ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart16d08 |
|---|---|
| Clone Library Name | barley_pub |
>NUD14_ARATH (Q9SZ63) Nudix hydrolase 14, mitochondrial precursor (EC 3.6.1.-)| (AtNUDT14) Length = 309 Score = 154 bits (389), Expect = 1e-37 Identities = 71/103 (68%), Positives = 86/103 (83%) Frame = -2 Query: 475 EETGIKLNLEDMVDLTALLDPATGCKMLPSPGGCDEEIGLFLYRGHVDDETIRALQGKET 296 EE GIKL EDMVDLTA LDP+TG ++ PSPGGCDEE+ +FLYRG V+ ETIR LQGKET Sbjct: 197 EEIGIKLKKEDMVDLTAFLDPSTGYRIFPSPGGCDEEMSVFLYRGQVEKETIRQLQGKET 256 Query: 295 GLRDHGELIKLRVVPYDQLWRSTADLKALSAIALYEMAKKEGV 167 GLR+HGE IK+R++PY +LWR TAD K L +I LYEMA++EG+ Sbjct: 257 GLREHGEFIKVRLIPYRELWRKTADAKVLMSIGLYEMAQREGL 299
>PSBC_PEA (P06004) Photosystem II 44 kDa reaction center protein (P6 protein)| (CP43) Length = 473 Score = 32.3 bits (72), Expect = 0.65 Identities = 22/77 (28%), Positives = 36/77 (46%), Gaps = 1/77 (1%) Frame = +2 Query: 59 IGYVMIVAAFFYFAGDNELWPVGCLQVRR*ATRWRQYAFLLGHLIQS-YGRERLQVCCRA 235 IG ++V FYF G + W G VR+ + L G+L++S +G E V Sbjct: 170 IGSFLLVFKAFYFGGIYDTWAPGGGDVRKITNFTLSPSILFGYLLKSPFGGEGWIVSVDD 229 Query: 236 PELVVGDHTQLDQLAMV 286 E ++G H L + ++ Sbjct: 230 LEDIIGGHVWLGSICIL 246
>5E5_RAT (Q63003) 5E5 antigen| Length = 825 Score = 31.2 bits (69), Expect = 1.4 Identities = 16/39 (41%), Positives = 17/39 (43%), Gaps = 2/39 (5%) Frame = -1 Query: 362 WPVPLQGACGRRDHQSSPREGNGPPGP--WRADQAACGP 252 WP P + G RD SPRE G P W A GP Sbjct: 388 WPSPQEREPGPRDRVESPREWGGTESPRGWEAGPREWGP 426
>HEMO_PIG (P50828) Hemopexin precursor (Hyaluronidase) (EC 3.2.1.35)| Length = 459 Score = 29.6 bits (65), Expect = 4.2 Identities = 14/37 (37%), Positives = 18/37 (48%) Frame = -1 Query: 443 HG*SYRFAGPCYWVQNASITGWL*RRDWPVPLQGACG 333 HG +Y F G YW + S GW WP+ Q + G Sbjct: 264 HGATYAFRGTHYWRLDTSRDGW---HSWPIDHQWSHG 297
>UDPE_NPVLD (P41713) Ecdysteroid UDP-glucosyltransferase precursor (EC 2.4.1.-)| Length = 506 Score = 29.6 bits (65), Expect = 4.2 Identities = 21/52 (40%), Positives = 26/52 (50%) Frame = -1 Query: 173 RRTAAI*WLIVEPVNTQRAIVRYLQRSRKRPRQS*HNQYHQCANFTFKQVWW 18 R TAA VE V + RA L+R R+ R HQCA+ T K VW+ Sbjct: 411 RLTAADLARAVEQVTSDRAYRENLERLRRLLR-------HQCASPTHKAVWY 455
>HEMO_HUMAN (P02790) Hemopexin precursor (Beta-1B-glycoprotein)| Length = 462 Score = 29.6 bits (65), Expect = 4.2 Identities = 13/33 (39%), Positives = 17/33 (51%) Frame = -1 Query: 443 HG*SYRFAGPCYWVQNASITGWL*RRDWPVPLQ 345 HG +Y F+G YW + S GW WP+ Q Sbjct: 271 HGATYAFSGTHYWRLDTSRDGW---HSWPIAHQ 300
>PSBC_TOBAC (P06413) Photosystem II 44 kDa reaction center protein (P6 protein)| (CP43) Length = 473 Score = 28.9 bits (63), Expect = 7.2 Identities = 19/77 (24%), Positives = 35/77 (45%), Gaps = 1/77 (1%) Frame = +2 Query: 59 IGYVMIVAAFFYFAGDNELWPVGCLQVRR*ATRWRQYAFLLGHLIQS-YGRERLQVCCRA 235 +G ++V YF G + W G VR+ + + G+L++S +G E V Sbjct: 170 LGAFLLVFKALYFGGVYDTWAPGGGDVRKITNLTLSPSIIFGYLLKSPFGGEGWIVSVDD 229 Query: 236 PELVVGDHTQLDQLAMV 286 E ++G H L + ++ Sbjct: 230 LEDIIGGHVWLGSICIL 246
>PSBC_LOTJA (Q9BBT1) Photosystem II 44 kDa reaction center protein (P6 protein)| (CP43) Length = 473 Score = 28.9 bits (63), Expect = 7.2 Identities = 20/77 (25%), Positives = 35/77 (45%), Gaps = 1/77 (1%) Frame = +2 Query: 59 IGYVMIVAAFFYFAGDNELWPVGCLQVRR*ATRWRQYAFLLGHLIQS-YGRERLQVCCRA 235 IG ++V YF G + W G VR+ + + G+L++S +G E V Sbjct: 170 IGAFLLVFKASYFGGIYDTWAPGGGDVRKITNLTLSPSIIFGYLLKSPFGGEGWIVSVDD 229 Query: 236 PELVVGDHTQLDQLAMV 286 E ++G H L + ++ Sbjct: 230 LEDIIGGHVWLGSICIL 246
>PLEC1_CRIGR (Q9JI55) Plectin-1 (PLTN) (PCN) (300-kDa intermediate| filament-associated protein) (IFAP300) (Fragment) Length = 4473 Score = 28.9 bits (63), Expect = 7.2 Identities = 23/79 (29%), Positives = 39/79 (49%), Gaps = 10/79 (12%) Frame = -2 Query: 418 DPATGCKMLPSPGGCDEEIGLFLYRGHVDDETIRALQGKE---TGLRDHG-------ELI 269 DP TG ++LP G E+ + + + ++ET RA + + G HG E++ Sbjct: 3459 DPETGLRLLPLKGAEKTEV-VETTQVYTEEETRRAFEETQIDIPGGGSHGGSSMSLWEVM 3517 Query: 268 KLRVVPYDQLWRSTADLKA 212 + ++P DQ R AD +A Sbjct: 3518 QSDMIPEDQRARLMADFQA 3536
>HRX_HUMAN (Q03164) Zinc finger protein HRX (ALL-1) (Trithorax-like protein)| Length = 3969 Score = 28.5 bits (62), Expect = 9.4 Identities = 15/46 (32%), Positives = 27/46 (58%) Frame = +3 Query: 333 STCPL*RNRPISSSQPPGDGSILHPVAGSSKAVRSTMSSKFNFMPV 470 ST P PIS+S+ PGDG + P + ++ + + + S+ + +PV Sbjct: 2552 STSP---TEPISASENPGDGPVAQP-SPNNTSCQDSQSNNYQNLPV 2593
>PSBC_SACOF (Q6ENY0) Photosystem II 44 kDa reaction center protein (P6 protein)| (CP43) Length = 473 Score = 28.5 bits (62), Expect = 9.4 Identities = 19/77 (24%), Positives = 34/77 (44%), Gaps = 1/77 (1%) Frame = +2 Query: 59 IGYVMIVAAFFYFAGDNELWPVGCLQVRR*ATRWRQYAFLLGHLIQS-YGRERLQVCCRA 235 +G ++V YF G + W G VR+ + G+L++S +G E V Sbjct: 170 LGAFLLVLKALYFGGVYDTWAPGGGDVRKITNLTLSPGVIFGYLLKSPFGGEGWIVSVDD 229 Query: 236 PELVVGDHTQLDQLAMV 286 E ++G H L + ++ Sbjct: 230 LEDIIGGHVWLGSICVL 246
>PSBC_SACHY (P0C158) Photosystem II 44 kDa reaction center protein (P6 protein)| (CP43) Length = 473 Score = 28.5 bits (62), Expect = 9.4 Identities = 19/77 (24%), Positives = 34/77 (44%), Gaps = 1/77 (1%) Frame = +2 Query: 59 IGYVMIVAAFFYFAGDNELWPVGCLQVRR*ATRWRQYAFLLGHLIQS-YGRERLQVCCRA 235 +G ++V YF G + W G VR+ + G+L++S +G E V Sbjct: 170 LGAFLLVLKALYFGGVYDTWAPGGGDVRKITNLTLSPGVIFGYLLKSPFGGEGWIVSVDD 229 Query: 236 PELVVGDHTQLDQLAMV 286 E ++G H L + ++ Sbjct: 230 LEDIIGGHVWLGSICVL 246
>PSBC_MAIZE (P48187) Photosystem II 44 kDa reaction center protein (P6 protein)| (CP43) Length = 473 Score = 28.5 bits (62), Expect = 9.4 Identities = 19/77 (24%), Positives = 34/77 (44%), Gaps = 1/77 (1%) Frame = +2 Query: 59 IGYVMIVAAFFYFAGDNELWPVGCLQVRR*ATRWRQYAFLLGHLIQS-YGRERLQVCCRA 235 +G ++V YF G + W G VR+ + G+L++S +G E V Sbjct: 170 LGAFLLVLKALYFGGVYDTWAPGGGDVRKITNLTLSPGVIFGYLLKSPFGGEGWIVSVDD 229 Query: 236 PELVVGDHTQLDQLAMV 286 E ++G H L + ++ Sbjct: 230 LEDIIGGHVWLGSICVL 246
>PSBC_ARATH (P56778) Photosystem II 44 kDa reaction center protein precursor| (P6 protein) (CP43) Length = 473 Score = 28.5 bits (62), Expect = 9.4 Identities = 19/76 (25%), Positives = 34/76 (44%), Gaps = 1/76 (1%) Frame = +2 Query: 59 IGYVMIVAAFFYFAGDNELWPVGCLQVRR*ATRWRQYAFLLGHLIQS-YGRERLQVCCRA 235 +G ++V YF G + W G VR+ + + G+L++S +G E V Sbjct: 170 VGAFLLVFKALYFGGVYDTWAPGGGDVRKITNLTLSPSVIFGYLLKSPFGGEGWIVSVDD 229 Query: 236 PELVVGDHTQLDQLAM 283 E ++G H L + + Sbjct: 230 LEDIIGGHVWLGSICI 245
>KLF17_MOUSE (Q8CFA7) Krueppel-like factor 17 (Zinc finger protein 393) (Germ| cell-specific zinc finger protein) Length = 341 Score = 28.5 bits (62), Expect = 9.4 Identities = 17/41 (41%), Positives = 25/41 (60%), Gaps = 2/41 (4%) Frame = -3 Query: 255 SPTTSSGARQQT*RRSRP*LCMRWPRRKAYCR--HLVAHRR 139 SP+TS GA ++ SRP +C K+Y + HLV+H+R Sbjct: 238 SPSTSRGATRRQSPVSRPYVCTYNSCGKSYTKRSHLVSHQR 278
>SYFB_RHOS4 (Q3J5M6) Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20)| (Phenylalanine--tRNA ligase beta chain) (PheRS) Length = 805 Score = 28.5 bits (62), Expect = 9.4 Identities = 17/54 (31%), Positives = 29/54 (53%), Gaps = 4/54 (7%) Frame = +3 Query: 15 PPPNLLECKIRALVILVMS*LSRPFSTSLEITNYGPLGVYR----FDDEPLDGG 164 P P+ L+ ++R++ + RP S ++ITNY +G+ R FD + GG Sbjct: 238 PSPDWLQARLRSVGL-------RPISALVDITNYFTIGLNRPLHVFDVAKITGG 284
>PLEC1_RAT (P30427) Plectin-1 (PLTN) (PCN)| Length = 4687 Score = 28.5 bits (62), Expect = 9.4 Identities = 23/79 (29%), Positives = 39/79 (49%), Gaps = 10/79 (12%) Frame = -2 Query: 418 DPATGCKMLPSPGGCDEEIGLFLYRGHVDDETIRALQGKE---TGLRDHG-------ELI 269 DP TG ++LP G E+ + + + ++ET RA + + G HG E++ Sbjct: 3673 DPETGLRLLPLRGAEKTEV-VETTQVYTEEETRRAFEETQIDIPGGGSHGGSSMSLWEVM 3731 Query: 268 KLRVVPYDQLWRSTADLKA 212 + ++P DQ R AD +A Sbjct: 3732 QSDMIPEDQRARLMADFQA 3750 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 73,763,991 Number of Sequences: 219361 Number of extensions: 1554261 Number of successful extensions: 4341 Number of sequences better than 10.0: 17 Number of HSP's better than 10.0 without gapping: 4182 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4340 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 3188886965 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
