ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart16b08
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1K6PF_DICDI (P90521) 6-phosphofructokinase (EC 2.7.1.11) (Phospho... 31 0.69
2YKT6_CAEEL (P34317) Hypothetical protein C07A9.6 precursor 30 1.2
3CRTB_SYNY3 (P37294) Phytoene synthase (EC 2.5.1.-) 30 2.0
4CDON_HUMAN (Q4KMG0) Cell adhesion molecule-related/down-regulate... 29 3.4
5LRTM1_MOUSE (Q8K377) Leucine-rich repeat transmembrane neuronal ... 29 3.4
6LRTM1_PONPY (Q5R6B1) Leucine-rich repeat transmembrane neuronal ... 28 4.5
7LRTM1_HUMAN (Q86UE6) Leucine-rich repeat transmembrane neuronal ... 28 4.5
8CYSK_WHEAT (P38076) Cysteine synthase (EC 2.5.1.47) (O-acetylser... 28 4.5
9ANLN_HUMAN (Q9NQW6) Actin-binding protein anillin 28 4.5
10ATPZ_STRLI (P0A303) ATP synthase protein I 28 7.7
11ATPZ_STRCO (P0A302) ATP synthase protein I 28 7.7

>K6PF_DICDI (P90521) 6-phosphofructokinase (EC 2.7.1.11) (Phosphofructokinase)|
           (Phosphohexokinase)
          Length = 834

 Score = 31.2 bits (69), Expect = 0.69
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = -3

Query: 291 RRPRAWWWSDPRDSSSAQSCFPKPNPS 211
           RRPR+ WW D  ++S   S FP  +PS
Sbjct: 764 RRPRSQWWMDLVETSQNISVFPLDDPS 790



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>YKT6_CAEEL (P34317) Hypothetical protein C07A9.6 precursor|
          Length = 507

 Score = 30.4 bits (67), Expect = 1.2
 Identities = 14/33 (42%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
 Frame = +3

Query: 30  WLTHGIQIYRADVIQIARRPTQS-IPHLLHKVG 125
           W+THG  IY    +Q+  R   S IPH L   G
Sbjct: 163 WITHGTSIYEFSAVQLGLRTIPSTIPHPLSSAG 195



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>CRTB_SYNY3 (P37294) Phytoene synthase (EC 2.5.1.-)|
          Length = 337

 Score = 29.6 bits (65), Expect = 2.0
 Identities = 15/35 (42%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
 Frame = -3

Query: 288 RPRAWWW-SDPRDSSSAQSCFPKPNPSVQRSPSTE 187
           +P++WW  S+PR S   Q   PKP+PS +   S E
Sbjct: 14  KPQSWWLTSEPRPSLMLQ--LPKPSPSAKPCASVE 46



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>CDON_HUMAN (Q4KMG0) Cell adhesion molecule-related/down-regulated by oncogenes|
            precursor
          Length = 1287

 Score = 28.9 bits (63), Expect = 3.4
 Identities = 17/52 (32%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
 Frame = -3

Query: 258  RDSSSAQSCFPKPNPSVQRSPSTEIKAFAVPASVGLTFKPL-QV*VPLCVAN 106
            R+  +   CF K N +   SP   +   A     GL  KPL  V VP+C+ +
Sbjct: 1112 RNCRNNNRCFTKTNSTFSSSPPPVVPVVAPYPQDGLEMKPLSHVKVPVCLTS 1163



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>LRTM1_MOUSE (Q8K377) Leucine-rich repeat transmembrane neuronal protein 1|
           precursor
          Length = 522

 Score = 28.9 bits (63), Expect = 3.4
 Identities = 14/27 (51%), Positives = 19/27 (70%)
 Frame = +2

Query: 23  CTLADTWNSNIQGRRNSNRQKANTEYS 103
           C LA +W SN QGR ++N Q A+ EY+
Sbjct: 323 CALA-SWLSNFQGRYDANLQCASPEYA 348



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>LRTM1_PONPY (Q5R6B1) Leucine-rich repeat transmembrane neuronal protein 1|
           precursor
          Length = 522

 Score = 28.5 bits (62), Expect = 4.5
 Identities = 14/27 (51%), Positives = 18/27 (66%)
 Frame = +2

Query: 23  CTLADTWNSNIQGRRNSNRQKANTEYS 103
           C LA +W SN QGR + N Q A+ EY+
Sbjct: 323 CALA-SWLSNFQGRYDGNLQCASPEYA 348



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>LRTM1_HUMAN (Q86UE6) Leucine-rich repeat transmembrane neuronal protein 1|
           precursor
          Length = 522

 Score = 28.5 bits (62), Expect = 4.5
 Identities = 14/27 (51%), Positives = 18/27 (66%)
 Frame = +2

Query: 23  CTLADTWNSNIQGRRNSNRQKANTEYS 103
           C LA +W SN QGR + N Q A+ EY+
Sbjct: 323 CALA-SWLSNFQGRYDGNLQCASPEYA 348



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>CYSK_WHEAT (P38076) Cysteine synthase (EC 2.5.1.47) (O-acetylserine|
           sulfhydrylase) (O-acetylserine (Thiol)-lyase) (CSase A)
           (OAS-TL A)
          Length = 325

 Score = 28.5 bits (62), Expect = 4.5
 Identities = 13/13 (100%), Positives = 13/13 (100%)
 Frame = -2

Query: 304 HSIKKEAESMVVE 266
           HSIKKEAESMVVE
Sbjct: 313 HSIKKEAESMVVE 325



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>ANLN_HUMAN (Q9NQW6) Actin-binding protein anillin|
          Length = 1124

 Score = 28.5 bits (62), Expect = 4.5
 Identities = 17/37 (45%), Positives = 25/37 (67%), Gaps = 2/37 (5%)
 Frame = -3

Query: 261 PRDSSSAQSCFPKP-NPSVQ-RSPSTEIKAFAVPASV 157
           P +S+SA+SC P P +P VQ ++  T   + AVPAS+
Sbjct: 87  PVESTSAKSCSPSPVSPQVQPQAADTISDSVAVPASL 123



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>ATPZ_STRLI (P0A303) ATP synthase protein I|
          Length = 144

 Score = 27.7 bits (60), Expect = 7.7
 Identities = 19/60 (31%), Positives = 29/60 (48%)
 Frame = +3

Query: 69  IQIARRPTQSIPHLLHKVGLKLARA*MSDQH*QGQQKLLFL*RGSFERRDLASENSFARS 248
           + + +R  +S+PHL   +GL L  A         Q  LLF+   +F+   L +  SFA S
Sbjct: 54  LYVLQRTAKSLPHLFQAMGLMLYAA---------QILLLFVFLAAFKNTTLFNPRSFAVS 104



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>ATPZ_STRCO (P0A302) ATP synthase protein I|
          Length = 144

 Score = 27.7 bits (60), Expect = 7.7
 Identities = 19/60 (31%), Positives = 29/60 (48%)
 Frame = +3

Query: 69  IQIARRPTQSIPHLLHKVGLKLARA*MSDQH*QGQQKLLFL*RGSFERRDLASENSFARS 248
           + + +R  +S+PHL   +GL L  A         Q  LLF+   +F+   L +  SFA S
Sbjct: 54  LYVLQRTAKSLPHLFQAMGLMLYAA---------QILLLFVFLAAFKNTTLFNPRSFAVS 104


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 43,684,221
Number of Sequences: 219361
Number of extensions: 817839
Number of successful extensions: 2593
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 2536
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2589
length of database: 80,573,946
effective HSP length: 77
effective length of database: 63,683,149
effective search space used: 1528395576
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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