccattcttccccaacctcaccttcgaggcaaagaaaggaagctcggtgatt 902 Query: 406 gtcgattgcac 416 || |||||||| Sbjct: 901 gtagattgcac 891
>emb|AL929044.17| Zebrafish DNA sequence from clone CH211-245D9 in linkage group 1, complete sequence Length = 151090 Score = 46.1 bits (23), Expect = 0.11 Identities = 23/23 (100%) Strand = Plus / Minus Query: 118 ttttattgtaaagctcaaatctt 140 ||||||||||||||||||||||| Sbjct: 20416 ttttattgtaaagctcaaatctt 20394
>emb|CR762472.6| Zebrafish DNA sequence from clone DKEY-75G19 in linkage group 1, complete sequence Length = 176472 Score = 46.1 bits (23), Expect = 0.11 Identities = 23/23 (100%) Strand = Plus / Plus Query: 118 ttttattgtaaagctcaaatctt 140 ||||||||||||||||||||||| Sbjct: 15291 ttttattgtaaagctcaaatctt 15313
>gb|AC131664.3| Mus musculus BAC clone RP23-274J16 from chromosome 5, complete sequence Length = 189996 Score = 46.1 bits (23), Expect = 0.11 Identities = 23/23 (100%) Strand = Plus / Minus Query: 224 aatggcctaactaacttgcattt 246 ||||||||||||||||||||||| Sbjct: 89911 aatggcctaactaacttgcattt 89889
>gb|AC069309.4| Mus musculus strain C57BL6/J chromosome 6 clone RP23-154D15, complete sequence Length = 174754 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 187 acccctcaacaagacctgggt 207 ||||||||||||||||||||| Sbjct: 152575 acccctcaacaagacctgggt 152595
>gb|AC138228.10| Mus musculus chromosome 17, clone RP23-304G12, complete sequence Length = 225739 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 157 ggcagaaaaagaactggacca 177 ||||||||||||||||||||| Sbjct: 78068 ggcagaaaaagaactggacca 78088
>gb|DQ083216.1| Oryza sativa (indica cultivar-group) clone 8S2F40 mRNA sequence Length = 269 Score = 42.1 bits (21), Expect = 1.7 Identities = 30/33 (90%) Strand = Plus / Minus Query: 258 gcccttctcaattgaagatttgagctcgccctt 290 |||||||||||| ||||| |||||||| ||||| Sbjct: 85 gcccttctcaatcgaagacttgagctcaccctt 53
>gb|AC151356.2| Xenopus tropicalis clone ISB-60G16, complete sequence Length = 63778 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 472 ccaaaaactgcaccagcatac 492 ||||||||||||||||||||| Sbjct: 21055 ccaaaaactgcaccagcatac 21035
>gb|AC122736.13| Mus musculus chromosome 7, clone RP23-272F2, complete sequence Length = 226595 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Minus Query: 292 agagcttccaacccttccttctcaa 316 |||||||||| |||||||||||||| Sbjct: 89010 agagcttccaccccttccttctcaa 88986
>ref|NM_112364.2| Arabidopsis thaliana malate dehydrogenase/ oxidoreductase AT3G15020 mRNA, complete cds Length = 1396 Score = 40.1 bits (20), Expect = 6.7 Identities = 53/64 (82%) Strand = Plus / Minus Query: 340 agcacttcctcgactccattcttcccaagcctcaccttggaagcaaagaatggcagctcg 399 ||||||||||| ||||| ||||| || || || ||||| || || ||||| || |||||| Sbjct: 986 agcacttcctccactccgttctttcccagtcttacctttgaggcgaagaaaggaagctcg 927 Query: 400 gtga 403 |||| Sbjct: 926 gtga 923
>gb|AF180335.1| Glycine max malate dehydrogenase (Mdh1) gene, complete cds; nuclear gene for mitochondrial product Length = 27588 Score = 40.1 bits (20), Expect = 6.7 Identities = 38/44 (86%) Strand = Plus / Minus Query: 373 accttggaagcaaagaatggcagctcggtgacagtcgattgcac 416 ||||||||||||||||| || || || || ||||| |||||||| Sbjct: 10181 accttggaagcaaagaagggaagttcagtaacagtggattgcac 10138
>gb|AE017347.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 7, complete sequence Length = 1347793 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 289 ttgagagcttccaacccttccttc 312 ||||||||||| |||||||||||| Sbjct: 602290 ttgagagcttcgaacccttccttc 602313
>ref|XM_415085.1| PREDICTED: Gallus gallus similar to Golgi autoantigen, golgin subfamily a, 3; male enhanced antigen-2; SY2/SY10 protein; Golgi complex-associated protein of 170 kD; Golgi peripheral membrane protein; golgin-165; Golgi membrane associated protein; golgin-160 ... (LOC416791), mRNA Length = 5973 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 372 caccttggaagcaaagaatg 391 |||||||||||||||||||| Sbjct: 1806 caccttggaagcaaagaatg 1825
>gb|DQ125487.1| Toxoplasma gondii structural maintenance of chromosome 4 (SMC4) gene, complete cds Length = 15840 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 158 gcagaaaaagaactggacca 177 |||||||||||||||||||| Sbjct: 6787 gcagaaaaagaactggacca 6806
>gb|AC118545.20| Mus musculus strain C57BL/6J clone rp23-324o14 map 17, complete sequence Length = 236365 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 30 aattgttcattgccagttca 49 |||||||||||||||||||| Sbjct: 191492 aattgttcattgccagttca 191473
>emb|AL441986.19| Human DNA sequence from clone RP11-349O10 on chromosome 13 Contains two novel genes and a peroxiredoxin 3 (PRDX3) pseudogene, complete sequence Length = 188208 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 49 aaagcttgacacaaaactag 68 |||||||||||||||||||| Sbjct: 67105 aaagcttgacacaaaactag 67124
>emb|AL391478.14| Human DNA sequence from clone RP11-552I13 on chromosome 10 Contains part of the NRG3 gene for neuregulin 3, complete sequence Length = 180625 Score = 40.1 bits (20), Expect = 6.7 Identities = 29/32 (90%) Strand = Plus / Plus Query: 290 tgagagcttccaacccttccttctcaaactcc 321 ||||||||||||||||| ||| ||||| |||| Sbjct: 166200 tgagagcttccaaccctgcctcctcaagctcc 166231
>emb|AL356319.18| Human DNA sequence from clone RP11-810G21 on chromosome 13 Contains a CpG island, complete sequence Length = 137260 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 87 atgtttatgtgtggcattac 106 |||||||||||||||||||| Sbjct: 2201 atgtttatgtgtggcattac 2220
>gb|AC084324.8| Mus musculus Strain C57BL6/J chromosome 2 BAC, RP23-96L7 Complete Sequence, complete sequence Length = 205893 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 379 gaagcaaagaatggcagctc 398 |||||||||||||||||||| Sbjct: 6255 gaagcaaagaatggcagctc 6274
>gb|AY093788.1| Arabidopsis thaliana AT3g15020/K15M2_16 mRNA, complete cds Length = 1026 Score = 40.1 bits (20), Expect = 6.7 Identities = 53/64 (82%) Strand = Plus / Minus Query: 340 agcacttcctcgactccattcttcccaagcctcaccttggaagcaaagaatggcagctcg 399 ||||||||||| ||||| ||||| || || || ||||| || || ||||| || |||||| Sbjct: 923 agcacttcctccactccgttctttcccagtcttacctttgaggcgaagaaaggaagctcg 864 Query: 400 gtga 403 |||| Sbjct: 863 gtga 860
>ref|XM_572187.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 7 Length = 6825 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 289 ttgagagcttccaacccttccttc 312 ||||||||||| |||||||||||| Sbjct: 2855 ttgagagcttcgaacccttccttc 2832
>dbj|AK020312.1| Mus musculus adult male epididymis cDNA, RIKEN full-length enriched library, clone:9230104J12 product:unclassifiable, full insert sequence Length = 744 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 125 gtaaagctcaaatcttccat 144 |||||||||||||||||||| Sbjct: 709 gtaaagctcaaatcttccat 690
>gb|AC134913.6| Mus musculus BAC clone RP23-195M6 from chromosome 13, complete sequence Length = 223130 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 370 ctcaccttggaagcaaagaa 389 |||||||||||||||||||| Sbjct: 160078 ctcaccttggaagcaaagaa 160059
>gb|AY045592.1| Arabidopsis thaliana AT3g15020/K15M2_16 mRNA, complete cds Length = 1396 Score = 40.1 bits (20), Expect = 6.7 Identities = 53/64 (82%) Strand = Plus / Minus Query: 340 agcacttcctcgactccattcttcccaagcctcaccttggaagcaaagaatggcagctcg 399 ||||||||||| ||||| ||||| || || || ||||| || || ||||| || |||||| Sbjct: 986 agcacttcctccactccgttctttcccagtcttacctttgaggcgaagaaaggaagctcg 927 Query: 400 gtga 403 |||| Sbjct: 926 gtga 923
>emb|BX824867.1|CNS0A5NF Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH79ZA08 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1302 Score = 40.1 bits (20), Expect = 6.7 Identities = 53/64 (82%) Strand = Plus / Minus Query: 340 agcacttcctcgactccattcttcccaagcctcaccttggaagcaaagaatggcagctcg 399 ||||||||||| ||||| ||||| || || || ||||| || || ||||| || |||||| Sbjct: 964 agcacttcctccactccgttctttcccagtcttacctttgaggcgaagaaaggaagctcg 905 Query: 400 gtga 403 |||| Sbjct: 904 gtga 901
>emb|BX824034.1|CNS0A5H3 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH17ZB09 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1232 Score = 40.1 bits (20), Expect = 6.7 Identities = 53/64 (82%) Strand = Plus / Minus Query: 340 agcacttcctcgactccattcttcccaagcctcaccttggaagcaaagaatggcagctcg 399 ||||||||||| ||||| ||||| || || || ||||| || || ||||| || |||||| Sbjct: 971 agcacttcctccactccgttctttcccagtcttacctttgaggcgaagaaaggaagctcg 912 Query: 400 gtga 403 |||| Sbjct: 911 gtga 908
>gb|AY089112.1| Arabidopsis thaliana clone 34499 mRNA, complete sequence Length = 1302 Score = 40.1 bits (20), Expect = 6.7 Identities = 53/64 (82%) Strand = Plus / Minus Query: 340 agcacttcctcgactccattcttcccaagcctcaccttggaagcaaagaatggcagctcg 399 ||||||||||| ||||| ||||| || || || ||||| || || ||||| || |||||| Sbjct: 984 agcacttcctccactccgttctttcccagtcttacctttgaggcgaagaaaggaagctcg 925 Query: 400 gtga 403 |||| Sbjct: 924 gtga 921
>gb|AF275347.1|AF275347 Cladosporium fulvum aldehyde dehydrogenase (aldh) mRNA, complete cds Length = 1659 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 135 aatcttccatgcccacatga 154 |||||||||||||||||||| Sbjct: 585 aatcttccatgcccacatga 566
>gb|AC091484.8| Mus musculus strain C57BL/6J chromosome 17 clone rp23-386a1, complete sequence Length = 205343 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 30 aattgttcattgccagttca 49 |||||||||||||||||||| Sbjct: 85503 aattgttcattgccagttca 85484
>emb|AL928720.6| Mouse DNA sequence from clone RP23-83A3 on chromosome 2, complete sequence Length = 89813 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 379 gaagcaaagaatggcagctc 398 |||||||||||||||||||| Sbjct: 17130 gaagcaaagaatggcagctc 17111
>dbj|D00637.1|KYVCGA Kennedya yellow mosaic virus genomic RNA, complete sequence Length = 6362 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 298 tccaacccttccttctcaaa 317 |||||||||||||||||||| Sbjct: 222 tccaacccttccttctcaaa 241 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,739,212 Number of Sequences: 3902068 Number of extensions: 4739212 Number of successful extensions: 95103 Number of sequences better than 10.0: 71 Number of HSP's better than 10.0 without gapping: 71 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 94902 Number of HSP's gapped (non-prelim): 190 length of query: 495 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 473 effective length of database: 17,147,199,772 effective search space: 8110625492156 effective search space used: 8110625492156 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)