ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart16c03 |
|---|---|
| Clone Library Name | barley_pub |
>NAGB_SALTI (Q8Z8G0) Glucosamine-6-phosphate deaminase (EC 3.5.99.6)| (Glucosamine-6-phosphate isomerase) (GNPDA) (GlcN6P deaminase) Length = 266 Score = 32.0 bits (71), Expect = 0.81 Identities = 29/112 (25%), Positives = 43/112 (38%), Gaps = 7/112 (6%) Frame = +2 Query: 2 GKHVRNHLFTKLLSLIPVDSRPWTQHLPTKQQALKQYKSQVELSFQLVSKADDKDLSDCE 181 GK H+ ++ + P RP+ LPT L YK+ VE+ KA + Sbjct: 13 GKWAARHIVNRINAFKPTTDRPFVLGLPTGGTPLTAYKALVEM-----HKAGEVSFKHVV 67 Query: 182 TV-------MQQQHPEHWRLDTFYFTRPLDHPCFPEPRKGQACGCASAPDAD 316 T + ++HPE + +F DH P G +APD D Sbjct: 68 TFNMDEYVGLPKEHPESYH--SFMHRNFFDHVDIPAENINLLNG--NAPDID 115
>NAGB_YERPE (Q8ZDE1) Glucosamine-6-phosphate deaminase (EC 3.5.99.6)| (Glucosamine-6-phosphate isomerase) (GNPDA) (GlcN6P deaminase) Length = 266 Score = 31.6 bits (70), Expect = 1.1 Identities = 29/111 (26%), Positives = 46/111 (41%), Gaps = 6/111 (5%) Frame = +2 Query: 2 GKHVRNHLFTKLLSLIPVDSRPWTQHLPTKQQALKQYKSQV------ELSFQLVSKADDK 163 GK H+ ++ + P RP+ LPT ++ YK + E+SF+ V + Sbjct: 13 GKWAARHIVNRINAFKPTAERPFILGLPTGGTPMEAYKYLIAMHKAGEVSFKHVVTFN-- 70 Query: 164 DLSDCETVMQQQHPEHWRLDTFYFTRPLDHPCFPEPRKGQACGCASAPDAD 316 D + ++HPE + TF T DH P G A+ DA+ Sbjct: 71 --MDEYVGLPKEHPESYY--TFMHTNFFDHVDIPAENINLLNGNAADIDAE 117
>NAGB_SALTY (Q8ZQX7) Glucosamine-6-phosphate deaminase (EC 3.5.99.6)| (Glucosamine-6-phosphate isomerase) (GNPDA) (GlcN6P deaminase) Length = 266 Score = 31.6 bits (70), Expect = 1.1 Identities = 29/112 (25%), Positives = 43/112 (38%), Gaps = 7/112 (6%) Frame = +2 Query: 2 GKHVRNHLFTKLLSLIPVDSRPWTQHLPTKQQALKQYKSQVELSFQLVSKADDKDLSDCE 181 GK H+ ++ + P RP+ LPT L YK+ VE+ KA + Sbjct: 13 GKWAARHIVNRINAFKPTADRPFVLGLPTGGTPLTAYKALVEM-----HKAGEVSFKHVV 67 Query: 182 TV-------MQQQHPEHWRLDTFYFTRPLDHPCFPEPRKGQACGCASAPDAD 316 T + ++HPE + +F DH P G +APD D Sbjct: 68 TFNMDEYVGLPKEHPESYH--SFMHRNFFDHVDIPAENINLLNG--NAPDID 115
>HYEP_HUMAN (P07099) Epoxide hydrolase 1 (EC 3.3.2.3) (Microsomal epoxide| hydrolase) (Epoxide hydratase) Length = 455 Score = 30.4 bits (67), Expect = 2.3 Identities = 13/28 (46%), Positives = 17/28 (60%) Frame = +2 Query: 179 ETVMQQQHPEHWRLDTFYFTRPLDHPCF 262 ET ++ H H R+D F FT PL+ CF Sbjct: 54 ETSDEEIHDLHQRIDKFRFTPPLEDSCF 81
>NAGB_SHIFL (P59688) Glucosamine-6-phosphate deaminase (EC 3.5.99.6)| (Glucosamine-6-phosphate isomerase) (GNPDA) (GlcN6P deaminase) Length = 266 Score = 30.0 bits (66), Expect = 3.1 Identities = 28/107 (26%), Positives = 44/107 (41%), Gaps = 2/107 (1%) Frame = +2 Query: 2 GKHVRNHLFTKLLSLIPVDSRPWTQHLPTKQQALKQYKSQVEL--SFQLVSKADDKDLSD 175 GK H+ ++ + P RP+ LPT + YK+ VE+ + Q+ K D Sbjct: 13 GKWAARHIVNRINAFKPTADRPFVLGLPTGGTPMTTYKALVEMHKAGQVSFKHVVTFNMD 72 Query: 176 CETVMQQQHPEHWRLDTFYFTRPLDHPCFPEPRKGQACGCASAPDAD 316 + ++HPE + +F DH P G +APD D Sbjct: 73 EYVGLPKEHPESYY--SFMHRNFFDHVDIPAENINLLNG--NAPDID 115
>NAGB_ECOLI (P0A759) Glucosamine-6-phosphate deaminase (EC 3.5.99.6)| (Glucosamine-6-phosphate isomerase) (GNPDA) (GlcN6P deaminase) Length = 266 Score = 30.0 bits (66), Expect = 3.1 Identities = 28/107 (26%), Positives = 44/107 (41%), Gaps = 2/107 (1%) Frame = +2 Query: 2 GKHVRNHLFTKLLSLIPVDSRPWTQHLPTKQQALKQYKSQVEL--SFQLVSKADDKDLSD 175 GK H+ ++ + P RP+ LPT + YK+ VE+ + Q+ K D Sbjct: 13 GKWAARHIVNRINAFKPTADRPFVLGLPTGGTPMTTYKALVEMHKAGQVSFKHVVTFNMD 72 Query: 176 CETVMQQQHPEHWRLDTFYFTRPLDHPCFPEPRKGQACGCASAPDAD 316 + ++HPE + +F DH P G +APD D Sbjct: 73 EYVGLPKEHPESYY--SFMHRNFFDHVDIPAENINLLNG--NAPDID 115
>NAGB_ECO57 (P0A760) Glucosamine-6-phosphate deaminase (EC 3.5.99.6)| (Glucosamine-6-phosphate isomerase) (GNPDA) (GlcN6P deaminase) Length = 266 Score = 30.0 bits (66), Expect = 3.1 Identities = 28/107 (26%), Positives = 44/107 (41%), Gaps = 2/107 (1%) Frame = +2 Query: 2 GKHVRNHLFTKLLSLIPVDSRPWTQHLPTKQQALKQYKSQVEL--SFQLVSKADDKDLSD 175 GK H+ ++ + P RP+ LPT + YK+ VE+ + Q+ K D Sbjct: 13 GKWAARHIVNRINAFKPTADRPFVLGLPTGGTPMTTYKALVEMHKAGQVSFKHVVTFNMD 72 Query: 176 CETVMQQQHPEHWRLDTFYFTRPLDHPCFPEPRKGQACGCASAPDAD 316 + ++HPE + +F DH P G +APD D Sbjct: 73 EYVGLPKEHPESYY--SFMHRNFFDHVDIPAENINLLNG--NAPDID 115
>PEX3_DEBHA (Q6BK00) Peroxisomal biogenesis factor 3 (Peroxin-3)| Length = 420 Score = 29.6 bits (65), Expect = 4.0 Identities = 23/82 (28%), Positives = 37/82 (45%), Gaps = 13/82 (15%) Frame = +2 Query: 14 RNHLFTKLLSLIPVDSRPWTQHLPTK--QQALKQYKSQVELSFQLVSKA----------- 154 +N + +L+L+PV ++P HLP + QALK K+ + Q +S + Sbjct: 65 QNDCYLTILALLPVLTQPIINHLPIELITQALKLKKTNSNPTPQEISDSLLTTDNLTMHQ 124 Query: 155 DDKDLSDCETVMQQQHPEHWRL 220 + D SD M E W+L Sbjct: 125 NTNDSSDLSHYMSLSKTELWKL 146
>NAS14_CAEEL (Q19269) Zinc metalloproteinase nas-14 precursor (EC 3.4.24.21)| (Nematode astacin 14) Length = 503 Score = 29.6 bits (65), Expect = 4.0 Identities = 16/51 (31%), Positives = 23/51 (45%) Frame = +3 Query: 54 STPDPGPNTFQPNNKHLNSTNHKLN*AFSWSPKLTIKISLIAKQ*CNSNTL 206 +TP P P + NK +ST + A S +PK T + K+ C L Sbjct: 424 TTPKPVPRNKEKENKSASSTTRGTSTATSTTPKTTTTTTSAPKEKCEDKNL 474
>KR511_HUMAN (Q6L8G4) Keratin-associated protein 5-11 (Keratin-associated| protein 5.11) (Ultrahigh sulfur keratin-associated protein 5.11) Length = 156 Score = 29.6 bits (65), Expect = 4.0 Identities = 17/47 (36%), Positives = 18/47 (38%) Frame = -2 Query: 210 CSGCCCCITVSQSERSLSSALETS*KLSSTCDLYCLSACCLVGRCWV 70 CS CCC QS SS + SS C C CC C V Sbjct: 106 CSKPCCC----QSSCCQSSCCKPCCCQSSCCQSSCFKPCCCQSSCCV 148
>ATPE_SHEON (Q8E8C1) ATP synthase epsilon chain (EC 3.6.3.14) (ATP synthase F1| sector epsilon subunit) Length = 142 Score = 29.6 bits (65), Expect = 4.0 Identities = 20/52 (38%), Positives = 27/52 (51%), Gaps = 10/52 (19%) Frame = -2 Query: 423 EVFYDPGELL----------AGLIKGPKEGDEEAALAGKLREAATVSASGAD 298 EVFY G LL A ++ K+ DE+AAL K R A ++ +GAD Sbjct: 62 EVFYLSGGLLEVQPSSVSVLADVVMRAKDIDEQAALEAKRRAEAHMATAGAD 113
>PROX1_CHICK (Q91018) Homeobox prospero-like protein PROX1 (PROX 1)| Length = 736 Score = 29.3 bits (64), Expect = 5.2 Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 1/36 (2%) Frame = +3 Query: 63 DPGPNTFQPNNKHLNST-NHKLN*AFSWSPKLTIKI 167 D GPN+F P KHL T +LN A S +K+ Sbjct: 334 DQGPNSFHPEGKHLAETLKQELNTAMSQVVDTVVKV 369
>MURG_BORPE (Q7VUQ3) UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide)| pyrophosphoryl-undecaprenol N-acetylglucosamine transferase (EC 2.4.1.227) (Undecaprenyl-PP-MurNAc-pentapeptide-UDPGlcNAc GlcNAc transferase) Length = 357 Score = 28.9 bits (63), Expect = 6.8 Identities = 19/58 (32%), Positives = 25/58 (43%), Gaps = 6/58 (10%) Frame = +2 Query: 2 GKHVRNHLFTKLLSLIPVDSRPWT------QHLPTKQQALKQYKSQVELSFQLVSKAD 157 G H N + L+L+P +RP QHLP QQA Q Q + + AD Sbjct: 191 GAHALNTTVPQALALLPEQARPQVVHQAGEQHLPALQQAYAQAGVQADCRAFIDDMAD 248
>PRPX_HORVU (P16273) Pathogen-related protein| Length = 235 Score = 28.9 bits (63), Expect = 6.8 Identities = 18/53 (33%), Positives = 22/53 (41%) Frame = -2 Query: 462 VLKVDEQLRAEDVEVFYDPGELLAGLIKGPKEGDEEAALAGKLREAATVSASG 304 V VDE + E E FY+ G LA + P AA+ SASG Sbjct: 190 VFHVDEDTKVEKAEFFYERGNFLASFLTAP---------------AASASASG 227
>GLMU_SYNPX (Q7U7I0) Bifunctional protein glmU [Includes:| UDP-N-acetylglucosamine pyrophosphorylase (EC 2.7.7.23) (N-acetylglucosamine-1-phosphate uridyltransferase); Glucosamine-1-phosphate N-acetyltransferase (EC 2.3.1.157)] Length = 450 Score = 28.9 bits (63), Expect = 6.8 Identities = 11/28 (39%), Positives = 16/28 (57%) Frame = +2 Query: 161 KDLSDCETVMQQQHPEHWRLDTFYFTRP 244 K L+ CE V+QQ+ +HW + F P Sbjct: 227 KQLAQCEAVLQQRLRDHWMAEGVTFVDP 254
>PROX1_MOUSE (P48437) Homeobox prospero-like protein PROX1 (PROX 1)| Length = 737 Score = 28.9 bits (63), Expect = 6.8 Identities = 16/41 (39%), Positives = 20/41 (48%), Gaps = 1/41 (2%) Frame = +3 Query: 48 SRSTPDPGPNTFQPNNKHLNST-NHKLN*AFSWSPKLTIKI 167 S D GPN+ QP KHL T +LN A S +K+ Sbjct: 330 SNKERDHGPNSLQPEGKHLAETLKQELNTAMSQVVDTVVKV 370
>NAGB_ECOL6 (Q8FJX7) Glucosamine-6-phosphate deaminase (EC 3.5.99.6)| (Glucosamine-6-phosphate isomerase) (GNPDA) (GlcN6P deaminase) Length = 266 Score = 28.5 bits (62), Expect = 8.9 Identities = 13/43 (30%), Positives = 21/43 (48%) Frame = +2 Query: 2 GKHVRNHLFTKLLSLIPVDSRPWTQHLPTKQQALKQYKSQVEL 130 GK H+ ++ + P RP+ LPT + YK+ VE+ Sbjct: 13 GKWAARHIVNRINAFKPTADRPFVLGLPTGGTPMTTYKALVEM 55
>MURG_BORPA (Q7W4B4) UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide)| pyrophosphoryl-undecaprenol N-acetylglucosamine transferase (EC 2.4.1.227) (Undecaprenyl-PP-MurNAc-pentapeptide-UDPGlcNAc GlcNAc transferase) Length = 357 Score = 28.5 bits (62), Expect = 8.9 Identities = 17/48 (35%), Positives = 22/48 (45%), Gaps = 6/48 (12%) Frame = +2 Query: 2 GKHVRNHLFTKLLSLIPVDSRPWT------QHLPTKQQALKQYKSQVE 127 G H N + L+L+P +RP QHLP QQA Q Q + Sbjct: 191 GAHALNTTVPQALALLPEQARPQVVHQAGEQHLPALQQAYAQAGVQAD 238
>MURG_BORBR (Q7WFS2) UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide)| pyrophosphoryl-undecaprenol N-acetylglucosamine transferase (EC 2.4.1.227) (Undecaprenyl-PP-MurNAc-pentapeptide-UDPGlcNAc GlcNAc transferase) Length = 357 Score = 28.5 bits (62), Expect = 8.9 Identities = 17/48 (35%), Positives = 22/48 (45%), Gaps = 6/48 (12%) Frame = +2 Query: 2 GKHVRNHLFTKLLSLIPVDSRPWT------QHLPTKQQALKQYKSQVE 127 G H N + L+L+P +RP QHLP QQA Q Q + Sbjct: 191 GAHALNTTVPQALALLPEQARPQVVHQAGEQHLPALQQAYAQAGVQAD 238
>NAGB_BORBU (O30564) Glucosamine-6-phosphate deaminase (EC 3.5.99.6)| (Glucosamine-6-phosphate isomerase) (GNPDA) (GlcN6P deaminase) Length = 268 Score = 28.5 bits (62), Expect = 8.9 Identities = 13/43 (30%), Positives = 20/43 (46%) Frame = +2 Query: 5 KHVRNHLFTKLLSLIPVDSRPWTQHLPTKQQALKQYKSQVELS 133 K NH+ K+ P P+ LPT + YK+ +EL+ Sbjct: 14 KWAANHVAQKINEFSPTKENPFILGLPTGSSPIGMYKNLIELN 56
>KRA59_HUMAN (P26371) Keratin-associated protein 5-9 (Keratin-associated protein| 5.9) (Ultrahigh sulfur keratin-associated protein 5.9) (Keratin, cuticle, ultrahigh sulfur 1) (Keratin, ultra high-sulfur matrix protein A) (UHS keratin A) (UHS KerA) Length = 169 Score = 28.5 bits (62), Expect = 8.9 Identities = 18/56 (32%), Positives = 20/56 (35%), Gaps = 9/56 (16%) Frame = -2 Query: 210 CSGCCCCITVSQSERSLSSALETS*KL---------SSTCDLYCLSACCLVGRCWV 70 CS C CC S SS ++S SS C C CC RC V Sbjct: 106 CSQCSCCKPCCSSSGRGSSCCQSSCCKPCCSSSGCGSSCCQSSCCKPCCSQSRCCV 161
>PROX1_HUMAN (Q92786) Homeobox prospero-like protein PROX1 (PROX 1)| Length = 737 Score = 28.5 bits (62), Expect = 8.9 Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 1/36 (2%) Frame = +3 Query: 63 DPGPNTFQPNNKHLNST-NHKLN*AFSWSPKLTIKI 167 D GPN+ QP KHL T +LN A S +K+ Sbjct: 335 DHGPNSLQPEGKHLAETLKQELNTAMSQVVDTVVKV 370
>EXOC2_DROME (Q9VQQ9) Exocyst complex component 2 (Exocyst complex component| Sec5) Length = 894 Score = 28.5 bits (62), Expect = 8.9 Identities = 21/71 (29%), Positives = 32/71 (45%), Gaps = 3/71 (4%) Frame = +2 Query: 68 WTQHLPTKQQALKQYKSQVELSFQLVSKADDKDLSDCET---VMQQQHPEHWRLDTFYFT 238 WT Q K +Q + + S+A ++ ++ CE + Q P+ WRL YFT Sbjct: 389 WTFRQTFDQHTSKDSGAQEKAKNRDSSQAPNR-VNFCEELCDIAASQLPDLWRLGQLYFT 447 Query: 239 RPLDHPCFPEP 271 L P P+P Sbjct: 448 GELRGPHDPKP 458 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 55,608,881 Number of Sequences: 219361 Number of extensions: 1073793 Number of successful extensions: 4148 Number of sequences better than 10.0: 23 Number of HSP's better than 10.0 without gapping: 3986 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4138 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 3026354448 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
