ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart16b03
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1DEDD2_HUMAN (Q8WXF8) DNA-binding death effector domain-containin... 33 0.52
2IDD_HUMAN (P98153) Integral membrane protein DGCR2/IDD precursor 33 0.52
3K1849_HUMAN (Q96JH8) Protein KIAA1849 29 7.5
4VLPD_MYCHR (Q49536) Variant surface antigen D precursor (VLPD pr... 28 9.7
5HA22H_ARATH (Q8LEM6) HVA22-like protein h (AtHVA22h) 28 9.7

>DEDD2_HUMAN (Q8WXF8) DNA-binding death effector domain-containing protein 2|
           (FADD-like anti-apoptotic molecule 3) (DED-containing
           protein FLAME-3)
          Length = 326

 Score = 32.7 bits (73), Expect = 0.52
 Identities = 27/101 (26%), Positives = 38/101 (37%), Gaps = 6/101 (5%)
 Frame = -2

Query: 482 RLRPHHGALPFSCRQGARRGGEPRHELGRENTYRRSAGLCPRLRQSAGTAXXXXXXXXXX 303
           R+   H  LP   R+  R     R+  G  ++ +R+ G C R RQS+ +A          
Sbjct: 91  RVLARHDLLPHLARKRRRPVSPERYSYGTSSSSKRTEGSCRRRRQSSSSANSQQGQWETG 150

Query: 302 XXXXPADRQDR------ALRAPRGLPWRVRAAQEQYPDGEP 198
                  R+ R      A R  RG P    A Q+Q     P
Sbjct: 151 SPPTKRQRRSRGRPSGGARRRRRGAP---AAPQQQSEPARP 188



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>IDD_HUMAN (P98153) Integral membrane protein DGCR2/IDD precursor|
          Length = 550

 Score = 32.7 bits (73), Expect = 0.52
 Identities = 13/24 (54%), Positives = 15/24 (62%)
 Frame = -2

Query: 479 LRPHHGALPFSCRQGARRGGEPRH 408
           +RPHHG      RQG  RGG+P H
Sbjct: 73  VRPHHGKEAVDPRQGRARGGDPSH 96



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>K1849_HUMAN (Q96JH8) Protein KIAA1849|
          Length = 1073

 Score = 28.9 bits (63), Expect = 7.5
 Identities = 15/36 (41%), Positives = 21/36 (58%)
 Frame = +3

Query: 330 TSSPSRLTQTRTETSRAPISILPAKLMSRLPSSPCP 437
           +S P RL +T +ETS +P++ LPA      P  P P
Sbjct: 205 SSPPPRLRRTVSETSLSPVNALPAAAQG--PEEPGP 238



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>VLPD_MYCHR (Q49536) Variant surface antigen D precursor (VLPD prolipoprotein)|
          Length = 168

 Score = 28.5 bits (62), Expect = 9.7
 Identities = 18/61 (29%), Positives = 31/61 (50%)
 Frame = +1

Query: 67  QTSTTN*KQEN*TNPSNAMLLFRAGSNSTASSKEQASEQLTSLTGSPSGYCS*AARTRQG 246
           Q+ +T+  +E  ++ S +    +  S+ST++SKEQ S   TS +       S +    QG
Sbjct: 84  QSDSTSTSKEQGSSDSTSTSKEQGSSDSTSTSKEQGSSDSTSTSKEQGSSDSTSTSKEQG 143

Query: 247 S 249
           S
Sbjct: 144 S 144



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>HA22H_ARATH (Q8LEM6) HVA22-like protein h (AtHVA22h)|
          Length = 315

 Score = 28.5 bits (62), Expect = 9.7
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = +3

Query: 333 SSPSRLTQTRTETSRAPISILPAKLMSRLPSSPCP 437
           SSP +  Q +TET  A  S+   KL +  P  P P
Sbjct: 205 SSPRKQQQLQTETKEAKASVSQTKLTTLTPPGPPP 239


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 47,958,050
Number of Sequences: 219361
Number of extensions: 696389
Number of successful extensions: 2250
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2154
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2247
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3304846491
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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