ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart16d07
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1PIP21_ORYSA (Q8H5N9) Probable aquaporin PIP2.1 (Plasma membrane ... 38 0.007
2PIP27_ARATH (P93004) Aquaporin PIP2.7 (Plasma membrane intrinsic... 35 0.034
3PIP26_ORYSA (Q7XLR1) Probable aquaporin PIP2.6 (Plasma membrane ... 34 0.098
4PIP1_ATRCA (P42767) Aquaporin PIP-type 33 0.13
5PIP25_ARATH (Q9SV31) Probable aquaporin PIP2.5 (Plasma membrane ... 32 0.37
6PIP28_ARATH (Q9ZVX8) Probable aquaporin PIP2.8 (Plasma membrane ... 32 0.49
7Q300_MOUSE (Q02722) Protein Q300 30 1.1
8NU5M_LOCMI (Q36428) NADH-ubiquinone oxidoreductase chain 5 (EC 1... 29 2.4
9NU5M_ANOAR (P51899) NADH-ubiquinone oxidoreductase chain 5 (EC 1... 29 2.4
10NU5M_ANOQU (P33510) NADH-ubiquinone oxidoreductase chain 5 (EC 1... 29 2.4
11NU5M_ANOGA (P34854) NADH-ubiquinone oxidoreductase chain 5 (EC 1... 29 2.4
12ATC3_SCHPO (P22189) Calcium-transporting ATPase 3 (EC 3.6.3.8) 29 2.4
13FPRB_MYCTU (P65528) Probable ferredoxin/ferredoxin--NADP reducta... 29 3.2
14FPRB_MYCBO (P65529) Probable ferredoxin/ferredoxin--NADP reducta... 29 3.2
15FAD6E_ARATH (P46313) Omega-6 fatty acid desaturase, endoplasmic ... 29 3.2
16VHUB_METVO (Q00388) Polyferredoxin protein vhuB 28 4.1
17HEPC1_SALSA (Q801Y3) Hepcidin-1 precursor 28 5.4
18SCNNG_HUMAN (P51170) Amiloride-sensitive sodium channel gamma-su... 28 5.4
19CT059_HUMAN (Q9BYT1) Putative transporter C20orf59 27 9.2
20PIP24_ARATH (Q9FF53) Probable aquaporin PIP2.4 (Plasma membrane ... 27 9.2
21MURF_BACSU (P96613) UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-... 27 9.2
22ZN524_MOUSE (Q9D0B1) Zinc finger protein 524 27 9.2

>PIP21_ORYSA (Q8H5N9) Probable aquaporin PIP2.1 (Plasma membrane intrinsic|
           protein 2a) (PIP2a) (OsPIP2.1)
          Length = 290

 Score = 37.7 bits (86), Expect = 0.007
 Identities = 18/18 (100%), Positives = 18/18 (100%)
 Frame = -1

Query: 380 YILRAGAIKALGSFRSNA 327
           YILRAGAIKALGSFRSNA
Sbjct: 273 YILRAGAIKALGSFRSNA 290



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>PIP27_ARATH (P93004) Aquaporin PIP2.7 (Plasma membrane intrinsic protein 3)|
           (Salt stress-induced major intrinsic protein)
          Length = 280

 Score = 35.4 bits (80), Expect = 0.034
 Identities = 17/18 (94%), Positives = 17/18 (94%)
 Frame = -1

Query: 380 YILRAGAIKALGSFRSNA 327
           YILRA AIKALGSFRSNA
Sbjct: 261 YILRASAIKALGSFRSNA 278



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>PIP26_ORYSA (Q7XLR1) Probable aquaporin PIP2.6 (Plasma membrane intrinsic|
           protein 2.6) (OsPIP2.6)
          Length = 282

 Score = 33.9 bits (76), Expect = 0.098
 Identities = 16/17 (94%), Positives = 16/17 (94%)
 Frame = -1

Query: 380 YILRAGAIKALGSFRSN 330
           YILRA AIKALGSFRSN
Sbjct: 263 YILRAAAIKALGSFRSN 279



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>PIP1_ATRCA (P42767) Aquaporin PIP-type|
          Length = 282

 Score = 33.5 bits (75), Expect = 0.13
 Identities = 15/17 (88%), Positives = 16/17 (94%)
 Frame = -1

Query: 380 YILRAGAIKALGSFRSN 330
           Y+LRA AIKALGSFRSN
Sbjct: 263 YVLRAAAIKALGSFRSN 279



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>PIP25_ARATH (Q9SV31) Probable aquaporin PIP2.5 (Plasma membrane intrinsic|
           protein 2d) (PIP2d)
          Length = 286

 Score = 32.0 bits (71), Expect = 0.37
 Identities = 14/16 (87%), Positives = 16/16 (100%)
 Frame = -1

Query: 380 YILRAGAIKALGSFRS 333
           ++LRAGAIKALGSFRS
Sbjct: 267 FVLRAGAIKALGSFRS 282



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>PIP28_ARATH (Q9ZVX8) Probable aquaporin PIP2.8 (Plasma membrane intrinsic|
           protein 3b) (PIP3b)
          Length = 278

 Score = 31.6 bits (70), Expect = 0.49
 Identities = 15/17 (88%), Positives = 15/17 (88%)
 Frame = -1

Query: 380 YILRAGAIKALGSFRSN 330
           YILRA AIKAL SFRSN
Sbjct: 259 YILRAAAIKALASFRSN 275



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>Q300_MOUSE (Q02722) Protein Q300|
          Length = 77

 Score = 30.4 bits (67), Expect = 1.1
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = -1

Query: 197 YLCVGSCICVCAQSCVPCVVIRSMGSLVLISPHSFSC 87
           Y+CV  C+CVC   C    + +S G+L   S  +  C
Sbjct: 26  YVCVCVCVCVCVCVCTLTCMCKSGGNLGCSSSGAIHC 62



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>NU5M_LOCMI (Q36428) NADH-ubiquinone oxidoreductase chain 5 (EC 1.6.5.3) (NADH|
           dehydrogenase subunit 5)
          Length = 572

 Score = 29.3 bits (64), Expect = 2.4
 Identities = 15/45 (33%), Positives = 25/45 (55%)
 Frame = -1

Query: 197 YLCVGSCICVCAQSCVPCVVIRSMGSLVLISPHSFSCFNLATICM 63
           ++C GS I     S      IR MGS++   P +  CFN++++C+
Sbjct: 307 FMCAGSMIHNLRDS----QDIRFMGSIIHFMPLTSICFNVSSLCL 347



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>NU5M_ANOAR (P51899) NADH-ubiquinone oxidoreductase chain 5 (EC 1.6.5.3) (NADH|
           dehydrogenase subunit 5) (Fragment)
          Length = 384

 Score = 29.3 bits (64), Expect = 2.4
 Identities = 17/45 (37%), Positives = 24/45 (53%)
 Frame = -1

Query: 197 YLCVGSCICVCAQSCVPCVVIRSMGSLVLISPHSFSCFNLATICM 63
           ++C GS I     S      IR MGSL +  P + SCFN+A + +
Sbjct: 313 FMCAGSIIHNMKNS----QDIRMMGSLSMSMPLTCSCFNVANLAL 353



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>NU5M_ANOQU (P33510) NADH-ubiquinone oxidoreductase chain 5 (EC 1.6.5.3) (NADH|
           dehydrogenase subunit 5)
          Length = 576

 Score = 29.3 bits (64), Expect = 2.4
 Identities = 17/45 (37%), Positives = 24/45 (53%)
 Frame = -1

Query: 197 YLCVGSCICVCAQSCVPCVVIRSMGSLVLISPHSFSCFNLATICM 63
           ++C GS I     S      IR MGSL +  P + SCFN+A + +
Sbjct: 309 FMCAGSIIHNMKNS----QDIRMMGSLSMSMPLTCSCFNVANLAL 349



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>NU5M_ANOGA (P34854) NADH-ubiquinone oxidoreductase chain 5 (EC 1.6.5.3) (NADH|
           dehydrogenase subunit 5)
          Length = 580

 Score = 29.3 bits (64), Expect = 2.4
 Identities = 17/45 (37%), Positives = 24/45 (53%)
 Frame = -1

Query: 197 YLCVGSCICVCAQSCVPCVVIRSMGSLVLISPHSFSCFNLATICM 63
           ++C GS I     S      IR MGSL +  P + SCFN+A + +
Sbjct: 313 FMCAGSIIHNMKNS----QDIRMMGSLSMSMPLTCSCFNVANLAL 353



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>ATC3_SCHPO (P22189) Calcium-transporting ATPase 3 (EC 3.6.3.8)|
          Length = 1037

 Score = 29.3 bits (64), Expect = 2.4
 Identities = 18/62 (29%), Positives = 30/62 (48%), Gaps = 7/62 (11%)
 Frame = +1

Query: 22  GLMIWIEGGDVGSIIHM------VAKLKQEKECGLIKT-SDPMDRITTHGTHDWAHTHMQ 180
           G   WIEGG + +II +      + + K EK    ++T + PM  +T     D   +H+ 
Sbjct: 80  GTTDWIEGGVISAIIVLNITVGFIQEYKAEKTMDSLRTLASPMAHVTRSSKTDAIDSHLL 139

Query: 181 LP 186
           +P
Sbjct: 140 VP 141



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>FPRB_MYCTU (P65528) Probable ferredoxin/ferredoxin--NADP reductase (EC|
           1.18.1.2) (FNR)
          Length = 575

 Score = 28.9 bits (63), Expect = 3.2
 Identities = 20/61 (32%), Positives = 30/61 (49%), Gaps = 4/61 (6%)
 Frame = -1

Query: 320 VIHVMCMQD*SNGDLC---CVHPSKEKAAFATSRQ-FSWPLQWSCYLCVGSCICVCAQSC 153
           VI   C  D S    C   C+HP+ ++  FATS   +  P+  +C  C G+C+  C  S 
Sbjct: 4   VITQSCCNDASCVFACPVNCIHPTPDEPGFATSEMLYIDPV--ACVDC-GACVTACPVSA 60

Query: 152 V 150
           +
Sbjct: 61  I 61



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>FPRB_MYCBO (P65529) Probable ferredoxin/ferredoxin--NADP reductase (EC|
           1.18.1.2) (FNR)
          Length = 575

 Score = 28.9 bits (63), Expect = 3.2
 Identities = 20/61 (32%), Positives = 30/61 (49%), Gaps = 4/61 (6%)
 Frame = -1

Query: 320 VIHVMCMQD*SNGDLC---CVHPSKEKAAFATSRQ-FSWPLQWSCYLCVGSCICVCAQSC 153
           VI   C  D S    C   C+HP+ ++  FATS   +  P+  +C  C G+C+  C  S 
Sbjct: 4   VITQSCCNDASCVFACPVNCIHPTPDEPGFATSEMLYIDPV--ACVDC-GACVTACPVSA 60

Query: 152 V 150
           +
Sbjct: 61  I 61



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>FAD6E_ARATH (P46313) Omega-6 fatty acid desaturase, endoplasmic reticulum (EC|
           1.14.19.-) (Delta-12 desaturase)
          Length = 383

 Score = 28.9 bits (63), Expect = 3.2
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -1

Query: 221 SWPLQWSCYLCVGSCICVCAQSC 153
           +WPL W+C  CV + I V A  C
Sbjct: 85  AWPLYWACQGCVLTGIWVIAHEC 107



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>VHUB_METVO (Q00388) Polyferredoxin protein vhuB|
          Length = 398

 Score = 28.5 bits (62), Expect = 4.1
 Identities = 14/46 (30%), Positives = 20/46 (43%)
 Frame = -1

Query: 203 SCYLCVGSCICVCAQSCVPCVVIRSMGSLVLISPHSFSCFNLATIC 66
           +C LC       CA +C    ++ + G L+  S     C N AT C
Sbjct: 33  TCTLCFS-----CASACPTGALVENNGKLIYNSSKCIKCGNCATAC 73



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>HEPC1_SALSA (Q801Y3) Hepcidin-1 precursor|
          Length = 86

 Score = 28.1 bits (61), Expect = 5.4
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = -3

Query: 186 RQLHMRMCPVMRAVCCNSVHGIAC 115
           RQ+H+ +C     +CCN  H I C
Sbjct: 61  RQIHLSLC----GLCCNCCHNIGC 80



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>SCNNG_HUMAN (P51170) Amiloride-sensitive sodium channel gamma-subunit|
           (Epithelial Na+ channel gamma subunit) (Gamma ENaC)
           (Nonvoltage-gated sodium channel 1 gamma subunit)
           (SCNEG) (Gamma NaCH)
          Length = 649

 Score = 28.1 bits (61), Expect = 5.4
 Identities = 18/73 (24%), Positives = 32/73 (43%), Gaps = 4/73 (5%)
 Frame = +1

Query: 64  IHMVAKLKQEKECGLIKTSDPMDRITTHGTH----DWAHTHMQLPTHK*HDHCSGQLNCR 231
           +H   + K  ++CG  + S P+     +  +    +W + + QL  H+       +L C+
Sbjct: 395 LHSCFQTKMVEKCGCAQYSQPLPPAANYCNYQQHPNWMYCYYQL--HR--AFVQEELGCQ 450

Query: 232 EVAKAAFSLDGWT 270
            V K A S   WT
Sbjct: 451 SVCKEACSFKEWT 463



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>CT059_HUMAN (Q9BYT1) Putative transporter C20orf59|
          Length = 436

 Score = 27.3 bits (59), Expect = 9.2
 Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 3/48 (6%)
 Frame = -1

Query: 263 PSKEKAAFATSRQFSWP--LQWSCYLCVGSCICVCAQSCVP-CVVIRS 129
           P + +   A   Q+S P    W+  L +G+C+  CA+S +P C V  S
Sbjct: 5   PDEARRDMAGDTQWSRPECQAWTGTLLLGTCLLYCARSSMPICTVSMS 52



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>PIP24_ARATH (Q9FF53) Probable aquaporin PIP2.4 (Plasma membrane intrinsic|
           protein 2.4)
          Length = 291

 Score = 27.3 bits (59), Expect = 9.2
 Identities = 13/16 (81%), Positives = 14/16 (87%)
 Frame = -1

Query: 380 YILRAGAIKALGSFRS 333
           +ILRA AIKALGSF S
Sbjct: 268 FILRAAAIKALGSFGS 283



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>MURF_BACSU (P96613) UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase|
           (EC 6.3.2.10) (UDP-MurNAc-pentapeptide synthetase)
           (D-alanyl-D-alanine-adding enzyme)
          Length = 457

 Score = 27.3 bits (59), Expect = 9.2
 Identities = 16/47 (34%), Positives = 25/47 (53%)
 Frame = +1

Query: 10  LLLGGLMIWIEGGDVGSIIHMVAKLKQEKECGLIKTSDPMDRITTHG 150
           L+LG ++   E GD+    H        KECG + + D +DR+ T+G
Sbjct: 357 LVLGDML---ELGDLEETFH--------KECGAVISPDKIDRVFTYG 392



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>ZN524_MOUSE (Q9D0B1) Zinc finger protein 524|
          Length = 321

 Score = 27.3 bits (59), Expect = 9.2
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = -3

Query: 312 CDVHARLKQWRPVLCPSIQRES 247
           C++HA L+ +R VLCP   RE+
Sbjct: 156 CNIHAGLRPFRCVLCPRRFREA 177


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 54,950,030
Number of Sequences: 219361
Number of extensions: 1046922
Number of successful extensions: 2660
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 2579
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2652
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 1396778976
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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