ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart16c06 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AF418204.1| Hordeum vulgare subsp. vulgare CRT/DRE binding factor 1 (CBF1) mRNA, complete cds Length = 1010 Score = 767 bits (387), Expect = 0.0 Identities = 390/391 (99%) Strand = Plus / Minus Query: 58 aaccaaacaccgacgaagacattccgctcatgcataataaacaagggagatacatatagc 117 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct: 1010 aaccaaacaccgacgaagacactccgctcatgcataataaacaagggagatacatatagc 951 Query: 118 tagccccaacactccttcggagctcgaacactacactcaagatcaggccctctgcttctt 177 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 950 tagccccaacactccttcggagctcgaacactacactcaagatcaggccctctgcttctt 891 Query: 178 ctgatcgcagttcatcagagagcaaacgtacattacccagagaagtttagaacaaagtgg 237 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 890 ctgatcgcagttcatcagagagcaaacgtacattacccagagaagtttagaacaaagtgg 831 Query: 238 agaaaaggaaagggcaaccatgcagtacacttcctctactcgattactatataaagctgc 297 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 830 agaaaaggaaagggcaaccatgcagtacacttcctctactcgattactatataaagctgc 771 Query: 298 acatgcattagtagttcgtcgcaccacacatggcataactcaaatgcgcgtaatcagtag 357 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 770 acatgcattagtagttcgtcgcaccacacatggcataactcaaatgcgcgtaatcagtag 711 Query: 358 ctccacaagctgacctcaccgtcatcgtcgccgtctccggcagtcgctgacggacctacc 417 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 710 ctccacaagctgacctcaccgtcatcgtcgccgtctccggcagtcgctgacggacctacc 651 Query: 418 aacggaggaggggcaatgagcatcccctgcg 448 ||||||||||||||||||||||||||||||| Sbjct: 650 aacggaggaggggcaatgagcatcccctgcg 620
>gb|AY785839.1| Hordeum vulgare subsp. vulgare cultivar 88Ab536 HvCBF1 (CBF1) gene, complete cds Length = 967 Score = 731 bits (369), Expect = 0.0 Identities = 369/369 (100%) Strand = Plus / Minus Query: 80 tccgctcatgcataataaacaagggagatacatatagctagccccaacactccttcggag 139 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 966 tccgctcatgcataataaacaagggagatacatatagctagccccaacactccttcggag 907 Query: 140 ctcgaacactacactcaagatcaggccctctgcttcttctgatcgcagttcatcagagag 199 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 906 ctcgaacactacactcaagatcaggccctctgcttcttctgatcgcagttcatcagagag 847 Query: 200 caaacgtacattacccagagaagtttagaacaaagtggagaaaaggaaagggcaaccatg 259 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 846 caaacgtacattacccagagaagtttagaacaaagtggagaaaaggaaagggcaaccatg 787 Query: 260 cagtacacttcctctactcgattactatataaagctgcacatgcattagtagttcgtcgc 319 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 786 cagtacacttcctctactcgattactatataaagctgcacatgcattagtagttcgtcgc 727 Query: 320 accacacatggcataactcaaatgcgcgtaatcagtagctccacaagctgacctcaccgt 379 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 726 accacacatggcataactcaaatgcgcgtaatcagtagctccacaagctgacctcaccgt 667 Query: 380 catcgtcgccgtctccggcagtcgctgacggacctaccaacggaggaggggcaatgagca 439 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 666 catcgtcgccgtctccggcagtcgctgacggacctaccaacggaggaggggcaatgagca 607 Query: 440 tcccctgcg 448 ||||||||| Sbjct: 606 tcccctgcg 598
>gb|AY785838.1| Hordeum vulgare subsp. vulgare cultivar Strider HvCBF1 (CBF1) gene, complete cds Length = 967 Score = 731 bits (369), Expect = 0.0 Identities = 369/369 (100%) Strand = Plus / Minus Query: 80 tccgctcatgcataataaacaagggagatacatatagctagccccaacactccttcggag 139 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 966 tccgctcatgcataataaacaagggagatacatatagctagccccaacactccttcggag 907 Query: 140 ctcgaacactacactcaagatcaggccctctgcttcttctgatcgcagttcatcagagag 199 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 906 ctcgaacactacactcaagatcaggccctctgcttcttctgatcgcagttcatcagagag 847 Query: 200 caaacgtacattacccagagaagtttagaacaaagtggagaaaaggaaagggcaaccatg 259 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 846 caaacgtacattacccagagaagtttagaacaaagtggagaaaaggaaagggcaaccatg 787 Query: 260 cagtacacttcctctactcgattactatataaagctgcacatgcattagtagttcgtcgc 319 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 786 cagtacacttcctctactcgattactatataaagctgcacatgcattagtagttcgtcgc 727 Query: 320 accacacatggcataactcaaatgcgcgtaatcagtagctccacaagctgacctcaccgt 379 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 726 accacacatggcataactcaaatgcgcgtaatcagtagctccacaagctgacctcaccgt 667 Query: 380 catcgtcgccgtctccggcagtcgctgacggacctaccaacggaggaggggcaatgagca 439 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 666 catcgtcgccgtctccggcagtcgctgacggacctaccaacggaggaggggcaatgagca 607 Query: 440 tcccctgcg 448 ||||||||| Sbjct: 606 tcccctgcg 598
>gb|AY785836.1| Hordeum vulgare subsp. vulgare cultivar Morex HvCBF1 (CBF1) gene, complete cds Length = 967 Score = 731 bits (369), Expect = 0.0 Identities = 369/369 (100%) Strand = Plus / Minus Query: 80 tccgctcatgcataataaacaagggagatacatatagctagccccaacactccttcggag 139 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 966 tccgctcatgcataataaacaagggagatacatatagctagccccaacactccttcggag 907 Query: 140 ctcgaacactacactcaagatcaggccctctgcttcttctgatcgcagttcatcagagag 199 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 906 ctcgaacactacactcaagatcaggccctctgcttcttctgatcgcagttcatcagagag 847 Query: 200 caaacgtacattacccagagaagtttagaacaaagtggagaaaaggaaagggcaaccatg 259 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 846 caaacgtacattacccagagaagtttagaacaaagtggagaaaaggaaagggcaaccatg 787 Query: 260 cagtacacttcctctactcgattactatataaagctgcacatgcattagtagttcgtcgc 319 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 786 cagtacacttcctctactcgattactatataaagctgcacatgcattagtagttcgtcgc 727 Query: 320 accacacatggcataactcaaatgcgcgtaatcagtagctccacaagctgacctcaccgt 379 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 726 accacacatggcataactcaaatgcgcgtaatcagtagctccacaagctgacctcaccgt 667 Query: 380 catcgtcgccgtctccggcagtcgctgacggacctaccaacggaggaggggcaatgagca 439 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 666 catcgtcgccgtctccggcagtcgctgacggacctaccaacggaggaggggcaatgagca 607 Query: 440 tcccctgcg 448 ||||||||| Sbjct: 606 tcccctgcg 598
>gb|AY785837.1| Hordeum vulgare subsp. vulgare cultivar Dicktoo HvCBF1 (CBF1) gene, complete cds Length = 967 Score = 731 bits (369), Expect = 0.0 Identities = 369/369 (100%) Strand = Plus / Minus Query: 80 tccgctcatgcataataaacaagggagatacatatagctagccccaacactccttcggag 139 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 966 tccgctcatgcataataaacaagggagatacatatagctagccccaacactccttcggag 907 Query: 140 ctcgaacactacactcaagatcaggccctctgcttcttctgatcgcagttcatcagagag 199 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 906 ctcgaacactacactcaagatcaggccctctgcttcttctgatcgcagttcatcagagag 847 Query: 200 caaacgtacattacccagagaagtttagaacaaagtggagaaaaggaaagggcaaccatg 259 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 846 caaacgtacattacccagagaagtttagaacaaagtggagaaaaggaaagggcaaccatg 787 Query: 260 cagtacacttcctctactcgattactatataaagctgcacatgcattagtagttcgtcgc 319 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 786 cagtacacttcctctactcgattactatataaagctgcacatgcattagtagttcgtcgc 727 Query: 320 accacacatggcataactcaaatgcgcgtaatcagtagctccacaagctgacctcaccgt 379 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 726 accacacatggcataactcaaatgcgcgtaatcagtagctccacaagctgacctcaccgt 667 Query: 380 catcgtcgccgtctccggcagtcgctgacggacctaccaacggaggaggggcaatgagca 439 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 666 catcgtcgccgtctccggcagtcgctgacggacctaccaacggaggaggggcaatgagca 607 Query: 440 tcccctgcg 448 ||||||||| Sbjct: 606 tcccctgcg 598
>gb|AY785907.1| Hordeum vulgare subsp. vulgare cultivar Morex HvCBF1 (CBF1) mRNA, partial cds Length = 559 Score = 379 bits (191), Expect = e-102 Identities = 191/191 (100%) Strand = Plus / Minus Query: 258 tgcagtacacttcctctactcgattactatataaagctgcacatgcattagtagttcgtc 317 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 539 tgcagtacacttcctctactcgattactatataaagctgcacatgcattagtagttcgtc 480 Query: 318 gcaccacacatggcataactcaaatgcgcgtaatcagtagctccacaagctgacctcacc 377 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 479 gcaccacacatggcataactcaaatgcgcgtaatcagtagctccacaagctgacctcacc 420 Query: 378 gtcatcgtcgccgtctccggcagtcgctgacggacctaccaacggaggaggggcaatgag 437 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 419 gtcatcgtcgccgtctccggcagtcgctgacggacctaccaacggaggaggggcaatgag 360 Query: 438 catcccctgcg 448 ||||||||||| Sbjct: 359 catcccctgcg 349
>gb|AC165299.13| Mus musculus chromosome 15, clone RP23-266F2, complete sequence Length = 186266 Score = 44.1 bits (22), Expect = 0.39 Identities = 25/26 (96%) Strand = Plus / Minus Query: 39 agaaacttacattttgcttaaccaaa 64 |||||||||||| ||||||||||||| Sbjct: 76293 agaaacttacatgttgcttaaccaaa 76268
>gb|AC130830.3| Mus musculus BAC clone RP23-474G1 from chromosome 12, complete sequence Length = 199958 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 91 ataataaacaagggagataca 111 ||||||||||||||||||||| Sbjct: 115971 ataataaacaagggagataca 115951
>emb|X03467.1|FLMVEV5 Murray Valley Encephalitis virus genome 5' region (5.4 kb) with genes C-prM(M)-E-NS1-ns2a-ns2b-NS3 (N-term) Length = 5436 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 247 aagggcaaccatgcagtacac 267 ||||||||||||||||||||| Sbjct: 3041 aagggcaaccatgcagtacac 3061
>emb|AL606682.3|OSJN00085 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0065O17, complete sequence Length = 167269 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 374 caccgtcatcgtcgccgtctc 394 ||||||||||||||||||||| Sbjct: 115018 caccgtcatcgtcgccgtctc 115038
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 374 caccgtcatcgtcgccgtctc 394 ||||||||||||||||||||| Sbjct: 27952165 caccgtcatcgtcgccgtctc 27952185
>gb|AF161266.1|AF161266 Murray Valley encephalitis virus strain MVE-1-51, complete genome Length = 11014 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 247 aagggcaaccatgcagtacac 267 ||||||||||||||||||||| Sbjct: 3039 aagggcaaccatgcagtacac 3059
>gb|AC132132.4| Mus musculus BAC clone RP23-235K2 from 8, complete sequence Length = 198321 Score = 42.1 bits (21), Expect = 1.5 Identities = 27/29 (93%) Strand = Plus / Plus Query: 220 aagtttagaacaaagtggagaaaaggaaa 248 |||||||||||||||| ||||||||||| Sbjct: 91109 aagtttagaacaaagtcaagaaaaggaaa 91137
>gb|AC132578.3| Mus musculus BAC clone RP24-458M10 from 8, complete sequence Length = 147287 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 228 aacaaagtggagaaaaggaaa 248 ||||||||||||||||||||| Sbjct: 80894 aacaaagtggagaaaaggaaa 80914
>gb|AC124772.4| Mus musculus BAC clone RP23-47P3 from 12, complete sequence Length = 218340 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 91 ataataaacaagggagataca 111 ||||||||||||||||||||| Sbjct: 47452 ataataaacaagggagataca 47432
>gb|AC115061.20| Mus musculus chromosome 1, clone RP24-399G3, complete sequence Length = 203058 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 427 ggggcaatgagcatcccctg 446 |||||||||||||||||||| Sbjct: 102921 ggggcaatgagcatcccctg 102902
>emb|BX901917.9| Zebrafish DNA sequence from clone DKEY-32E10 in linkage group 5, complete sequence Length = 238589 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 45 ttacattttgcttaaccaaa 64 |||||||||||||||||||| Sbjct: 15634 ttacattttgcttaaccaaa 15653
>dbj|AK174019.1| Ciona intestinalis cDNA, clone:ciad018l23, full insert sequence Length = 4304 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 195 gagagcaaacgtacattacc 214 |||||||||||||||||||| Sbjct: 2023 gagagcaaacgtacattacc 2004 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,646,749 Number of Sequences: 3902068 Number of extensions: 3646749 Number of successful extensions: 81842 Number of sequences better than 10.0: 18 Number of HSP's better than 10.0 without gapping: 18 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 81789 Number of HSP's gapped (non-prelim): 53 length of query: 448 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 426 effective length of database: 17,147,199,772 effective search space: 7304707102872 effective search space used: 7304707102872 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
