>emb|AL357354.10| Human DNA sequence from clone RP11-465C5 on chromosome Xq21.2-22.1
              Contains a phosphoribosylaminoimidazole carboxylase,
              phosphoribosylaminoimidazole succinocarboxamide synthetase
              (PAICS) pseudogene, complete sequence
          Length = 194612

 Score = 42.1 bits (21), Expect = 0.45
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 47     cacatgatattacactatttg 67
              |||||||||||||||||||||
Sbjct: 142271 cacatgatattacactatttg 142291

>gb|CP000356.1| Sphingopyxis alaskensis RB2256, complete genome
          Length = 3345170

 Score = 40.1 bits (20), Expect = 1.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 115     aacaaccgcatggaactgat 134
               ||||||||||||||||||||
Sbjct: 1172422 aacaaccgcatggaactgat 1172403

>gb|AC123073.4| Mus musculus BAC clone RP23-111E4 from 6, complete sequence
          Length = 191693

 Score = 40.1 bits (20), Expect = 1.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 85     ggaaagggggagataacata 104
              ||||||||||||||||||||
Sbjct: 179201 ggaaagggggagataacata 179220

>gb|AC129333.4| Mus musculus BAC clone RP23-104F23 from 6, complete sequence
          Length = 216849

 Score = 40.1 bits (20), Expect = 1.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 99    aacataaataaacctcaaca 118
             ||||||||||||||||||||
Sbjct: 55281 aacataaataaacctcaaca 55300

>gb|AC131663.3| Mus musculus BAC clone RP23-258B18 from 6, complete sequence
          Length = 191685

 Score = 40.1 bits (20), Expect = 1.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 85     ggaaagggggagataacata 104
              ||||||||||||||||||||
Sbjct: 171085 ggaaagggggagataacata 171066

>emb|CR387990.9| Opossum DNA sequence from clone XX-068C1, complete sequence
          Length = 118866

 Score = 40.1 bits (20), Expect = 1.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 3     ataaaggaataacattccttcatt 26
             |||||||||| |||||||||||||
Sbjct: 80913 ataaaggaatcacattccttcatt 80890

>gb|AY957499.1| Bos taurus glutamate-cysteine ligase catalytic subunit (GCLC), MHC
             class II antigen (DSB), MHC class II antigen (DYA), MHC
             class II antigen (DYB), MHC class II antigen (DOB),
             transporter 2 ATP-binding cassette sub-family B (TAP2),
             proteasome subunit beta type 8 (PSMB8), transporter 1
             ATP-binding cassette sub-family B (TAP1), proteosome
             subunit beta type 9 (PSMB9), histone H2B-like (H2B), MHC
             class II antigen (DMB), MHC class II antigen (DMA),
             bromodomain containing 2 (BRD2), MHC class II antigen
             (DOA), collagen type XI alpha 2 (COL11A2), retinoid X
             receptor beta (RXRB), solute carrier family 39 zinc
             transporter member 7 (HKE4), and hydroxysteroid (17-beta)
             dehydrogenase 8 (HKE6) genes, complete cds; and ring
             finger protein 1 (RING1) gene, partial cds
          Length = 447010

 Score = 40.1 bits (20), Expect = 1.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 97    ataacataaataaacctcaa 116
             ||||||||||||||||||||
Sbjct: 12170 ataacataaataaacctcaa 12189

>emb|CR387999.7| Opossum DNA sequence from clone XX-158F12, complete sequence
          Length = 169093

 Score = 40.1 bits (20), Expect = 1.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 3      ataaaggaataacattccttcatt 26
              |||||||||| |||||||||||||
Sbjct: 103098 ataaaggaatcacattccttcatt 103121

>gb|AC163035.2| Mus musculus BAC clone RP23-301L2 from chromosome 6, complete sequence
          Length = 196798

 Score = 40.1 bits (20), Expect = 1.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 85     ggaaagggggagataacata 104
              ||||||||||||||||||||
Sbjct: 131499 ggaaagggggagataacata 131518

>gb|AE002098.2| Neisseria meningitidis MC58, complete genome
          Length = 2272360

 Score = 40.1 bits (20), Expect = 1.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 114     caacaaccgcatggaactga 133
               ||||||||||||||||||||
Sbjct: 1681760 caacaaccgcatggaactga 1681779

>gb|AC153641.3| Mus musculus 6 BAC RP23-5F24 (Roswell Park Cancer Institute (C57BL/6J
            Female) Mouse BAC Library) complete sequence
          Length = 193417

 Score = 40.1 bits (20), Expect = 1.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 99   aacataaataaacctcaaca 118
            ||||||||||||||||||||
Sbjct: 2656 aacataaataaacctcaaca 2637

>gb|CP000009.1| Gluconobacter oxydans 621H, complete genome
          Length = 2702173

 Score = 40.1 bits (20), Expect = 1.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 114    caacaaccgcatggaactga 133
              ||||||||||||||||||||
Sbjct: 193452 caacaaccgcatggaactga 193433

>emb|AL136001.6|CNS01DVR Human chromosome 14 DNA sequence BAC R-865F7 of library RPCI-11 from
              chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 185967

 Score = 40.1 bits (20), Expect = 1.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 97     ataacataaataaacctcaa 116
              ||||||||||||||||||||
Sbjct: 143372 ataacataaataaacctcaa 143353

>gb|AC147235.3| Mus musculus BAC clone RP23-353B7 from 6, complete sequence
          Length = 193668

 Score = 40.1 bits (20), Expect = 1.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 85     ggaaagggggagataacata 104
              ||||||||||||||||||||
Sbjct: 169609 ggaaagggggagataacata 169590

>emb|AL359399.3|CNS05TEV Human chromosome 14 DNA sequence BAC C-2223O18 of library CalTech-D from
              chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 134213

 Score = 40.1 bits (20), Expect = 1.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 97     ataacataaataaacctcaa 116
              ||||||||||||||||||||
Sbjct: 121704 ataacataaataaacctcaa 121723

>gb|CP000110.1| Synechococcus sp. CC9605, complete genome
          Length = 2510659

 Score = 38.2 bits (19), Expect = 7.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                  
Query: 114     caacaaccgcatggaactg 132
               |||||||||||||||||||
Sbjct: 2273187 caacaaccgcatggaactg 2273169

>gb|AC167665.2| Culex pipiens quinquefasciatus, clone Culex pipiens
             quinquefasciatus-3940135D9, complete sequence
          Length = 93659

 Score = 38.2 bits (19), Expect = 7.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 114   caacaaccgcatggaactg 132
             |||||||||||||||||||
Sbjct: 77211 caacaaccgcatggaactg 77229

>gb|AF230978.1| Trypanosoma cruzi ABCA1 transporter gene, complete cds
          Length = 5253

 Score = 38.2 bits (19), Expect = 7.0
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                  
Query: 112 ctcaacaaccgcatggaactgat 134
           ||||||||||||| |||||||||
Sbjct: 294 ctcaacaaccgcaaggaactgat 272

>gb|CP000094.1| Pseudomonas fluorescens PfO-1, complete genome
          Length = 6438405

 Score = 38.2 bits (19), Expect = 7.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                  
Query: 114     caacaaccgcatggaactg 132
               |||||||||||||||||||
Sbjct: 2470231 caacaaccgcatggaactg 2470249

>gb|DQ178619.1| Homo sapiens RAB38, member RAS oncogene family (RAB38) gene, complete
             cds
          Length = 65550

 Score = 38.2 bits (19), Expect = 7.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 17    ttccttcattttgagatca 35
             |||||||||||||||||||
Sbjct: 30653 ttccttcattttgagatca 30671

>ref|XM_813005.1| Trypanosoma cruzi strain CL Brener ATP-binding cassette transporter
           ABCA1 (Tc00.1047053504149.20) partial mRNA
          Length = 5253

 Score = 38.2 bits (19), Expect = 7.0
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                  
Query: 112 ctcaacaaccgcatggaactgat 134
           ||||||||||||| |||||||||
Sbjct: 294 ctcaacaaccgcaaggaactgat 272

>ref|XM_798814.1| Trypanosoma cruzi strain CL Brener ATP-binding cassette transporter
           ABCA1 (Tc00.1047053503573.9) partial mRNA
          Length = 2903

 Score = 38.2 bits (19), Expect = 7.0
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                  
Query: 112 ctcaacaaccgcatggaactgat 134
           ||||||||||||| |||||||||
Sbjct: 294 ctcaacaaccgcaaggaactgat 272

>gb|AC125219.3| Mus musculus BAC clone RP23-67O7 from 1, complete sequence
          Length = 178998

 Score = 38.2 bits (19), Expect = 7.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 12     taacattccttcattttga 30
              |||||||||||||||||||
Sbjct: 114187 taacattccttcattttga 114205

>emb|AL161450.14| Human DNA sequence from clone RP11-39K24 on chromosome 9 Contains the 3'
              end of the JAK2 gene for Janus kinase 2 (a protein tyrosine
              kinase), a casein kinase pseudogene, a
              trans-prenyltransferase (TPT) pseudogene, a NADH
              dehydrogenase 6 (MTND6) pseuodgene, a  NADH dehydrogenase 1
              (MTND1) pseudogene, a cytochrome c oxidase I (MTCO1)
              pseudogene, a  cytochrome c oxidase II (MTCO2) pseudogene,
              an ATP synthase 6 (MTATP6) pseudogene, a cytochrome c
              oxidase III (MTCO3) pseudogene, a NADH dehydrogenase 4
              (MTND4)pseudogene, a pseudogene similar to part of NADH
              dehydrogenase 5 (MTND5), a transcription factor 3 (E2A
              immunoglobulin enhancer binding factors E12/E47) (TCF3)
              pseudogene, an immunoglobulin heavy constant epsilon
              pseudogene 2 (IGHEP2), a novel gene, the INSL6 gene for
              insulin-like 6 (RIF1) and 4 CpG islands, complete sequence
          Length = 171146

 Score = 38.2 bits (19), Expect = 7.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 12     taacattccttcattttga 30
              |||||||||||||||||||
Sbjct: 150103 taacattccttcattttga 150085

>emb|BX569695.1| Synechococcus sp. WH8102 complete genome; segment 7/7
          Length = 344615

 Score = 38.2 bits (19), Expect = 7.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 114    caacaaccgcatggaactg 132
              |||||||||||||||||||
Sbjct: 151916 caacaaccgcatggaactg 151898

>gb|AC073856.17| Homo sapiens 3 BAC RP11-938G16 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 177363

 Score = 38.2 bits (19), Expect = 7.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 9      gaataacattccttcattt 27
              |||||||||||||||||||
Sbjct: 115566 gaataacattccttcattt 115548

>gb|AC129961.2| Sus scrofa, clone RP44-428N16, complete sequence
          Length = 154348

 Score = 38.2 bits (19), Expect = 7.0
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 99    aacataaataaacctcaacaacc 121
             ||||| |||||||||||||||||
Sbjct: 23798 aacatgaataaacctcaacaacc 23776

>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
               sequence
          Length = 22696651

 Score = 38.2 bits (19), Expect = 7.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                  
Query: 90      gggggagataacataaata 108
               |||||||||||||||||||
Sbjct: 1606699 gggggagataacataaata 1606717

>dbj|AP005746.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
              clone:OSJNBa0018I03
          Length = 145818

 Score = 38.2 bits (19), Expect = 7.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 90     gggggagataacataaata 108
              |||||||||||||||||||
Sbjct: 134943 gggggagataacataaata 134961

>dbj|AP001709.1| Homo sapiens genomic DNA, chromosome 21q, section 53/105
          Length = 340000

 Score = 38.2 bits (19), Expect = 7.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 5      aaaggaataacattccttc 23
              |||||||||||||||||||
Sbjct: 135258 aaaggaataacattccttc 135240

>gb|AY761135.3| Bos taurus BTA01 36937 genomic sequence contig containing highly
            polymorphic single nucleotide sites
          Length = 2634

 Score = 38.2 bits (19), Expect = 7.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 3    ataaaggaataacattcct 21
            |||||||||||||||||||
Sbjct: 1699 ataaaggaataacattcct 1717

>dbj|AP001642.4| Homo sapiens genomic DNA, chromosome 11q clone:RP11-685B24, complete
             sequences
          Length = 72000

 Score = 38.2 bits (19), Expect = 7.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 17    ttccttcattttgagatca 35
             |||||||||||||||||||
Sbjct: 28732 ttccttcattttgagatca 28714

>emb|AL645602.14| Mouse DNA sequence from clone RP23-79E13 on chromosome 11, complete
             sequence
          Length = 240483

 Score = 38.2 bits (19), Expect = 7.0
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                    
Query: 6     aaggaataacattccttcatttt 28
             |||||||||||||||| ||||||
Sbjct: 47235 aaggaataacattcctccatttt 47257

>emb|AL732404.7| Mouse DNA sequence from clone RP23-177D21 on chromosome 2, complete
              sequence
          Length = 220275

 Score = 38.2 bits (19), Expect = 7.0
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                     
Query: 10     aataacattccttcattttgaga 32
              ||||| |||||||||||||||||
Sbjct: 125291 aataagattccttcattttgaga 125269

>dbj|AP000244.1| Homo sapiens genomic DNA, chromosome 21q22.1, D21S226-AML region,
             clone:B282I5, complete sequence
          Length = 149898

 Score = 38.2 bits (19), Expect = 7.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 5     aaaggaataacattccttc 23
             |||||||||||||||||||
Sbjct: 53365 aaaggaataacattccttc 53347

>dbj|AP000204.1| Homo sapiens genomic DNA, chromosome 21q22.1, D21S226-AML region, clone
             f43D11-119B8, segment 2/12, complete sequence
          Length = 100000

 Score = 38.2 bits (19), Expect = 7.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 5     aaaggaataacattccttc 23
             |||||||||||||||||||
Sbjct: 70246 aaaggaataacattccttc 70228

>dbj|AP005436.1| Homo sapiens genomic DNA, chromosome 11 clone:RP11-164N3, complete
              sequence
          Length = 147520

 Score = 38.2 bits (19), Expect = 7.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 17     ttccttcattttgagatca 35
              |||||||||||||||||||
Sbjct: 141287 ttccttcattttgagatca 141269


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,540,797
Number of Sequences: 3902068
Number of extensions: 1540797
Number of successful extensions: 108192
Number of sequences better than 10.0: 37
Number of HSP's better than 10.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 108045
Number of HSP's gapped (non-prelim): 147
length of query: 147
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 126
effective length of database: 17,151,101,840
effective search space: 2161038831840
effective search space used: 2161038831840
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)