ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart16c11
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1EXB1A_MAIZE (P58738) Beta-expansin 1a precursor (Pollen allergen... 47 2e-05
2EXB1B_MAIZE (Q07154) Beta-expansin 1b (Pollen allergen Zea m 1) ... 47 3e-05
3EXPB4_ARATH (Q9SHD1) Putative beta-expansin 4 precursor (AtEXPB4... 40 0.002
4EXPB2_ARATH (Q9SHY6) Putative beta-expansin 2 precursor (AtEXPB2... 40 0.002
5MPAC1_CYNDA (O04701) Major pollen allergen Cyn d 1 40 0.002
6EXPB5_ARATH (Q9M203) Putative beta-expansin 5 precursor (AtEXPB5... 33 0.28
7EXPB3_ARATH (Q9M0I2) Beta-expansin 3 precursor (AtEXPB3) (At-EXP... 33 0.36
8NPYR_DROME (P25931) Neuropeptide Y receptor (NPY-R) (PR4 receptor) 32 0.81
9EXPB1_ARATH (Q9SKU2) Beta-expansin 1 precursor (AtEXPB1) (At-EXP... 31 1.4
10SUR2_CAEEL (Q10669) Protein sur-2 30 2.3
11E78C_DROME (P45447) Ecdysone-induced protein 78C (DR-78) 30 3.1
12MPAP1_PHLPR (P43213) Pollen allergen Phl p 1 precursor (Phl p I) 29 6.8
13FADL_SHIFL (P59741) Long-chain fatty acid transport protein prec... 28 8.9
14FADL_ECOLI (P10384) Long-chain fatty acid transport protein prec... 28 8.9
15FADL_ECO57 (Q8XCN6) Long-chain fatty acid transport protein prec... 28 8.9
16NPY5R_HUMAN (Q15761) Neuropeptide Y receptor type 5 (NPY5-R) (NP... 28 8.9

>EXB1A_MAIZE (P58738) Beta-expansin 1a precursor (Pollen allergen Zea m 1) (Zea|
           m I)
          Length = 269

 Score = 47.0 bits (110), Expect = 2e-05
 Identities = 20/31 (64%), Positives = 26/31 (83%)
 Frame = -3

Query: 464 ITSDSGKKLVANNVIPANWRPNTDYRSFVQF 372
           +TS+SGKK++A +VIPANWRP+  Y S VQF
Sbjct: 238 LTSESGKKVIAKDVIPANWRPDAVYTSNVQF 268



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>EXB1B_MAIZE (Q07154) Beta-expansin 1b (Pollen allergen Zea m 1) (Zea m I)|
           (Fragment)
          Length = 191

 Score = 46.6 bits (109), Expect = 3e-05
 Identities = 19/31 (61%), Positives = 26/31 (83%)
 Frame = -3

Query: 464 ITSDSGKKLVANNVIPANWRPNTDYRSFVQF 372
           +TS+SGKK++A ++IPANWRP+  Y S VQF
Sbjct: 160 LTSESGKKVIAKDIIPANWRPDAVYTSNVQF 190



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>EXPB4_ARATH (Q9SHD1) Putative beta-expansin 4 precursor (AtEXPB4) (At-EXPB4)|
           (Ath-ExpBeta-1.1)
          Length = 259

 Score = 40.4 bits (93), Expect = 0.002
 Identities = 17/30 (56%), Positives = 22/30 (73%)
 Frame = -3

Query: 461 TSDSGKKLVANNVIPANWRPNTDYRSFVQF 372
           + +S K +VA NVIPANW+P+  YRS V F
Sbjct: 230 SGESHKVIVAYNVIPANWKPDESYRSIVNF 259



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>EXPB2_ARATH (Q9SHY6) Putative beta-expansin 2 precursor (AtEXPB2) (At-EXPB2)|
           (Ath-ExpBeta-1.4)
          Length = 273

 Score = 40.4 bits (93), Expect = 0.002
 Identities = 17/28 (60%), Positives = 22/28 (78%)
 Frame = -3

Query: 455 DSGKKLVANNVIPANWRPNTDYRSFVQF 372
           +SGK +VA+NVIPANW+P   Y+S V F
Sbjct: 246 ESGKTVVASNVIPANWQPGAIYKSNVNF 273



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>MPAC1_CYNDA (O04701) Major pollen allergen Cyn d 1|
          Length = 246

 Score = 40.4 bits (93), Expect = 0.002
 Identities = 17/31 (54%), Positives = 24/31 (77%)
 Frame = -3

Query: 464 ITSDSGKKLVANNVIPANWRPNTDYRSFVQF 372
           +TS+ G  LV ++VIPANW+P+T Y S +QF
Sbjct: 214 LTSEGGAHLVQDDVIPANWKPDTVYTSKLQF 244



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>EXPB5_ARATH (Q9M203) Putative beta-expansin 5 precursor (AtEXPB5) (At-EXPB5)|
           (Ath-ExpBeta-1.3)
          Length = 264

 Score = 33.5 bits (75), Expect = 0.28
 Identities = 14/27 (51%), Positives = 16/27 (59%)
 Frame = -3

Query: 452 SGKKLVANNVIPANWRPNTDYRSFVQF 372
           SGKK++A  VIP  W P   Y S V F
Sbjct: 231 SGKKIIAKGVIPEKWSPGAIYHSKVNF 257



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>EXPB3_ARATH (Q9M0I2) Beta-expansin 3 precursor (AtEXPB3) (At-EXPB3)|
           (Ath-ExpBeta-1.6)
          Length = 264

 Score = 33.1 bits (74), Expect = 0.36
 Identities = 14/31 (45%), Positives = 18/31 (58%)
 Frame = -3

Query: 461 TSDSGKKLVANNVIPANWRPNTDYRSFVQFS 369
           T  +GK L A +V+P NW P   Y S + FS
Sbjct: 231 TLSAGKTLSATDVVPRNWAPKATYSSRLNFS 261



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>NPYR_DROME (P25931) Neuropeptide Y receptor (NPY-R) (PR4 receptor)|
          Length = 464

 Score = 32.0 bits (71), Expect = 0.81
 Identities = 20/51 (39%), Positives = 26/51 (50%), Gaps = 9/51 (17%)
 Frame = -1

Query: 127 WF---ACALP-PTDSVYGVPCITWH-----YLCVTKIPNQSYKLYYTYSLF 2
           WF   A ALP P  S   +P   WH     Y+C    P+++ + YYT SLF
Sbjct: 229 WFIALATALPIPIVSGLDIPMSPWHTKCEKYICREMWPSRTQEYYYTLSLF 279



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>EXPB1_ARATH (Q9SKU2) Beta-expansin 1 precursor (AtEXPB1) (At-EXPB1)|
           (Ath-ExpBeta-1.5)
          Length = 271

 Score = 31.2 bits (69), Expect = 1.4
 Identities = 14/31 (45%), Positives = 18/31 (58%)
 Frame = -3

Query: 461 TSDSGKKLVANNVIPANWRPNTDYRSFVQFS 369
           T  + K L A +VIP+NW P   Y S + FS
Sbjct: 238 TLSNNKTLSATDVIPSNWVPKATYTSRLNFS 268



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>SUR2_CAEEL (Q10669) Protein sur-2|
          Length = 1587

 Score = 30.4 bits (67), Expect = 2.3
 Identities = 19/65 (29%), Positives = 31/65 (47%), Gaps = 14/65 (21%)
 Frame = -2

Query: 462  HQRLRQEAGGQQCHPGQLEAQHRLPLLRPVQLIGPDRPMS---------GHVRL-----H 325
            HQ ++Q++     HP Q + QH++P +   Q +GP  P +         GHV +     H
Sbjct: 1467 HQTIQQQSN----HPTQQQLQHQIPNMSMHQQMGPQYPGAVFHHPSGPVGHVPMQYGMGH 1522

Query: 324  HARMH 310
            H + H
Sbjct: 1523 HMQQH 1527



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>E78C_DROME (P45447) Ecdysone-induced protein 78C (DR-78)|
          Length = 866

 Score = 30.0 bits (66), Expect = 3.1
 Identities = 20/72 (27%), Positives = 30/72 (41%), Gaps = 6/72 (8%)
 Frame = -2

Query: 465 HHQRLRQEAGGQQCHPGQLEAQHRLPL------LRPVQLIGPDRPMSGHVRLHHARMHAC 304
           H  + +Q+   QQ HPGQ + Q    L      L  +  +    P S H     +   + 
Sbjct: 189 HTHQQQQQQQQQQQHPGQQQHQLNCTLSNGGGALYTISSVHQFGPASNHNTSSSSPSSSA 248

Query: 303 MRSGPSAGCSSS 268
             S P +GCSS+
Sbjct: 249 AHSSPDSGCSSA 260



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>MPAP1_PHLPR (P43213) Pollen allergen Phl p 1 precursor (Phl p I)|
          Length = 263

 Score = 28.9 bits (63), Expect = 6.8
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -3

Query: 461 TSDSGKKLVANNVIPANWRPNTDYRS 384
           T++ G K  A +VIP  W+ +T Y S
Sbjct: 237 TTEGGTKTEAEDVIPEGWKADTSYES 262



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>FADL_SHIFL (P59741) Long-chain fatty acid transport protein precursor (Outer|
           membrane fadL protein) (Outer membrane flp protein)
          Length = 448

 Score = 28.5 bits (62), Expect = 8.9
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -3

Query: 461 TSDSGKKLVANNVIPANWRPNTDY 390
           TS SG+ L A+N+ P  W PN  +
Sbjct: 88  TSPSGRSLKADNIAPTAWVPNMHF 111



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>FADL_ECOLI (P10384) Long-chain fatty acid transport protein precursor (Outer|
           membrane fadL protein) (Outer membrane flp protein)
          Length = 448

 Score = 28.5 bits (62), Expect = 8.9
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -3

Query: 461 TSDSGKKLVANNVIPANWRPNTDY 390
           TS SG+ L A+N+ P  W PN  +
Sbjct: 88  TSPSGRSLKADNIAPTAWVPNMHF 111



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>FADL_ECO57 (Q8XCN6) Long-chain fatty acid transport protein precursor (Outer|
           membrane fadL protein) (Outer membrane flp protein)
          Length = 448

 Score = 28.5 bits (62), Expect = 8.9
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -3

Query: 461 TSDSGKKLVANNVIPANWRPNTDY 390
           TS SG+ L A+N+ P  W PN  +
Sbjct: 88  TSPSGRSLKADNIAPTAWVPNMHF 111



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>NPY5R_HUMAN (Q15761) Neuropeptide Y receptor type 5 (NPY5-R) (NPY-Y5 receptor)|
           (Y5 receptor) (NPYY5)
          Length = 455

 Score = 28.5 bits (62), Expect = 8.9
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = -1

Query: 115 ALPPTDSVYGVPCITWHYLCVTKIPNQSYKLYYTYSL 5
           +L      +G   ++  YLCV   P+ SY++ +T SL
Sbjct: 189 SLVELQETFGSALLSSRYLCVESWPSDSYRIAFTISL 225


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 66,885,889
Number of Sequences: 219361
Number of extensions: 1305789
Number of successful extensions: 3743
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 3466
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3742
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 3026354448
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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