Clone Name | rbart16c11 |
---|---|
Clone Library Name | barley_pub |
>EXB1A_MAIZE (P58738) Beta-expansin 1a precursor (Pollen allergen Zea m 1) (Zea| m I) Length = 269 Score = 47.0 bits (110), Expect = 2e-05 Identities = 20/31 (64%), Positives = 26/31 (83%) Frame = -3 Query: 464 ITSDSGKKLVANNVIPANWRPNTDYRSFVQF 372 +TS+SGKK++A +VIPANWRP+ Y S VQF Sbjct: 238 LTSESGKKVIAKDVIPANWRPDAVYTSNVQF 268
>EXB1B_MAIZE (Q07154) Beta-expansin 1b (Pollen allergen Zea m 1) (Zea m I)| (Fragment) Length = 191 Score = 46.6 bits (109), Expect = 3e-05 Identities = 19/31 (61%), Positives = 26/31 (83%) Frame = -3 Query: 464 ITSDSGKKLVANNVIPANWRPNTDYRSFVQF 372 +TS+SGKK++A ++IPANWRP+ Y S VQF Sbjct: 160 LTSESGKKVIAKDIIPANWRPDAVYTSNVQF 190
>EXPB4_ARATH (Q9SHD1) Putative beta-expansin 4 precursor (AtEXPB4) (At-EXPB4)| (Ath-ExpBeta-1.1) Length = 259 Score = 40.4 bits (93), Expect = 0.002 Identities = 17/30 (56%), Positives = 22/30 (73%) Frame = -3 Query: 461 TSDSGKKLVANNVIPANWRPNTDYRSFVQF 372 + +S K +VA NVIPANW+P+ YRS V F Sbjct: 230 SGESHKVIVAYNVIPANWKPDESYRSIVNF 259
>EXPB2_ARATH (Q9SHY6) Putative beta-expansin 2 precursor (AtEXPB2) (At-EXPB2)| (Ath-ExpBeta-1.4) Length = 273 Score = 40.4 bits (93), Expect = 0.002 Identities = 17/28 (60%), Positives = 22/28 (78%) Frame = -3 Query: 455 DSGKKLVANNVIPANWRPNTDYRSFVQF 372 +SGK +VA+NVIPANW+P Y+S V F Sbjct: 246 ESGKTVVASNVIPANWQPGAIYKSNVNF 273
>MPAC1_CYNDA (O04701) Major pollen allergen Cyn d 1| Length = 246 Score = 40.4 bits (93), Expect = 0.002 Identities = 17/31 (54%), Positives = 24/31 (77%) Frame = -3 Query: 464 ITSDSGKKLVANNVIPANWRPNTDYRSFVQF 372 +TS+ G LV ++VIPANW+P+T Y S +QF Sbjct: 214 LTSEGGAHLVQDDVIPANWKPDTVYTSKLQF 244
>EXPB5_ARATH (Q9M203) Putative beta-expansin 5 precursor (AtEXPB5) (At-EXPB5)| (Ath-ExpBeta-1.3) Length = 264 Score = 33.5 bits (75), Expect = 0.28 Identities = 14/27 (51%), Positives = 16/27 (59%) Frame = -3 Query: 452 SGKKLVANNVIPANWRPNTDYRSFVQF 372 SGKK++A VIP W P Y S V F Sbjct: 231 SGKKIIAKGVIPEKWSPGAIYHSKVNF 257
>EXPB3_ARATH (Q9M0I2) Beta-expansin 3 precursor (AtEXPB3) (At-EXPB3)| (Ath-ExpBeta-1.6) Length = 264 Score = 33.1 bits (74), Expect = 0.36 Identities = 14/31 (45%), Positives = 18/31 (58%) Frame = -3 Query: 461 TSDSGKKLVANNVIPANWRPNTDYRSFVQFS 369 T +GK L A +V+P NW P Y S + FS Sbjct: 231 TLSAGKTLSATDVVPRNWAPKATYSSRLNFS 261
>NPYR_DROME (P25931) Neuropeptide Y receptor (NPY-R) (PR4 receptor)| Length = 464 Score = 32.0 bits (71), Expect = 0.81 Identities = 20/51 (39%), Positives = 26/51 (50%), Gaps = 9/51 (17%) Frame = -1 Query: 127 WF---ACALP-PTDSVYGVPCITWH-----YLCVTKIPNQSYKLYYTYSLF 2 WF A ALP P S +P WH Y+C P+++ + YYT SLF Sbjct: 229 WFIALATALPIPIVSGLDIPMSPWHTKCEKYICREMWPSRTQEYYYTLSLF 279
>EXPB1_ARATH (Q9SKU2) Beta-expansin 1 precursor (AtEXPB1) (At-EXPB1)| (Ath-ExpBeta-1.5) Length = 271 Score = 31.2 bits (69), Expect = 1.4 Identities = 14/31 (45%), Positives = 18/31 (58%) Frame = -3 Query: 461 TSDSGKKLVANNVIPANWRPNTDYRSFVQFS 369 T + K L A +VIP+NW P Y S + FS Sbjct: 238 TLSNNKTLSATDVIPSNWVPKATYTSRLNFS 268
>SUR2_CAEEL (Q10669) Protein sur-2| Length = 1587 Score = 30.4 bits (67), Expect = 2.3 Identities = 19/65 (29%), Positives = 31/65 (47%), Gaps = 14/65 (21%) Frame = -2 Query: 462 HQRLRQEAGGQQCHPGQLEAQHRLPLLRPVQLIGPDRPMS---------GHVRL-----H 325 HQ ++Q++ HP Q + QH++P + Q +GP P + GHV + H Sbjct: 1467 HQTIQQQSN----HPTQQQLQHQIPNMSMHQQMGPQYPGAVFHHPSGPVGHVPMQYGMGH 1522 Query: 324 HARMH 310 H + H Sbjct: 1523 HMQQH 1527
>E78C_DROME (P45447) Ecdysone-induced protein 78C (DR-78)| Length = 866 Score = 30.0 bits (66), Expect = 3.1 Identities = 20/72 (27%), Positives = 30/72 (41%), Gaps = 6/72 (8%) Frame = -2 Query: 465 HHQRLRQEAGGQQCHPGQLEAQHRLPL------LRPVQLIGPDRPMSGHVRLHHARMHAC 304 H + +Q+ QQ HPGQ + Q L L + + P S H + + Sbjct: 189 HTHQQQQQQQQQQQHPGQQQHQLNCTLSNGGGALYTISSVHQFGPASNHNTSSSSPSSSA 248 Query: 303 MRSGPSAGCSSS 268 S P +GCSS+ Sbjct: 249 AHSSPDSGCSSA 260
>MPAP1_PHLPR (P43213) Pollen allergen Phl p 1 precursor (Phl p I)| Length = 263 Score = 28.9 bits (63), Expect = 6.8 Identities = 11/26 (42%), Positives = 16/26 (61%) Frame = -3 Query: 461 TSDSGKKLVANNVIPANWRPNTDYRS 384 T++ G K A +VIP W+ +T Y S Sbjct: 237 TTEGGTKTEAEDVIPEGWKADTSYES 262
>FADL_SHIFL (P59741) Long-chain fatty acid transport protein precursor (Outer| membrane fadL protein) (Outer membrane flp protein) Length = 448 Score = 28.5 bits (62), Expect = 8.9 Identities = 11/24 (45%), Positives = 15/24 (62%) Frame = -3 Query: 461 TSDSGKKLVANNVIPANWRPNTDY 390 TS SG+ L A+N+ P W PN + Sbjct: 88 TSPSGRSLKADNIAPTAWVPNMHF 111
>FADL_ECOLI (P10384) Long-chain fatty acid transport protein precursor (Outer| membrane fadL protein) (Outer membrane flp protein) Length = 448 Score = 28.5 bits (62), Expect = 8.9 Identities = 11/24 (45%), Positives = 15/24 (62%) Frame = -3 Query: 461 TSDSGKKLVANNVIPANWRPNTDY 390 TS SG+ L A+N+ P W PN + Sbjct: 88 TSPSGRSLKADNIAPTAWVPNMHF 111
>FADL_ECO57 (Q8XCN6) Long-chain fatty acid transport protein precursor (Outer| membrane fadL protein) (Outer membrane flp protein) Length = 448 Score = 28.5 bits (62), Expect = 8.9 Identities = 11/24 (45%), Positives = 15/24 (62%) Frame = -3 Query: 461 TSDSGKKLVANNVIPANWRPNTDY 390 TS SG+ L A+N+ P W PN + Sbjct: 88 TSPSGRSLKADNIAPTAWVPNMHF 111
>NPY5R_HUMAN (Q15761) Neuropeptide Y receptor type 5 (NPY5-R) (NPY-Y5 receptor)| (Y5 receptor) (NPYY5) Length = 455 Score = 28.5 bits (62), Expect = 8.9 Identities = 12/37 (32%), Positives = 20/37 (54%) Frame = -1 Query: 115 ALPPTDSVYGVPCITWHYLCVTKIPNQSYKLYYTYSL 5 +L +G ++ YLCV P+ SY++ +T SL Sbjct: 189 SLVELQETFGSALLSSRYLCVESWPSDSYRIAFTISL 225 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 66,885,889 Number of Sequences: 219361 Number of extensions: 1305789 Number of successful extensions: 3743 Number of sequences better than 10.0: 16 Number of HSP's better than 10.0 without gapping: 3466 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3742 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 3026354448 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)