ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart16c06
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1DRE1B_ARATH (P93835) Dehydration-responsive element-binding prot... 32 0.93
2NRG2_HUMAN (O14511) Pro-neuregulin-2, membrane-bound isoform pre... 30 2.7
3NRG2_MOUSE (P56974) Pro-neuregulin-2, membrane-bound isoform pre... 29 4.6
4NRG1_RAT (P43322) Pro-neuregulin-1, membrane-bound isoform precu... 29 4.6
5NRG2_RAT (O35569) Pro-neuregulin-2, membrane-bound isoform precu... 29 4.6
6NRG1_HUMAN (Q02297) Pro-neuregulin-1, membrane-bound isoform pre... 29 6.0
7EF1D_PIMBR (P93447) Elongation factor 1-delta (EF-1-delta) (Elon... 28 7.9
8MRAW_FUSNN (Q8R6F5) S-adenosyl-methyltransferase mraW (EC 2.1.1.-) 28 7.9

>DRE1B_ARATH (P93835) Dehydration-responsive element-binding protein 1B (DREB1B|
           protein) (C-repeat-binding factor 1)
           (C-repeat/dehydration-responsive element-binding factor
           1) (CRT/DRE-binding factor 1)
          Length = 213

 Score = 31.6 bits (70), Expect = 0.93
 Identities = 17/31 (54%), Positives = 22/31 (70%)
 Frame = -3

Query: 446 QGMLIAPPPLVGPSATAGDGDDDGEVSLWSY 354
           +GML+ PPP V  +    DG+ DG+VSLWSY
Sbjct: 185 EGMLL-PPPSVQWNHNY-DGEGDGDVSLWSY 213



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>NRG2_HUMAN (O14511) Pro-neuregulin-2, membrane-bound isoform precursor|
           (Pro-NRG2) [Contains: Neuregulin-2 (NRG-2) (Neural- and
           thymus-derived activator for ERBB kinases) (NTAK)
           (Divergent of neuregulin-1) (DON-1)]
          Length = 850

 Score = 30.0 bits (66), Expect = 2.7
 Identities = 15/38 (39%), Positives = 21/38 (55%)
 Frame = -2

Query: 279 RVEEVYCMVALSFSPLCSKLLWVMYVCSLMNCDQKKQR 166
           + EE+Y    L+ + +C  LL V  VC +  C  KKQR
Sbjct: 397 KAEELYQKRVLTITGICVALLVVGIVCVVAYCKTKKQR 434



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>NRG2_MOUSE (P56974) Pro-neuregulin-2, membrane-bound isoform precursor|
           (Pro-NRG2) [Contains: Neuregulin-2 (NRG-2) (Divergent of
           neuregulin 1) (DON-1)]
          Length = 756

 Score = 29.3 bits (64), Expect = 4.6
 Identities = 15/36 (41%), Positives = 20/36 (55%)
 Frame = -2

Query: 273 EEVYCMVALSFSPLCSKLLWVMYVCSLMNCDQKKQR 166
           EE+Y    L+ + +C  LL V  VC +  C  KKQR
Sbjct: 309 EELYQKRVLTITGICVALLVVGIVCVVAYCKTKKQR 344



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>NRG1_RAT (P43322) Pro-neuregulin-1, membrane-bound isoform precursor|
           (Pro-NRG1) [Contains: Neuregulin-1 (Neu differentiation
           factor) (Heregulin) (HRG) (Acetylcholine
           receptor-inducing activity) (ARIA) (Sensory and motor
           neuron-derived factor) (Glial grow
          Length = 662

 Score = 29.3 bits (64), Expect = 4.6
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = -2

Query: 282 NRVEEVYCMVALSFSPLCSKLLWVMYVCSLMNCDQKKQR 166
           ++ EE+Y    L+ + +C  LL V  +C +  C  KKQR
Sbjct: 256 SKAEELYQKRVLTITGICIALLVVGIMCVVAYCKTKKQR 294



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>NRG2_RAT (O35569) Pro-neuregulin-2, membrane-bound isoform precursor|
           (Pro-NRG2) [Contains: Neuregulin-2 (NRG-2) (Neural- and
           thymus-derived activator for ERBB kinases) (NTAK)]
          Length = 868

 Score = 29.3 bits (64), Expect = 4.6
 Identities = 15/36 (41%), Positives = 20/36 (55%)
 Frame = -2

Query: 273 EEVYCMVALSFSPLCSKLLWVMYVCSLMNCDQKKQR 166
           EE+Y    L+ + +C  LL V  VC +  C  KKQR
Sbjct: 423 EELYQKRVLTITGICVALLVVGIVCVVAYCKTKKQR 458



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>NRG1_HUMAN (Q02297) Pro-neuregulin-1, membrane-bound isoform precursor|
           (Pro-NRG1) [Contains: Neuregulin-1 (Neu differentiation
           factor) (Heregulin) (HRG) (Breast cancer cell
           differentiation factor p45) (Acetylcholine
           receptor-inducing activity) (ARIA) (Se
          Length = 639

 Score = 28.9 bits (63), Expect = 6.0
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = -2

Query: 279 RVEEVYCMVALSFSPLCSKLLWVMYVCSLMNCDQKKQR 166
           + EE+Y    L+ + +C  LL V  +C +  C  KKQR
Sbjct: 233 KAEELYQKRVLTITGICIALLVVGIMCVVAYCKTKKQR 270



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>EF1D_PIMBR (P93447) Elongation factor 1-delta (EF-1-delta) (Elongation factor|
           1B-beta) (eEF-1B beta)
          Length = 225

 Score = 28.5 bits (62), Expect = 7.9
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = -3

Query: 446 QGMLIAPPPLVGPSATAGDGDDDGEVSLW 360
           +G  +A PP+    A+A + DDD +V L+
Sbjct: 79  EGSSVATPPVADTKASAAEDDDDDDVDLF 107



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>MRAW_FUSNN (Q8R6F5) S-adenosyl-methyltransferase mraW (EC 2.1.1.-)|
          Length = 314

 Score = 28.5 bits (62), Expect = 7.9
 Identities = 26/81 (32%), Positives = 36/81 (44%), Gaps = 5/81 (6%)
 Frame = +1

Query: 28  IIHPETYILLNQTPTKTFRSCIINKGDTYS*PQHSFGARTLHSRSGPLLLLIAVHQRAN- 204
           +++ ET   L   P  T+  C +  G       HS G     S  G   LLI++ Q  N 
Sbjct: 12  VLYYETLDNLVINPDGTYIDCTLGGGS------HSEGILERLSDKG---LLISIDQDTNA 62

Query: 205 VHYP----EKFRTKWRKGKGN 255
           + Y     EKF +KW+  KGN
Sbjct: 63  IEYSKKRLEKFGSKWKVFKGN 83


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 62,207,741
Number of Sequences: 219361
Number of extensions: 1144854
Number of successful extensions: 2613
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 2552
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2607
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2677159704
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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