>COPE_ARATH (O64748) Probable coatomer subunit epsilon (Epsilon-coat protein)|
           (Epsilon-COP)
          Length = 293

 Score =  115 bits (288), Expect = 5e-26
 Identities = 55/80 (68%), Positives = 64/80 (80%)
 Frame = -2

Query: 443 AVCCMHMGSFXXXXXXXXXXLNKDAKDPETLANLIVCNLHLGKPSSRYFSQLKLSHPDHV 264
           AVCCM MG+F          LNKDAKDPETLANL+VC+LH+GK SSR+ SQLKLSHP+H+
Sbjct: 214 AVCCMQMGNFDEAETLLLEALNKDAKDPETLANLVVCSLHVGKSSSRHLSQLKLSHPEHI 273

Query: 263 LVKTTTSAEDNFERALQAVA 204
           LVK  +SAEDNFERA+Q VA
Sbjct: 274 LVKRVSSAEDNFERAVQLVA 293

>COPE_HUMAN (O14579) Coatomer subunit epsilon (Epsilon-coat protein)|
           (Epsilon-COP)
          Length = 307

 Score = 57.4 bits (137), Expect = 2e-08
 Identities = 32/77 (41%), Positives = 44/77 (57%), Gaps = 3/77 (3%)
 Frame = -2

Query: 443 AVCCMHMGSFXXXXXXXXXXLNKDAKDPETLANLIVCNLHLGKP---SSRYFSQLKLSHP 273
           A C M  G +          L+KD+  PETL NLIV + HLGKP   ++RY SQLK +H 
Sbjct: 222 AACHMAQGRWEAAEGLLQEALDKDSGYPETLVNLIVLSQHLGKPPEVTNRYLSQLKDAHR 281

Query: 272 DHVLVKTTTSAEDNFER 222
            H  +K   + E++F+R
Sbjct: 282 SHPFIKEYQAKENDFDR 298

>COPE_BOVIN (Q28104) Coatomer subunit epsilon (Epsilon-coat protein)|
           (Epsilon-COP)
          Length = 307

 Score = 57.4 bits (137), Expect = 2e-08
 Identities = 31/77 (40%), Positives = 44/77 (57%), Gaps = 3/77 (3%)
 Frame = -2

Query: 443 AVCCMHMGSFXXXXXXXXXXLNKDAKDPETLANLIVCNLHLGKP---SSRYFSQLKLSHP 273
           A C M  G +          L+KD+  PETL NL+V + HLGKP   ++RY SQLK +H 
Sbjct: 222 AACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHR 281

Query: 272 DHVLVKTTTSAEDNFER 222
            H  +K   + E++F+R
Sbjct: 282 SHPFIKEYRAKENDFDR 298

>COPE_CRIGR (Q60445) Coatomer subunit epsilon (Epsilon-coat protein)|
           (Epsilon-COP) (LDLF)
          Length = 307

 Score = 55.5 bits (132), Expect = 6e-08
 Identities = 34/81 (41%), Positives = 46/81 (56%), Gaps = 4/81 (4%)
 Frame = -2

Query: 443 AVCCMHMGSFXXXXXXXXXXLNKDAKDPETLANLIVCNLHLGKP---SSRYFSQLKLSHP 273
           A C    G +          L+KD+  PETL NLIV + HLGKP   ++RY SQLK +H 
Sbjct: 222 AACHSAQGRWETAEGVLQEALDKDSGHPETLINLIVLSQHLGKPPEVTNRYLSQLKDAHR 281

Query: 272 DHVLVKTTTSAEDNFER-ALQ 213
            H  +K   + E++F+R ALQ
Sbjct: 282 THPFIKEYQAKENDFDRLALQ 302

>COPE_MOUSE (O89079) Coatomer subunit epsilon (Epsilon-coat protein)|
           (Epsilon-COP)
          Length = 307

 Score = 54.7 bits (130), Expect = 1e-07
 Identities = 31/77 (40%), Positives = 43/77 (55%), Gaps = 3/77 (3%)
 Frame = -2

Query: 443 AVCCMHMGSFXXXXXXXXXXLNKDAKDPETLANLIVCNLHLGKP---SSRYFSQLKLSHP 273
           A C    G +          L+KD+  PETL NLIV + HLGKP   ++RY SQLK +H 
Sbjct: 222 AACHSAQGRWETAEGVLQEALDKDSGHPETLINLIVLSQHLGKPPEVTNRYLSQLKDAHR 281

Query: 272 DHVLVKTTTSAEDNFER 222
            H  +K   + E++F+R
Sbjct: 282 AHPFIKEYQAKENDFDR 298

>BCR_HUMAN (P11274) Breakpoint cluster region protein (EC 2.7.11.1) (NY-REN-26|
           antigen)
          Length = 1271

 Score = 33.5 bits (75), Expect = 0.24
 Identities = 24/80 (30%), Positives = 27/80 (33%), Gaps = 10/80 (12%)
 Frame = -2

Query: 437 CCMHMGSFXXXXXXXXXXLNKDAKDPETLANLIVCNLHLGKPSSR----------YFSQL 288
           CC     F           NKDAKDP T  +L      L KP  R               
Sbjct: 608 CCQANAQFAEISENLRARSNKDAKDPTTKNSL---ETLLYKPVDRVTRSTLVLHDLLKHT 664

Query: 287 KLSHPDHVLVKTTTSAEDNF 228
             SHPDH L++       NF
Sbjct: 665 PASHPDHPLLQDALRISQNF 684

>COPE_CAEEL (O62246) Probable coatomer subunit epsilon (Epsilon-coat protein)|
           (Epsilon-COP)
          Length = 292

 Score = 30.0 bits (66), Expect = 2.7
 Identities = 20/55 (36%), Positives = 25/55 (45%), Gaps = 3/55 (5%)
 Frame = -2

Query: 377 KDAKDPETLANLIVCNLHLGKPSS---RYFSQLKLSHPDHVLVKTTTSAEDNFER 222
           +D KD + L N IV      K      R+ SQLK  HP+H  V      E  F+R
Sbjct: 231 RDNKDADVLINSIVSAQLNEKDDDVVERFISQLKHEHPNHPWVIDFNEKEAEFDR 285

>SECY_PYRSA (P38397) Preprotein translocase secY subunit (Fragment)|
          Length = 412

 Score = 29.3 bits (64), Expect = 4.5
 Identities = 13/39 (33%), Positives = 22/39 (56%)
 Frame = +1

Query: 118 TNTIHSVKALQNGTGEAQRANCNQARMFQATAWSALSKL 234
           T +I +++ LQ   GEA R   +Q   ++A  W+A+  L
Sbjct: 88  TTSIPNLEKLQKEEGEAGRQKISQITRYRALGWAAIQSL 126

>GH32_ARATH (Q9SZT9) Indole-3-acetic acid-amido synthetase GH3.2 (EC 6.3.2.-)|
           (Auxin-responsive GH3-like protein 2) (AtGH3-2)
           (YADOKARI 1 protein)
          Length = 549

 Score = 29.3 bits (64), Expect = 4.5
 Identities = 22/80 (27%), Positives = 39/80 (48%), Gaps = 7/80 (8%)
 Frame = +1

Query: 28  FYIYIRSYSGCFEYRVG---RPVCYH--IEQYK--AKTNTIHSVKALQNGTGEAQRANCN 186
           + + I +Y+G + YRVG   R   +H    Q+K   + N + SV++ +    E Q+A  N
Sbjct: 403 YELVITTYAGLYRYRVGDILRVTGFHNSAPQFKFIRRKNVLLSVESDKTDEAELQKAVEN 462

Query: 187 QARMFQATAWSALSKLSSAD 246
            +R+F       +   S A+
Sbjct: 463 ASRLFAEQGTRGIEYTSYAE 482

>DMDA_DROME (Q9VDW6) Dystrophin, isoforms A/C/DLP1/DLP3|
          Length = 3497

 Score = 28.5 bits (62), Expect = 7.7
 Identities = 15/27 (55%), Positives = 18/27 (66%), Gaps = 2/27 (7%)
 Frame = -2

Query: 287  KLSHPDHVLVKTTTSAED--NFERALQ 213
            KL+HP H    TTTS ED  +F RAL+
Sbjct: 3150 KLTHPMHEYCTTTTSTEDVRDFTRALK 3176

>YGY4_HALSQ (P21562) Hypothetical 80.2 kDa protein in the 5'region of gyrA and|
           gyrB (ORF 4)
          Length = 744

 Score = 28.5 bits (62), Expect = 7.7
 Identities = 18/61 (29%), Positives = 29/61 (47%)
 Frame = +3

Query: 150 KRNRGGSTR*LQSGKDVSGDSLERPFEVILRRRGGLN*HVIRVRQLQLAEVSGRRFAKVE 329
           +R   G  R   +G DV G+ + RP E++ R  G  +   +R+  +    V  RR   VE
Sbjct: 382 RRLEPGQMRAALAGVDVVGEGVNRPLELVGRLHGDFDLDALRLVVVVDDVVVERRLGLVE 441

Query: 330 I 332
           +
Sbjct: 442 V 442

>CLA4_ASHGO (Q9HFW2) Serine/threonine-protein kinase CLA4 (EC 2.7.11.1)|
          Length = 793

 Score = 28.5 bits (62), Expect = 7.7
 Identities = 14/45 (31%), Positives = 26/45 (57%)
 Frame = +1

Query: 292 WLKYRDDGLPRWRLHTIRLARVSGSFASLFRASSNRVSASSKLPI 426
           W+ Y+DDGL  + L   R   ++ ++ SL++  S R  A  ++P+
Sbjct: 62  WVSYKDDGLLSF-LWQKRYMVLNDNYLSLYKGDSGREDAVVQIPL 105

>DMDB_DROME (Q9VDW3) Dystrophin, isoform B|
          Length = 1669

 Score = 28.5 bits (62), Expect = 7.7
 Identities = 15/27 (55%), Positives = 18/27 (66%), Gaps = 2/27 (7%)
 Frame = -2

Query: 287  KLSHPDHVLVKTTTSAED--NFERALQ 213
            KL+HP H    TTTS ED  +F RAL+
Sbjct: 1322 KLTHPMHEYCTTTTSTEDVRDFTRALK 1348


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 64,970,094
Number of Sequences: 219361
Number of extensions: 1291848
Number of successful extensions: 3097
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 3014
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3092
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2618960580
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)