>ALG10_EMENI (Q5B0M8) Alpha-1,2 glucosyltransferase alg10 (EC 2.4.1.-)|
           (Alpha-2-glucosyltransferase alg10)
           (Dolichyl-phosphoglucose-dependent glucosyltransferase
           alg10) (Asparagine-linked glycosylation protein 10)
          Length = 608

 Score = 32.0 bits (71), Expect = 0.85
 Identities = 20/67 (29%), Positives = 31/67 (46%)
 Frame = +3

Query: 150 SHTLGSLTNLLRGAYIAFDEASPLVTASGAGALSAAVRYRVTIDMVRT*GDKGPDGCIEG 329
           S+ + +L  LLRG+    D  +   T + A A+   +R +  +D VR   +  P G    
Sbjct: 74  SYAVCALILLLRGSPEHLDPPALRATNAAAAAVLLPLRLQTALDTVRKQRNTRPSGAWLS 133

Query: 330 HTTLGCC 350
           HT L  C
Sbjct: 134 HTVLNIC 140

>SPN90_MOUSE (Q9ESJ4) SH3 adapter protein SPIN90 (NCK-interacting protein with|
           SH3 domain) (SH3 protein interacting with Nck, 90 kDa)
           (VacA-interacting protein, 54 kDa) (VIP54)
           (N-WASP-interacting protein, 90kDa) (Wiskott-Aldrich
           syndrome protein-binding
          Length = 714

 Score = 30.8 bits (68), Expect = 1.9
 Identities = 19/73 (26%), Positives = 32/73 (43%)
 Frame = -1

Query: 439 GGNTSRRRNGQKQKLSSKHDVSSEDEMLSPQQPRVV*PSMQPSGPLSPYVLTMSMVTRYR 260
           GG T+    G      S    +S D + +   P  + PS  P+ P  P     + V++ +
Sbjct: 193 GGRTAIPSGGSSVSSGSSASSTSMDTLYTGSSPSELGPSCSPTPPPVPRRGAHTTVSQPQ 252

Query: 259 TAADRAPAPEAVT 221
            +  +AP+PE  T
Sbjct: 253 PSPSKAPSPEPPT 265

>CTCF_RAT (Q9R1D1) Transcriptional repressor CTCF (CCCTC-binding factor)|
           (CTCFL paralog) (11-zinc finger protein)
          Length = 737

 Score = 29.6 bits (65), Expect = 4.2
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = -1

Query: 439 GGNTSRRRNGQKQKLSSKHDVSSEDEMLSP 350
           GG T + + G+K+K+ SK + SS+ E   P
Sbjct: 588 GGETKKSKRGRKRKMRSKKEDSSDSENAEP 617

>CTCF_HUMAN (P49711) Transcriptional repressor CTCF (CCCTC-binding factor)|
           (CTCFL paralog) (11-zinc finger protein)
          Length = 727

 Score = 29.6 bits (65), Expect = 4.2
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = -1

Query: 439 GGNTSRRRNGQKQKLSSKHDVSSEDEMLSP 350
           GG T + + G+K+K+ SK + SS+ E   P
Sbjct: 588 GGETKKSKRGRKRKMRSKKEDSSDSENAEP 617

>SYN2_MOUSE (Q64332) Synapsin-2 (Synapsin II)|
          Length = 586

 Score = 29.6 bits (65), Expect = 4.2
 Identities = 23/77 (29%), Positives = 32/77 (41%), Gaps = 7/77 (9%)
 Frame = -1

Query: 406 KQKLSSKHDVSSEDEMLSPQQP-------RVV*PSMQPSGPLSPYVLTMSMVTRYRTAAD 248
           K+  SSK           P QP       +V+ P   PSGP  P   + S  +   ++A 
Sbjct: 442 KEPDSSKTPPQRPPPQGGPGQPQGMQPPGKVLPPRRLPSGPSLPSSSSSSSSSSSSSSAP 501

Query: 247 RAPAPEAVTRGDASSKA 197
           + P     T GDASS +
Sbjct: 502 QRPGGPTTTHGDASSSS 518

>AMPH_HUMAN (P49418) Amphiphysin|
          Length = 695

 Score = 29.3 bits (64), Expect = 5.5
 Identities = 18/66 (27%), Positives = 26/66 (39%)
 Frame = -1

Query: 394 SSKHDVSSEDEMLSPQQPRVV*PSMQPSGPLSPYVLTMSMVTRYRTAADRAPAPEAVTRG 215
           +S H+   E+E+    +P+       P GP S    T  + T  +   D  P P A   G
Sbjct: 548 ASNHEEEGENEITIGAEPKETTEDAAPPGPTSE---TPELATEQKPIQDPQPTPSAPAMG 604

Query: 214 DASSKA 197
            A   A
Sbjct: 605 AADQLA 610

>LRC41_HUMAN (Q15345) Leucine-rich repeat-containing protein 41 (Protein Muf1)|
          Length = 843

 Score = 29.3 bits (64), Expect = 5.5
 Identities = 25/86 (29%), Positives = 36/86 (41%), Gaps = 2/86 (2%)
 Frame = -1

Query: 469 SDAKQAPRARGGNTSRRRNGQKQKLSSKHDVSSEDEMLSPQQPRVV*PSMQ--PSGPLSP 296
           S+AKQ PRA       RR+ Q+   +   D+  E   L P       P  +  PS P + 
Sbjct: 286 SEAKQMPRAAPATRVTRRSTQESLTAGGTDLKRE---LHPPATSHEAPGTKRSPSAPAAT 342

Query: 295 YVLTMSMVTRYRTAADRAPAPEAVTR 218
              + S  +  R  A  AP P+ + R
Sbjct: 343 SSASSSTSSYKRAPASSAPQPKPLKR 368

>RS3A_XENTR (Q642T2) 40S ribosomal protein S3a|
          Length = 263

 Score = 29.3 bits (64), Expect = 5.5
 Identities = 13/23 (56%), Positives = 16/23 (69%)
 Frame = -2

Query: 477 LGRVMPSKRQGREAGTPAGDETG 409
           LG++M    +G  AG PAGDETG
Sbjct: 224 LGKLMELHGEGGGAGKPAGDETG 246

>HTF4_RAT (P51514) Transcription factor 12 (Transcription factor HTF-4)|
           (E-box-binding protein) (Salivary-specific cAMP response
           element-binding protein alpha) (SCBP alpha) (DNA-binding
           protein HTF4)
          Length = 707

 Score = 28.9 bits (63), Expect = 7.2
 Identities = 13/42 (30%), Positives = 19/42 (45%)
 Frame = +2

Query: 152 SHTRFSYKPSKGGLHSLRRSIPPRNSFRRWRSIGCSAIPSDH 277
           SH R SY P       +  S+PP +SF R  +     + + H
Sbjct: 271 SHDRLSYPPHSVSPTDINTSLPPMSSFHRGSTSSSPYVAASH 312

>HTF4_MOUSE (Q61286) Transcription factor 12 (Transcription factor HTF-4)|
           (E-box-binding protein) (DNA-binding protein HTF4)
           (Class A helix-loop-helix transcription factor ME1)
          Length = 706

 Score = 28.9 bits (63), Expect = 7.2
 Identities = 13/42 (30%), Positives = 19/42 (45%)
 Frame = +2

Query: 152 SHTRFSYKPSKGGLHSLRRSIPPRNSFRRWRSIGCSAIPSDH 277
           SH R SY P       +  S+PP +SF R  +     + + H
Sbjct: 271 SHDRLSYPPHSVSPTDINTSLPPMSSFHRGSTSSSPYVAASH 312

>HTF4_CHICK (P30985) Transcription factor 12 (Transcription factor HTF-4)|
           (E-box-binding protein) (Class A helix-loop-helix
           transcription factor GE1) (Fragment)
          Length = 657

 Score = 28.9 bits (63), Expect = 7.2
 Identities = 13/42 (30%), Positives = 19/42 (45%)
 Frame = +2

Query: 152 SHTRFSYKPSKGGLHSLRRSIPPRNSFRRWRSIGCSAIPSDH 277
           SH R SY P       +  S+PP +SF R  +     + + H
Sbjct: 219 SHDRLSYPPHSVSPTDINTSLPPMSSFHRGSTSSSPYVAASH 260

>HTF4_HUMAN (Q99081) Transcription factor 12 (Transcription factor HTF-4)|
           (E-box-binding protein) (DNA-binding protein HTF4)
          Length = 682

 Score = 28.9 bits (63), Expect = 7.2
 Identities = 13/42 (30%), Positives = 19/42 (45%)
 Frame = +2

Query: 152 SHTRFSYKPSKGGLHSLRRSIPPRNSFRRWRSIGCSAIPSDH 277
           SH R SY P       +  S+PP +SF R  +     + + H
Sbjct: 271 SHDRLSYPPHSVSPTDINTSLPPMSSFHRGSTSSSPYVAASH 312


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 60,993,377
Number of Sequences: 219361
Number of extensions: 1090245
Number of successful extensions: 2842
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 2794
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2840
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3188886965
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)