ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart16c03
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|NM_191889.1| Oryza sativa (japonica cultivar-group), predic... 107 3e-20
2dbj|AK109409.2| Oryza sativa (japonica cultivar-group) cDNA clon... 107 3e-20
3dbj|AK106037.1| Oryza sativa (japonica cultivar-group) cDNA clon... 107 3e-20
4dbj|AK061471.1| Oryza sativa (japonica cultivar-group) cDNA clon... 107 3e-20
5ref|NM_191890.1| Oryza sativa (japonica cultivar-group), predic... 105 1e-19
6dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 94 5e-16
7dbj|AP003142.2| Oryza sativa (japonica cultivar-group) genomic D... 94 5e-16
8dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 46 0.10
9dbj|AP005633.3| Oryza sativa (japonica cultivar-group) genomic D... 46 0.10
10dbj|AP005392.3| Oryza sativa (japonica cultivar-group) genomic D... 46 0.10
11dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome 46 0.10
12gb|AC161342.10| Mus musculus chromosome 1, clone RP23-313K17, co... 42 1.6
13gb|CP000010.1| Burkholderia mallei ATCC 23344 chromosome 1, comp... 42 1.6
14gb|AC147460.1| Oryza sativa (japonica cultivar-group) chromosome... 42 1.6
15gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, com... 42 1.6
16ref|XM_976988.1| PREDICTED: Mus musculus hypothetical LOC631657 ... 42 1.6
17ref|XM_919420.2| PREDICTED: Mus musculus hypothetical LOC631657 ... 42 1.6
18gb|AC121830.3| Mus musculus BAC clone RP24-63N24 from chromosome... 42 1.6
19gb|AC107707.10| Mus musculus chromosome 1, clone RP24-268C13, co... 42 1.6
20gb|AC123524.2| Oryza sativa (japonica cultivar-group) chromosome... 42 1.6
21emb|X70708.1|TTLYSS T.thermophilus gene for lysyl-tRNA synthetase 42 1.6
22emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromos... 42 1.6
23dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.6
24dbj|AP008226.1| Thermus thermophilus HB8 genomic DNA, complete g... 42 1.6
25dbj|AK069168.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 1.6
26gb|AC147513.16| Mus musculus chromosome 1, clone RP23-105K16, co... 42 1.6
27gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 42 1.6
28gb|AE017221.1| Thermus thermophilus HB27, complete genome 42 1.6
29gb|CP000081.1| Leishmania major chromosome 35, complete sequence 40 6.3
30ref|XM_361692.1| Magnaporthe grisea 70-15 hypothetical protein (... 40 6.3
31ref|NM_024709.2| Homo sapiens chromosome 1 open reading frame 11... 40 6.3
32ref|XM_838093.1| Leishmania major strain Friedlin rRNA dimethylt... 40 6.3
33ref|XM_802327.1| Trypanosoma cruzi strain CL Brener potassium vo... 40 6.3
34ref|XM_810399.1| Trypanosoma cruzi strain CL Brener potassium vo... 40 6.3
35emb|AL592406.4| Human DNA sequence from clone RP11-322F10 on chr... 40 6.3
36gb|CP000316.1| Polaromonas sp. JS666, complete genome 40 6.3
37emb|X79983.1|PRVIRDNA Pseudorabies Virus DNA 40 6.3
38emb|CR858045.1| Pongo pygmaeus mRNA; cDNA DKFZp469E2215 (from cl... 40 6.3
39emb|AL939127.1|SCO939127 Streptomyces coelicolor A3(2) complete ... 40 6.3
40gb|BC036067.1| Homo sapiens chromosome 1 open reading frame 115,... 40 6.3
41emb|AL596110.15| Mouse DNA sequence from clone RP23-330N10 on ch... 40 6.3
42dbj|AK125403.1| Homo sapiens cDNA FLJ43414 fis, clone OCBBF2024781 40 6.3
43dbj|AK091937.1| Homo sapiens cDNA FLJ34618 fis, clone KIDNE2014415 40 6.3
44dbj|AK056749.1| Homo sapiens cDNA FLJ32187 fis, clone PLACE6002016 40 6.3
45dbj|AK024208.1| Homo sapiens cDNA FLJ14146 fis, clone MAMMA1002947 40 6.3
46dbj|AB169850.1| Macaca fascicularis brain cDNA, clone: QtrA-1319... 40 6.3
47tpg|BK001744.1| TPA: TPA_exp: Suid herpesvirus 1, complete genome 40 6.3
48ref|XM_311349.2| Anopheles gambiae str. PEST ENSANGP00000001678 ... 40 6.3
49emb|AJ336503.1|HSA336503 Homo sapiens genomic sequence surroundi... 40 6.3
50emb|AJ336100.1|HSA336100 Homo sapiens genomic sequence surroundi... 40 6.3
51emb|AJ329421.1|HSA329421 Homo sapiens genomic sequence surroundi... 40 6.3
52emb|AJ331233.1|HSA331233 Homo sapiens genomic sequence surroundi... 40 6.3
53gb|AY108934.1| Zea mays PCO145446 mRNA sequence 40 6.3
54emb|X95710.1|MMULGENES Pseudorabies virus UL23, UL24, UL25, UL26... 40 6.3
55gb|DQ267826.1| Nocardia sp. C-14-1 catechol, 2-dioxygenase and p... 40 6.3
56emb|AL513354.14| Mouse DNA sequence from clone RP23-150J22 on ch... 40 6.3
57emb|AL356456.1|LMFLUNK01 Leishmania major Friedlin cosmid clones... 40 6.3 
>ref|NM_191889.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 801

 Score =  107 bits (54), Expect = 3e-20
 Identities = 81/90 (90%)
 Strand = Plus / Minus

                                                                       
Query: 377 cccttgataagccccgcgaggagctcccctgggtcgtagaacacctccacgtcctccgcc 436
           ||||||| ||| ||| | || ||||| |||||||||||| ||||||||||||||||||||
Sbjct: 656 cccttgagaaggccccccagtagctcgcctgggtcgtagtacacctccacgtcctccgcc 597

                                         
Query: 437 cgcagctgctcgtccaccttgagcacggcg 466
           ||||||||||| ||||||||||| ||||||
Sbjct: 596 cgcagctgctcatccaccttgaggacggcg 567



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 55/63 (87%)
 Strand = Plus / Minus

                                                                       
Query: 275 aaggggcaggcctgcggctgcgcgtcggcacctgacgccgacaccgtagccgcctcgcgg 334
           |||||||||||||||| ||||| | | || ||||||||||||||  |||||||||||| |
Sbjct: 773 aaggggcaggcctgcgactgcggggccgcgcctgacgccgacacgatagccgcctcgccg 714

              
Query: 335 agc 337
           |||
Sbjct: 713 agc 711
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>dbj|AK109409.2| Oryza sativa (japonica cultivar-group) cDNA clone:006-303-D12, full
           insert sequence
          Length = 1128

 Score =  107 bits (54), Expect = 3e-20
 Identities = 81/90 (90%)
 Strand = Plus / Minus

                                                                       
Query: 377 cccttgataagccccgcgaggagctcccctgggtcgtagaacacctccacgtcctccgcc 436
           ||||||| ||| ||| | || ||||| |||||||||||| ||||||||||||||||||||
Sbjct: 722 cccttgagaaggccccccagtagctcgcctgggtcgtagtacacctccacgtcctccgcc 663

                                         
Query: 437 cgcagctgctcgtccaccttgagcacggcg 466
           ||||||||||| ||||||||||| ||||||
Sbjct: 662 cgcagctgctcatccaccttgaggacggcg 633



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 55/63 (87%)
 Strand = Plus / Minus

                                                                       
Query: 275 aaggggcaggcctgcggctgcgcgtcggcacctgacgccgacaccgtagccgcctcgcgg 334
           |||||||||||||||| ||||| | | || ||||||||||||||  |||||||||||| |
Sbjct: 839 aaggggcaggcctgcgactgcggggccgcgcctgacgccgacacgatagccgcctcgccg 780

              
Query: 335 agc 337
           |||
Sbjct: 779 agc 777
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>dbj|AK106037.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-206-D09, full
           insert sequence
          Length = 1086

 Score =  107 bits (54), Expect = 3e-20
 Identities = 81/90 (90%)
 Strand = Plus / Minus

                                                                       
Query: 377 cccttgataagccccgcgaggagctcccctgggtcgtagaacacctccacgtcctccgcc 436
           ||||||| ||| ||| | || ||||| |||||||||||| ||||||||||||||||||||
Sbjct: 717 cccttgagaaggccccccagtagctcgcctgggtcgtagtacacctccacgtcctccgcc 658

                                         
Query: 437 cgcagctgctcgtccaccttgagcacggcg 466
           ||||||||||| ||||||||||| ||||||
Sbjct: 657 cgcagctgctcatccaccttgaggacggcg 628



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 55/63 (87%)
 Strand = Plus / Minus

                                                                       
Query: 275 aaggggcaggcctgcggctgcgcgtcggcacctgacgccgacaccgtagccgcctcgcgg 334
           |||||||||||||||| ||||| | | || ||||||||||||||  |||||||||||| |
Sbjct: 834 aaggggcaggcctgcgactgcggggccgcgcctgacgccgacacgatagccgcctcgccg 775

              
Query: 335 agc 337
           |||
Sbjct: 774 agc 772
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>dbj|AK061471.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-308-E01, full
           insert sequence
          Length = 1086

 Score =  107 bits (54), Expect = 3e-20
 Identities = 81/90 (90%)
 Strand = Plus / Minus

                                                                       
Query: 377 cccttgataagccccgcgaggagctcccctgggtcgtagaacacctccacgtcctccgcc 436
           ||||||| ||| ||| | || ||||| |||||||||||| ||||||||||||||||||||
Sbjct: 717 cccttgagaaggccccccagtagctcgcctgggtcgtagtacacctccacgtcctccgcc 658

                                         
Query: 437 cgcagctgctcgtccaccttgagcacggcg 466
           ||||||||||| ||||||||||| ||||||
Sbjct: 657 cgcagctgctcatccaccttgaggacggcg 628



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 55/63 (87%)
 Strand = Plus / Minus

                                                                       
Query: 275 aaggggcaggcctgcggctgcgcgtcggcacctgacgccgacaccgtagccgcctcgcgg 334
           |||||||||||||||| ||||| | | || ||||||||||||||  |||||||||||| |
Sbjct: 834 aaggggcaggcctgcgactgcggggccgcgcctgacgccgacacgatagccgcctcgccg 775

              
Query: 335 agc 337
           |||
Sbjct: 774 agc 772
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>ref|NM_191890.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 795

 Score =  105 bits (53), Expect = 1e-19
 Identities = 65/69 (94%)
 Strand = Plus / Minus

                                                                       
Query: 398 agctcccctgggtcgtagaacacctccacgtcctccgcccgcagctgctcgtccaccttg 457
           ||||| |||||||||||| ||||||||||||||||||||||||||||||| |||||||||
Sbjct: 629 agctcgcctgggtcgtagtacacctccacgtcctccgcccgcagctgctcatccaccttg 570

                    
Query: 458 agcacggcg 466
           || ||||||
Sbjct: 569 aggacggcg 561
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 93.7 bits (47), Expect = 5e-16
 Identities = 71/79 (89%)
 Strand = Plus / Plus

                                                                            
Query: 377      cccttgataagccccgcgaggagctcccctgggtcgtagaacacctccacgtcctccgcc 436
                ||||||| ||| ||| | || ||||| |||||||||||| ||||||||||||||||||||
Sbjct: 30505945 cccttgagaaggccccccagtagctcgcctgggtcgtagtacacctccacgtcctccgcc 30506004

                                   
Query: 437      cgcagctgctcgtccacct 455
                ||||||||||| |||||||
Sbjct: 30506005 cgcagctgctcatccacct 30506023



 Score = 91.7 bits (46), Expect = 2e-15
 Identities = 55/58 (94%)
 Strand = Plus / Plus

                                                                          
Query: 398      agctcccctgggtcgtagaacacctccacgtcctccgcccgcagctgctcgtccacct 455
                ||||| |||||||||||| ||||||||||||||||||||||||||||||| |||||||
Sbjct: 30514024 agctcgcctgggtcgtagtacacctccacgtcctccgcccgcagctgctcatccacct 30514081



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 55/63 (87%)
 Strand = Plus / Plus

                                                                            
Query: 275      aaggggcaggcctgcggctgcgcgtcggcacctgacgccgacaccgtagccgcctcgcgg 334
                |||||||||||||||| ||||| | | || ||||||||||||||  |||||||||||| |
Sbjct: 30505828 aaggggcaggcctgcgactgcggggccgcgcctgacgccgacacgatagccgcctcgccg 30505887

                   
Query: 335      agc 337
                |||
Sbjct: 30505888 agc 30505890
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>dbj|AP003142.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0435H01
          Length = 160141

 Score = 93.7 bits (47), Expect = 5e-16
 Identities = 71/79 (89%)
 Strand = Plus / Plus

                                                                          
Query: 377    cccttgataagccccgcgaggagctcccctgggtcgtagaacacctccacgtcctccgcc 436
              ||||||| ||| ||| | || ||||| |||||||||||| ||||||||||||||||||||
Sbjct: 134208 cccttgagaaggccccccagtagctcgcctgggtcgtagtacacctccacgtcctccgcc 134267

                                 
Query: 437    cgcagctgctcgtccacct 455
              ||||||||||| |||||||
Sbjct: 134268 cgcagctgctcatccacct 134286



 Score = 91.7 bits (46), Expect = 2e-15
 Identities = 55/58 (94%)
 Strand = Plus / Plus

                                                                        
Query: 398    agctcccctgggtcgtagaacacctccacgtcctccgcccgcagctgctcgtccacct 455
              ||||| |||||||||||| ||||||||||||||||||||||||||||||| |||||||
Sbjct: 142287 agctcgcctgggtcgtagtacacctccacgtcctccgcccgcagctgctcatccacct 142344



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 55/63 (87%)
 Strand = Plus / Plus

                                                                          
Query: 275    aaggggcaggcctgcggctgcgcgtcggcacctgacgccgacaccgtagccgcctcgcgg 334
              |||||||||||||||| ||||| | | || ||||||||||||||  |||||||||||| |
Sbjct: 134091 aaggggcaggcctgcgactgcggggccgcgcctgacgccgacacgatagccgcctcgccg 134150

                 
Query: 335    agc 337
              |||
Sbjct: 134151 agc 134153
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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score = 46.1 bits (23), Expect = 0.10
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                       
Query: 349      cgccgcctcctcgtccccctcct 371
                |||||||||||||||||||||||
Sbjct: 18372886 cgccgcctcctcgtccccctcct 18372864
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>dbj|AP005633.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
             clone:P0463G11
          Length = 154188

 Score = 46.1 bits (23), Expect = 0.10
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                    
Query: 349   cgccgcctcctcgtccccctcct 371
             |||||||||||||||||||||||
Sbjct: 87622 cgccgcctcctcgtccccctcct 87600
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>dbj|AP005392.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
             clone:P0463D04
          Length = 145828

 Score = 46.1 bits (23), Expect = 0.10
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                    
Query: 349   cgccgcctcctcgtccccctcct 371
             |||||||||||||||||||||||
Sbjct: 34760 cgccgcctcctcgtccccctcct 34738
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>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome
          Length = 6021225

 Score = 46.1 bits (23), Expect = 0.10
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                      
Query: 341     ccggcgagcgccgcctcctcgtc 363
               |||||||||||||||||||||||
Sbjct: 5614784 ccggcgagcgccgcctcctcgtc 5614762
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>gb|AC161342.10| Mus musculus chromosome 1, clone RP23-313K17, complete sequence
          Length = 181572

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 427   gtcctccgcccgcagctgctc 447
             |||||||||||||||||||||
Sbjct: 18113 gtcctccgcccgcagctgctc 18133
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>gb|CP000010.1| Burkholderia mallei ATCC 23344 chromosome 1, complete sequence
          Length = 3510148

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 283     ggcctgcggctgcgcgtcggc 303
               |||||||||||||||||||||
Sbjct: 2919771 ggcctgcggctgcgcgtcggc 2919791
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>gb|AC147460.1| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNAb0050G15, complete sequence
          Length = 126156

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 337   cttcccggcgagcgccgcctc 357
             |||||||||||||||||||||
Sbjct: 80201 cttcccggcgagcgccgcctc 80221
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>gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, complete sequence
          Length = 4126292

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 283     ggcctgcggctgcgcgtcggc 303
               |||||||||||||||||||||
Sbjct: 3961642 ggcctgcggctgcgcgtcggc 3961662
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>ref|XM_976988.1| PREDICTED: Mus musculus hypothetical LOC631657 (LOC631657), mRNA
          Length = 1068

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 427 gtcctccgcccgcagctgctc 447
           |||||||||||||||||||||
Sbjct: 685 gtcctccgcccgcagctgctc 665
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>ref|XM_919420.2| PREDICTED: Mus musculus hypothetical LOC631657 (LOC631657), mRNA
          Length = 1068

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 427 gtcctccgcccgcagctgctc 447
           |||||||||||||||||||||
Sbjct: 685 gtcctccgcccgcagctgctc 665
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>gb|AC121830.3| Mus musculus BAC clone RP24-63N24 from chromosome 7, complete sequence
          Length = 211478

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 131    agctttcagctggtctccaaa 151
              |||||||||||||||||||||
Sbjct: 144356 agctttcagctggtctccaaa 144336
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>gb|AC107707.10| Mus musculus chromosome 1, clone RP24-268C13, complete sequence
          Length = 178000

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 427    gtcctccgcccgcagctgctc 447
              |||||||||||||||||||||
Sbjct: 148558 gtcctccgcccgcagctgctc 148578
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>gb|AC123524.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBa0052C03, complete sequence
          Length = 157178

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 337   cttcccggcgagcgccgcctc 357
             |||||||||||||||||||||
Sbjct: 14045 cttcccggcgagcgccgcctc 14065
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>emb|X70708.1|TTLYSS T.thermophilus gene for lysyl-tRNA synthetase
          Length = 1738

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 353  gcctcctcgtccccctccttg 373
            |||||||||||||||||||||
Sbjct: 1424 gcctcctcgtccccctccttg 1404
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>emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromosome 1, complete sequence
          Length = 4074542

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 283     ggcctgcggctgcgcgtcggc 303
               |||||||||||||||||||||
Sbjct: 3703544 ggcctgcggctgcgcgtcggc 3703564
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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
               sequence
          Length = 28386948

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 337     cttcccggcgagcgccgcctc 357
               |||||||||||||||||||||
Sbjct: 6230767 cttcccggcgagcgccgcctc 6230787
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>dbj|AP008226.1| Thermus thermophilus HB8 genomic DNA, complete genome
          Length = 1849742

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 353    gcctcctcgtccccctccttg 373
              |||||||||||||||||||||
Sbjct: 988093 gcctcctcgtccccctccttg 988113



 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 351    ccgcctcctcgtccccctcct 371
              |||||||||||||||||||||
Sbjct: 630372 ccgcctcctcgtccccctcct 630352
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>dbj|AK069168.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023008P16, full
           insert sequence
          Length = 776

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 337 cttcccggcgagcgccgcctc 357
           |||||||||||||||||||||
Sbjct: 76  cttcccggcgagcgccgcctc 96
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>gb|AC147513.16| Mus musculus chromosome 1, clone RP23-105K16, complete sequence
          Length = 209834

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 427   gtcctccgcccgcagctgctc 447
             |||||||||||||||||||||
Sbjct: 57923 gtcctccgcccgcagctgctc 57943
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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 337     cttcccggcgagcgccgcctc 357
               |||||||||||||||||||||
Sbjct: 6297234 cttcccggcgagcgccgcctc 6297254
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>gb|AE017221.1| Thermus thermophilus HB27, complete genome
          Length = 1894877

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 353    gcctcctcgtccccctccttg 373
              |||||||||||||||||||||
Sbjct: 663093 gcctcctcgtccccctccttg 663113



 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 351    ccgcctcctcgtccccctcct 371
              |||||||||||||||||||||
Sbjct: 292533 ccgcctcctcgtccccctcct 292513
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>gb|CP000081.1| Leishmania major chromosome 35, complete sequence
          Length = 2090491

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 444    gctcgtccaccttgagcacg 463
              ||||||||||||||||||||
Sbjct: 358013 gctcgtccaccttgagcacg 357994
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>ref|XM_361692.1| Magnaporthe grisea 70-15 hypothetical protein (MG04166.4) partial
            mRNA
          Length = 1341

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 436  ccgcagctgctcgtccaccttgag 459
            |||||||||||||| |||||||||
Sbjct: 1104 ccgcagctgctcgtacaccttgag 1081
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>ref|NM_024709.2| Homo sapiens chromosome 1 open reading frame 115 (C1orf115), mRNA
          Length = 3007

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 350 gccgcctcctcgtccccctc 369
           ||||||||||||||||||||
Sbjct: 181 gccgcctcctcgtccccctc 162
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>ref|XM_838093.1| Leishmania major strain Friedlin rRNA dimethyltransferase
           (LMJ_1009) partial mRNA
          Length = 1395

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 444 gctcgtccaccttgagcacg 463
           ||||||||||||||||||||
Sbjct: 415 gctcgtccaccttgagcacg 396
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>ref|XM_802327.1| Trypanosoma cruzi strain CL Brener potassium voltage-gated channel
           (Tc00.1047053507213.30) partial mRNA
          Length = 894

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 430 ctccgcccgcagctgctcgt 449
           ||||||||||||||||||||
Sbjct: 234 ctccgcccgcagctgctcgt 215
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>ref|XM_810399.1| Trypanosoma cruzi strain CL Brener potassium voltage-gated channel
           (Tc00.1047053511301.140) partial mRNA
          Length = 894

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 430 ctccgcccgcagctgctcgt 449
           ||||||||||||||||||||
Sbjct: 234 ctccgcccgcagctgctcgt 215
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>emb|AL592406.4| Human DNA sequence from clone RP11-322F10 on chromosome 1 Contains the
             3' end of a histone deacetylase 1 (HDAC1) pseudogene, the
             3' end of the MARK1 gene for MAP/microtubule
             affinity-regulating kinase, a novel gene, a novel gene
             (FLJ14146) and a CpG island, complete sequence
          Length = 121601

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 350   gccgcctcctcgtccccctc 369
             ||||||||||||||||||||
Sbjct: 66445 gccgcctcctcgtccccctc 66426
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>gb|CP000316.1| Polaromonas sp. JS666, complete genome
          Length = 5200264

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 121     agttgaactgagctttcagc 140
               ||||||||||||||||||||
Sbjct: 1652648 agttgaactgagctttcagc 1652629
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>emb|X79983.1|PRVIRDNA Pseudorabies Virus DNA
          Length = 4093

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 436 ccgcagctgctcgtccacct 455
           ||||||||||||||||||||
Sbjct: 811 ccgcagctgctcgtccacct 792
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>emb|CR858045.1| Pongo pygmaeus mRNA; cDNA DKFZp469E2215 (from clone
          DKFZp469E2215)
          Length = 4716

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                              
Query: 55 cgactcccgaccctggaccc 74
          ||||||||||||||||||||
Sbjct: 30 cgactcccgaccctggaccc 11
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>emb|AL939127.1|SCO939127 Streptomyces coelicolor A3(2) complete genome; segment 24/29
          Length = 290850

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 342    cggcgagcgccgcctcctcg 361
              ||||||||||||||||||||
Sbjct: 241074 cggcgagcgccgcctcctcg 241055
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>gb|BC036067.1| Homo sapiens chromosome 1 open reading frame 115, mRNA (cDNA clone
           MGC:33695 IMAGE:5274863), complete cds
          Length = 3007

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 350 gccgcctcctcgtccccctc 369
           ||||||||||||||||||||
Sbjct: 181 gccgcctcctcgtccccctc 162
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>emb|AL596110.15| Mouse DNA sequence from clone RP23-330N10 on chromosome 11 Contains the
              3' end of a variant of the gene for a novel protein similar
              to human sperm antigen HCMOGT-1 (B230396K10Rik), the
              Adora2b gene for adenosine A2b receptor, the gene for a
              novel protein (2410012H22Rik), a somatic cytochrome c
              (Cycs) pseudogene, a novel gene, a novel pseudogene, the
              gene for a novel protein (2810460C24Rik), the 3' end of the
              Ncor1 gene for nuclear receptor co-repressor 1 and two CpG
              islands, complete sequence
          Length = 214834

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 207    aacactggagactcgacacg 226
              ||||||||||||||||||||
Sbjct: 123557 aacactggagactcgacacg 123576
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>dbj|AK125403.1| Homo sapiens cDNA FLJ43414 fis, clone OCBBF2024781
          Length = 3410

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 350 gccgcctcctcgtccccctc 369
           ||||||||||||||||||||
Sbjct: 656 gccgcctcctcgtccccctc 637
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>dbj|AK091937.1| Homo sapiens cDNA FLJ34618 fis, clone KIDNE2014415
          Length = 2900

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 350 gccgcctcctcgtccccctc 369
           ||||||||||||||||||||
Sbjct: 149 gccgcctcctcgtccccctc 130
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>dbj|AK056749.1| Homo sapiens cDNA FLJ32187 fis, clone PLACE6002016
          Length = 2832

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 350 gccgcctcctcgtccccctc 369
           ||||||||||||||||||||
Sbjct: 135 gccgcctcctcgtccccctc 116
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>dbj|AK024208.1| Homo sapiens cDNA FLJ14146 fis, clone MAMMA1002947
          Length = 2887

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 350 gccgcctcctcgtccccctc 369
           ||||||||||||||||||||
Sbjct: 136 gccgcctcctcgtccccctc 117
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>dbj|AB169850.1| Macaca fascicularis brain cDNA, clone: QtrA-13193, similar to human
            fatty acid 2-hydroxylase (FA2H), mRNA, RefSeq:
            NM_024306.2
          Length = 2453

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 103  taaacagtacaaatcacaag 122
            ||||||||||||||||||||
Sbjct: 2329 taaacagtacaaatcacaag 2310
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>tpg|BK001744.1| TPA: TPA_exp: Suid herpesvirus 1, complete genome
          Length = 143461

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 436   ccgcagctgctcgtccacct 455
             ||||||||||||||||||||
Sbjct: 58678 ccgcagctgctcgtccacct 58697
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>ref|XM_311349.2| Anopheles gambiae str. PEST ENSANGP00000001678 (ENSANGG00000001397),
            partial mRNA
          Length = 7146

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 429  cctccgcccgcagctgctcg 448
            ||||||||||||||||||||
Sbjct: 2899 cctccgcccgcagctgctcg 2880
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>emb|AJ336503.1|HSA336503 Homo sapiens genomic sequence surrounding NotI site, clone
           NR1-MA13R
          Length = 934

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 350 gccgcctcctcgtccccctc 369
           ||||||||||||||||||||
Sbjct: 4   gccgcctcctcgtccccctc 23
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>emb|AJ336100.1|HSA336100 Homo sapiens genomic sequence surrounding NotI site, clone
           NR3-BD17RS
          Length = 679

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 350 gccgcctcctcgtccccctc 369
           ||||||||||||||||||||
Sbjct: 4   gccgcctcctcgtccccctc 23
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>emb|AJ329421.1|HSA329421 Homo sapiens genomic sequence surrounding NotI site, clone
           NR1-DJ18R
          Length = 703

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 350 gccgcctcctcgtccccctc 369
           ||||||||||||||||||||
Sbjct: 4   gccgcctcctcgtccccctc 23
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>emb|AJ331233.1|HSA331233 Homo sapiens genomic sequence surrounding NotI site, clone
           NL3-CK20R
          Length = 776

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 350 gccgcctcctcgtccccctc 369
           ||||||||||||||||||||
Sbjct: 4   gccgcctcctcgtccccctc 23
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>gb|AY108934.1| Zea mays PCO145446 mRNA sequence
          Length = 867

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 348 gcgccgcctcctcgtccccctcct 371
           |||||||||||||||| |||||||
Sbjct: 106 gcgccgcctcctcgtcgccctcct 129
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>emb|X95710.1|MMULGENES Pseudorabies virus UL23, UL24, UL25, UL26, UL26.5, and UL44-gC genes
          Length = 4523

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 436  ccgcagctgctcgtccacct 455
            ||||||||||||||||||||
Sbjct: 3275 ccgcagctgctcgtccacct 3294
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>gb|DQ267826.1| Nocardia sp. C-14-1 catechol, 2-dioxygenase and phenol hydroxylase
            gene clusters, partial sequence
          Length = 5299

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 431  tccgcccgcagctgctcgtccacc 454
            |||||||||||||||||| |||||
Sbjct: 3694 tccgcccgcagctgctcgaccacc 3717
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>emb|AL513354.14| Mouse DNA sequence from clone RP23-150J22 on chromosome 15, complete
              sequence
          Length = 227073

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 85     aaccaaacaacaagcactta 104
              ||||||||||||||||||||
Sbjct: 161085 aaccaaacaacaagcactta 161104
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>emb|AL356456.1|LMFLUNK01 Leishmania major Friedlin cosmid clones L9127,L3286,L3175,L8286,L7480,
             incomplete shotgun, assembled reads, with VERY preliminary
             annotation, complete sequence
          Length = 139597

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 444   gctcgtccaccttgagcacg 463
             ||||||||||||||||||||
Sbjct: 35803 gctcgtccaccttgagcacg 35822


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,366,716
Number of Sequences: 3902068
Number of extensions: 3366716
Number of successful extensions: 74248
Number of sequences better than 10.0: 57
Number of HSP's better than 10.0 without gapping: 57
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 73448
Number of HSP's gapped (non-prelim): 800
length of query: 466
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 444
effective length of database: 17,147,199,772
effective search space: 7613356698768
effective search space used: 7613356698768
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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