ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart16b03
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|BT018331.1| Zea mays clone EL01T0402A02.c mRNA sequence 204 2e-49
2ref|NM_190926.1| Oryza sativa (japonica cultivar-group), predic... 139 9e-30
3dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 139 9e-30
4dbj|AP003293.5| Oryza sativa (japonica cultivar-group) genomic D... 139 9e-30
5dbj|AP003221.2| Oryza sativa (japonica cultivar-group) genomic D... 139 9e-30
6dbj|AK106023.1| Oryza sativa (japonica cultivar-group) cDNA clon... 139 9e-30
7dbj|AK100951.1| Oryza sativa (japonica cultivar-group) cDNA clon... 139 9e-30
8dbj|AK100942.1| Oryza sativa (japonica cultivar-group) cDNA clon... 139 9e-30
9dbj|AK072549.1| Oryza sativa (japonica cultivar-group) cDNA clon... 139 9e-30
10ref|XM_479703.1| Oryza sativa (japonica cultivar-group), mRNA 48 0.027
11dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 48 0.027
12dbj|AP004462.3| Oryza sativa (japonica cultivar-group) genomic D... 48 0.027
13dbj|AK065087.1| Oryza sativa (japonica cultivar-group) cDNA clon... 48 0.027
14dbj|AK062216.1| Oryza sativa (japonica cultivar-group) cDNA clon... 48 0.027
15gb|AC141643.4| Mus musculus BAC clone RP23-198F6 from chromosome... 46 0.11
16dbj|AP004258.3| Oryza sativa (japonica cultivar-group) genomic D... 44 0.42
17dbj|AP003298.3| Oryza sativa (japonica cultivar-group) genomic D... 44 0.42
18dbj|AP003277.2| Oryza sativa (japonica cultivar-group) genomic D... 44 0.42
19gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, com... 42 1.7
20emb|BX957273.10| Zebrafish DNA sequence from clone CH211-210P17 ... 42 1.7
21ref|NM_183999.1| Oryza sativa (japonica cultivar-group), predic... 40 6.5
22gb|AE014292.2| Brucella suis 1330 chromosome II, complete sequence 40 6.5
23gb|AY640177.1| Homo sapiens interleukin 12 receptor, beta 2 (IL1... 40 6.5
24gb|AC111128.24| Mus musculus chromosome 18, clone RP23-338I7, co... 40 6.5
25gb|AC116593.4| Mus musculus BAC clone RP24-91C7 from chromosome ... 40 6.5
26gb|AC133945.2| Mus musculus chromosome 18 clone RP24-146N1, comp... 40 6.5
27gb|AC147241.2| Mus musculus BAC clone RP23-417C21 from chromosom... 40 6.5
28emb|Z79639.1|CEF54E4 Caenorhabditis elegans Cosmid F54E4, comple... 40 6.5
29gb|AC124733.4| Mus musculus BAC clone RP23-306C18 from 12, compl... 40 6.5
30emb|AL389925.10| Human DNA sequence from clone RP11-131O15 on ch... 40 6.5
31emb|AL023875.2|HS1044O17 Human DNA sequence from clone RP5-1044O... 40 6.5
32emb|BX294116.3| Mouse DNA sequence from clone RP23-393O10 on chr... 40 6.5
33emb|AL807244.7| Zebrafish DNA sequence from clone CH211-215I13 i... 40 6.5
34gb|AC118658.4| Homo sapiens chromosome 15, clone RP11-35O15, com... 40 6.5
35emb|BX248241.20| Zebrafish DNA sequence from clone DKEY-22K18 in... 40 6.5
36emb|AJ421478.1| Mus musculus X-inactivation center region; segme... 40 6.5
37emb|BX537123.14| Zebrafish DNA sequence from clone CH211-202M24 ... 40 6.5
38gb|AC183287.1| Pan troglodytes chromosome X clone CH251-59K17 ma... 40 6.5
39dbj|AK035807.1| Mus musculus 16 days neonate cerebellum cDNA, RI... 40 6.5
40gb|AC034244.6| Homo sapiens chromosome 5 clone RP11-101B14, comp... 40 6.5
41gb|AE009723.1| Brucella melitensis 16M chromosome II, section 85... 40 6.5
42gb|AC158528.1| Mus musculus BAC clone RP23-259G7 from chromosome... 40 6.5
43gb|AE017224.1| Brucella abortus biovar 1 str. 9-941 chromosome I... 40 6.5
44dbj|AP003852.2| Oryza sativa (japonica cultivar-group) genomic D... 40 6.5
45gb|AC134244.4| Mus musculus BAC clone RP24-218O13 from 14, compl... 40 6.5
46emb|AM040265.1| Brucella melitensis biovar Abortus chromosome II... 40 6.5
47emb|AL929253.5| Mouse DNA sequence from clone RP23-350F14 on chr... 40 6.5
48emb|AL671187.9| Mouse DNA sequence from clone RP23-273N4 on chro... 40 6.5 
>gb|BT018331.1| Zea mays clone EL01T0402A02.c mRNA sequence
          Length = 937

 Score =  204 bits (103), Expect = 2e-49
 Identities = 151/167 (90%)
 Strand = Plus / Minus

                                                                       
Query: 192 tctcacaggttctccatctggatattgctcttgagcggcacgtactcgccaaggtagccc 251
           ||||| ||||||||||||||||||||||||||||| ||||||||||| |||||||| || 
Sbjct: 667 tctcaaaggttctccatctggatattgctcttgagtggcacgtactccccaaggtaccct 608

                                                                       
Query: 252 ccgaggtgctcgtagagcgcggtcctgtcgatctgctggttgtggtaggccttgcaggcg 311
           || |||||||| || | ||| |||| ||| ||||||||||||||| ||||||||||||||
Sbjct: 607 ccaaggtgctcatacaacgcagtccggtcaatctgctggttgtggaaggccttgcaggcg 548

                                                          
Query: 312 tagtagaagacgctctggacgagcagtcccagcagattgacgcagac 358
           ||||||||||||||||| |||||||||||||||| |||||| |||||
Sbjct: 547 tagtagaagacgctctgcacgagcagtcccagcaaattgacacagac 501
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>ref|NM_190926.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 990

 Score =  139 bits (70), Expect = 9e-30
 Identities = 151/178 (84%)
 Strand = Plus / Minus

                                                                       
Query: 198 aggttctccatctggatattgctcttgagcggcacgtactcgccaaggtagcccccgagg 257
           |||||||||||||| |||||||||||||| |||||||| || |||||||| || ||||| 
Sbjct: 980 aggttctccatctgaatattgctcttgagaggcacgtattcaccaaggtaccctccgaga 921

                                                                       
Query: 258 tgctcgtagagcgcggtcctgtcgatctgctggttgtggtaggccttgcaggcgtagtag 317
           ||||| || |  ||| | |  || ||||||||||||||| |||||||||| |||||||| 
Sbjct: 920 tgctcatacaatgcgcttcgatcaatctgctggttgtggaaggccttgcaagcgtagtaa 861

                                                                     
Query: 318 aagacgctctggacgagcagtcccagcagattgacgcagacgaggacagagaccagca 375
           || |||||||| ||||| || ||||||| |||||||||||| || ||||| |||||||
Sbjct: 860 aacacgctctgcacgagtagccccagcaaattgacgcagacaagaacagacaccagca 803
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score =  139 bits (70), Expect = 9e-30
 Identities = 151/178 (84%)
 Strand = Plus / Plus

                                                                            
Query: 198      aggttctccatctggatattgctcttgagcggcacgtactcgccaaggtagcccccgagg 257
                |||||||||||||| |||||||||||||| |||||||| || |||||||| || ||||| 
Sbjct: 33883604 aggttctccatctgaatattgctcttgagaggcacgtattcaccaaggtaccctccgaga 33883663

                                                                            
Query: 258      tgctcgtagagcgcggtcctgtcgatctgctggttgtggtaggccttgcaggcgtagtag 317
                ||||| || |  ||| | |  || ||||||||||||||| |||||||||| |||||||| 
Sbjct: 33883664 tgctcatacaatgcgcttcgatcaatctgctggttgtggaaggccttgcaagcgtagtaa 33883723

                                                                          
Query: 318      aagacgctctggacgagcagtcccagcagattgacgcagacgaggacagagaccagca 375
                || |||||||| ||||| || ||||||| |||||||||||| || ||||| |||||||
Sbjct: 33883724 aacacgctctgcacgagtagccccagcaaattgacgcagacaagaacagacaccagca 33883781



 Score = 44.1 bits (22), Expect = 0.42
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                      
Query: 86       agaaacaagaaaactaaacaaa 107
                ||||||||||||||||||||||
Sbjct: 42956426 agaaacaagaaaactaaacaaa 42956405



 Score = 44.1 bits (22), Expect = 0.42
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                      
Query: 86       agaaacaagaaaactaaacaaa 107
                ||||||||||||||||||||||
Sbjct: 20650442 agaaacaagaaaactaaacaaa 20650421



 Score = 40.1 bits (20), Expect = 6.5
 Identities = 35/40 (87%)
 Strand = Plus / Minus

                                                        
Query: 197      caggttctccatctggatattgctcttgagcggcacgtac 236
                |||||||||||||| |||| |||| | ||| |||||||||
Sbjct: 13827584 caggttctccatctcgatagtgctatcgagaggcacgtac 13827545
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>dbj|AP003293.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0691E06
          Length = 166497

 Score =  139 bits (70), Expect = 9e-30
 Identities = 151/178 (84%)
 Strand = Plus / Plus

                                                                          
Query: 198    aggttctccatctggatattgctcttgagcggcacgtactcgccaaggtagcccccgagg 257
              |||||||||||||| |||||||||||||| |||||||| || |||||||| || ||||| 
Sbjct: 122651 aggttctccatctgaatattgctcttgagaggcacgtattcaccaaggtaccctccgaga 122710

                                                                          
Query: 258    tgctcgtagagcgcggtcctgtcgatctgctggttgtggtaggccttgcaggcgtagtag 317
              ||||| || |  ||| | |  || ||||||||||||||| |||||||||| |||||||| 
Sbjct: 122711 tgctcatacaatgcgcttcgatcaatctgctggttgtggaaggccttgcaagcgtagtaa 122770

                                                                        
Query: 318    aagacgctctggacgagcagtcccagcagattgacgcagacgaggacagagaccagca 375
              || |||||||| ||||| || ||||||| |||||||||||| || ||||| |||||||
Sbjct: 122771 aacacgctctgcacgagtagccccagcaaattgacgcagacaagaacagacaccagca 122828
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>dbj|AP003221.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0003D09
          Length = 161970

 Score =  139 bits (70), Expect = 9e-30
 Identities = 151/178 (84%)
 Strand = Plus / Plus

                                                                         
Query: 198   aggttctccatctggatattgctcttgagcggcacgtactcgccaaggtagcccccgagg 257
             |||||||||||||| |||||||||||||| |||||||| || |||||||| || ||||| 
Sbjct: 15047 aggttctccatctgaatattgctcttgagaggcacgtattcaccaaggtaccctccgaga 15106

                                                                         
Query: 258   tgctcgtagagcgcggtcctgtcgatctgctggttgtggtaggccttgcaggcgtagtag 317
             ||||| || |  ||| | |  || ||||||||||||||| |||||||||| |||||||| 
Sbjct: 15107 tgctcatacaatgcgcttcgatcaatctgctggttgtggaaggccttgcaagcgtagtaa 15166

                                                                       
Query: 318   aagacgctctggacgagcagtcccagcagattgacgcagacgaggacagagaccagca 375
             || |||||||| ||||| || ||||||| |||||||||||| || ||||| |||||||
Sbjct: 15167 aacacgctctgcacgagtagccccagcaaattgacgcagacaagaacagacaccagca 15224
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>dbj|AK106023.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-206-C07, full
            insert sequence
          Length = 1365

 Score =  139 bits (70), Expect = 9e-30
 Identities = 151/178 (84%)
 Strand = Plus / Minus

                                                                        
Query: 198  aggttctccatctggatattgctcttgagcggcacgtactcgccaaggtagcccccgagg 257
            |||||||||||||| |||||||||||||| |||||||| || |||||||| || ||||| 
Sbjct: 1123 aggttctccatctgaatattgctcttgagaggcacgtattcaccaaggtaccctccgaga 1064

                                                                        
Query: 258  tgctcgtagagcgcggtcctgtcgatctgctggttgtggtaggccttgcaggcgtagtag 317
            ||||| || |  ||| | |  || ||||||||||||||| |||||||||| |||||||| 
Sbjct: 1063 tgctcatacaatgcgcttcgatcaatctgctggttgtggaaggccttgcaagcgtagtaa 1004

                                                                      
Query: 318  aagacgctctggacgagcagtcccagcagattgacgcagacgaggacagagaccagca 375
            || |||||||| ||||| || ||||||| |||||||||||| || ||||| |||||||
Sbjct: 1003 aacacgctctgcacgagtagccccagcaaattgacgcagacaagaacagacaccagca 946
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>dbj|AK100951.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023139J15, full
            insert sequence
          Length = 1630

 Score =  139 bits (70), Expect = 9e-30
 Identities = 151/178 (84%)
 Strand = Plus / Minus

                                                                        
Query: 198  aggttctccatctggatattgctcttgagcggcacgtactcgccaaggtagcccccgagg 257
            |||||||||||||| |||||||||||||| |||||||| || |||||||| || ||||| 
Sbjct: 1382 aggttctccatctgaatattgctcttgagaggcacgtattcaccaaggtaccctccgaga 1323

                                                                        
Query: 258  tgctcgtagagcgcggtcctgtcgatctgctggttgtggtaggccttgcaggcgtagtag 317
            ||||| || |  ||| | |  || ||||||||||||||| |||||||||| |||||||| 
Sbjct: 1322 tgctcatacaatgcgcttcgatcaatctgctggttgtggaaggccttgcaagcgtagtaa 1263

                                                                      
Query: 318  aagacgctctggacgagcagtcccagcagattgacgcagacgaggacagagaccagca 375
            || |||||||| ||||| || ||||||| |||||||||||| || ||||| |||||||
Sbjct: 1262 aacacgctctgcacgagtagccccagcaaattgacgcagacaagaacagacaccagca 1205
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>dbj|AK100942.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023138D05, full
            insert sequence
          Length = 1316

 Score =  139 bits (70), Expect = 9e-30
 Identities = 151/178 (84%)
 Strand = Plus / Minus

                                                                        
Query: 198  aggttctccatctggatattgctcttgagcggcacgtactcgccaaggtagcccccgagg 257
            |||||||||||||| |||||||||||||| |||||||| || |||||||| || ||||| 
Sbjct: 1073 aggttctccatctgaatattgctcttgagaggcacgtattcaccaaggtaccctccgaga 1014

                                                                        
Query: 258  tgctcgtagagcgcggtcctgtcgatctgctggttgtggtaggccttgcaggcgtagtag 317
            ||||| || |  ||| | |  || ||||||||||||||| |||||||||| |||||||| 
Sbjct: 1013 tgctcatacaatgcgcttcgatcaatctgctggttgtggaaggccttgcaagcgtagtaa 954

                                                                      
Query: 318  aagacgctctggacgagcagtcccagcagattgacgcagacgaggacagagaccagca 375
            || |||||||| ||||| || ||||||| |||||||||||| || ||||| |||||||
Sbjct: 953  aacacgctctgcacgagtagccccagcaaattgacgcagacaagaacagacaccagca 896
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>dbj|AK072549.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023127J16, full
            insert sequence
          Length = 1376

 Score =  139 bits (70), Expect = 9e-30
 Identities = 151/178 (84%)
 Strand = Plus / Minus

                                                                        
Query: 198  aggttctccatctggatattgctcttgagcggcacgtactcgccaaggtagcccccgagg 257
            |||||||||||||| |||||||||||||| |||||||| || |||||||| || ||||| 
Sbjct: 1128 aggttctccatctgaatattgctcttgagaggcacgtattcaccaaggtaccctccgaga 1069

                                                                        
Query: 258  tgctcgtagagcgcggtcctgtcgatctgctggttgtggtaggccttgcaggcgtagtag 317
            ||||| || |  ||| | |  || ||||||||||||||| |||||||||| |||||||| 
Sbjct: 1068 tgctcatacaatgcgcttcgatcaatctgctggttgtggaaggccttgcaagcgtagtaa 1009

                                                                      
Query: 318  aagacgctctggacgagcagtcccagcagattgacgcagacgaggacagagaccagca 375
            || |||||||| ||||| || ||||||| |||||||||||| || ||||| |||||||
Sbjct: 1008 aacacgctctgcacgagtagccccagcaaattgacgcagacaagaacagacaccagca 951
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>ref|XM_479703.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1677

 Score = 48.1 bits (24), Expect = 0.027
 Identities = 42/48 (87%)
 Strand = Plus / Minus

                                                            
Query: 221  cttgagcggcacgtactcgccaaggtagcccccgaggtgctcgtagag 268
            ||||||||| ||||||||||| |||||| || ||||||| ||| ||||
Sbjct: 1229 cttgagcgggacgtactcgccgaggtagacctcgaggtggtcggagag 1182
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8,
              complete sequence
          Length = 28434780

 Score = 48.1 bits (24), Expect = 0.027
 Identities = 42/48 (87%)
 Strand = Plus / Plus

                                                              
Query: 221    cttgagcggcacgtactcgccaaggtagcccccgaggtgctcgtagag 268
              ||||||||| ||||||||||| |||||| || ||||||| ||| ||||
Sbjct: 346236 cttgagcgggacgtactcgccgaggtagacctcgaggtggtcggagag 346283
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>dbj|AP004462.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
             clone:P0450B04
          Length = 153268

 Score = 48.1 bits (24), Expect = 0.027
 Identities = 42/48 (87%)
 Strand = Plus / Plus

                                                             
Query: 221   cttgagcggcacgtactcgccaaggtagcccccgaggtgctcgtagag 268
             ||||||||| ||||||||||| |||||| || ||||||| ||| ||||
Sbjct: 55750 cttgagcgggacgtactcgccgaggtagacctcgaggtggtcggagag 55797
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>dbj|AK065087.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001L19, full
            insert sequence
          Length = 1677

 Score = 48.1 bits (24), Expect = 0.027
 Identities = 42/48 (87%)
 Strand = Plus / Minus

                                                            
Query: 221  cttgagcggcacgtactcgccaaggtagcccccgaggtgctcgtagag 268
            ||||||||| ||||||||||| |||||| || ||||||| ||| ||||
Sbjct: 1229 cttgagcgggacgtactcgccgaggtagacctcgaggtggtcggagag 1182
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>dbj|AK062216.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-047-A10, full
           insert sequence
          Length = 1055

 Score = 48.1 bits (24), Expect = 0.027
 Identities = 42/48 (87%)
 Strand = Plus / Minus

                                                           
Query: 221 cttgagcggcacgtactcgccaaggtagcccccgaggtgctcgtagag 268
           ||||||||| ||||||||||| |||||| || ||||||| ||| ||||
Sbjct: 559 cttgagcgggacgtactcgccgaggtagacctcgaggtggtcggagag 512
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>gb|AC141643.4| Mus musculus BAC clone RP23-198F6 from chromosome 7, complete sequence
          Length = 237233

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                    
Query: 85    tagaaacaagaaaactaaacaaa 107
             |||||||||||||||||||||||
Sbjct: 65871 tagaaacaagaaaactaaacaaa 65849
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>dbj|AP004258.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
              clone:OSJNBa0024F24
          Length = 172642

 Score = 44.1 bits (22), Expect = 0.42
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 86     agaaacaagaaaactaaacaaa 107
              ||||||||||||||||||||||
Sbjct: 112418 agaaacaagaaaactaaacaaa 112397
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>dbj|AP003298.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0698H10
          Length = 153449

 Score = 44.1 bits (22), Expect = 0.42
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 86    agaaacaagaaaactaaacaaa 107
             ||||||||||||||||||||||
Sbjct: 57305 agaaacaagaaaactaaacaaa 57284
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>dbj|AP003277.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0518C01
          Length = 173555

 Score = 44.1 bits (22), Expect = 0.42
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 86     agaaacaagaaaactaaacaaa 107
              ||||||||||||||||||||||
Sbjct: 150160 agaaacaagaaaactaaacaaa 150139
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>gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, complete sequence
          Length = 4126292

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 255     aggtgctcgtagagcgcggtc 275
               |||||||||||||||||||||
Sbjct: 3077125 aggtgctcgtagagcgcggtc 3077145
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>emb|BX957273.10| Zebrafish DNA sequence from clone CH211-210P17 in linkage group 9,
              complete sequence
          Length = 150430

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 78     aacaaactagaaacaagaaaa 98
              |||||||||||||||||||||
Sbjct: 136701 aacaaactagaaacaagaaaa 136681
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>ref|NM_183999.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 243

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 35/40 (87%)
 Strand = Plus / Minus

                                                   
Query: 197 caggttctccatctggatattgctcttgagcggcacgtac 236
           |||||||||||||| |||| |||| | ||| |||||||||
Sbjct: 231 caggttctccatctcgatagtgctatcgagaggcacgtac 192
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>gb|AE014292.2| Brucella suis 1330 chromosome II, complete sequence
          Length = 1207381

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 277    tgtcgatctgctggttgtgg 296
              ||||||||||||||||||||
Sbjct: 333199 tgtcgatctgctggttgtgg 333218
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>gb|AY640177.1| Homo sapiens interleukin 12 receptor, beta 2 (IL12RB2) gene, complete
             cds
          Length = 93156

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 89    aacaagaaaactaaacaaat 108
             ||||||||||||||||||||
Sbjct: 18673 aacaagaaaactaaacaaat 18692
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>gb|AC111128.24| Mus musculus chromosome 18, clone RP23-338I7, complete sequence
          Length = 209784

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 89     aacaagaaaactaaacaaat 108
              ||||||||||||||||||||
Sbjct: 203891 aacaagaaaactaaacaaat 203872
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>gb|AC116593.4| Mus musculus BAC clone RP24-91C7 from chromosome 8, complete sequence
          Length = 174603

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 362   gacagagaccagcagagcgc 381
             ||||||||||||||||||||
Sbjct: 14730 gacagagaccagcagagcgc 14711
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>gb|AC133945.2| Mus musculus chromosome 18 clone RP24-146N1, complete sequence
          Length = 139630

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 89    aacaagaaaactaaacaaat 108
             ||||||||||||||||||||
Sbjct: 34520 aacaagaaaactaaacaaat 34501
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>gb|AC147241.2| Mus musculus BAC clone RP23-417C21 from chromosome 12, complete sequence
          Length = 199956

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 57     cagattacaacagacaagca 76
              ||||||||||||||||||||
Sbjct: 125965 cagattacaacagacaagca 125984
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>emb|Z79639.1|CEF54E4 Caenorhabditis elegans Cosmid F54E4, complete sequence
          Length = 43150

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 91    caagaaaactaaacaaatcctagc 114
             ||||||||| ||||||||||||||
Sbjct: 18599 caagaaaacaaaacaaatcctagc 18576
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>gb|AC124733.4| Mus musculus BAC clone RP23-306C18 from 12, complete sequence
          Length = 206837

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 57     cagattacaacagacaagca 76
              ||||||||||||||||||||
Sbjct: 159788 cagattacaacagacaagca 159769
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>emb|AL389925.10| Human DNA sequence from clone RP11-131O15 on chromosome 1 Contains the
             3' end of the gene for interleukin-23 receptor (IL23R), a
             DnaJ (Hsp40) homolog subfamily B member 6 (DNAJB6)
             pseudogene and the 5' end of the gene for interleukin 12
             receptor, beta 2 (IL12RB2), complete sequence
          Length = 122289

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 89    aacaagaaaactaaacaaat 108
             ||||||||||||||||||||
Sbjct: 77019 aacaagaaaactaaacaaat 77038
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>emb|AL023875.2|HS1044O17 Human DNA sequence from clone RP5-1044O17 on chromosome Xp11.3-11.4
             Contains the 5' end of a novel gene and a CpG island,
             complete sequence
          Length = 122325

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 30/32 (93%), Gaps = 1/32 (3%)
 Strand = Plus / Minus

                                             
Query: 78    aacaaactagaaacaagaaaact-aaacaaat 108
             ||||||||||||||||| ||||| ||||||||
Sbjct: 78951 aacaaactagaaacaaggaaactcaaacaaat 78920
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>emb|BX294116.3| Mouse DNA sequence from clone RP23-393O10 on chromosome 11 Contains the
             3' ends of two genes encoding novel proteins, complete
             sequence
          Length = 40232

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 92    aagaaaactaaacaaatcct 111
             ||||||||||||||||||||
Sbjct: 37807 aagaaaactaaacaaatcct 37788
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>emb|AL807244.7| Zebrafish DNA sequence from clone CH211-215I13 in linkage group 19
             Contains a novel gene similar to Spir-2, the first exon of
             a novel gene simialr to BAALC (brain and acute leukemia,
             cytoplasmic), the atp6v1c1l gene for  ATPase, H+
             transporting, lysosomal, V1 subunit C, isoform 1 like
             protein,  the oazin gene for ornithine decarboxylase
             antizyme inhibitor, a novel gene similar to rrm2
             (ribonucleotide reductase protein r2 class I), a novel
             gene remotely similar to LYRIC, a novel gene similar to
             LAPTM4B (lysosomal associated protein transmembrane 4
             beta) and a CpG island, complete sequence
          Length = 201745

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 89    aacaagaaaactaaacaaatccta 112
             ||||| ||||||||||||||||||
Sbjct: 20794 aacaaaaaaactaaacaaatccta 20771
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>gb|AC118658.4| Homo sapiens chromosome 15, clone RP11-35O15, complete sequence
          Length = 168727

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 88    aaacaagaaaactaaacaaa 107
             ||||||||||||||||||||
Sbjct: 29619 aaacaagaaaactaaacaaa 29600
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>emb|BX248241.20| Zebrafish DNA sequence from clone DKEY-22K18 in linkage group 19,
             complete sequence
          Length = 101595

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 89    aacaagaaaactaaacaaatccta 112
             ||||| ||||||||||||||||||
Sbjct: 81906 aacaaaaaaactaaacaaatccta 81929
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>emb|AJ421478.1| Mus musculus X-inactivation center region; segment 1/3
          Length = 247850

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 88    aaacaagaaaactaaacaaa 107
             ||||||||||||||||||||
Sbjct: 56752 aaacaagaaaactaaacaaa 56733
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>emb|BX537123.14| Zebrafish DNA sequence from clone CH211-202M24 in linkage group 13,
              complete sequence
          Length = 202654

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 81     aaactagaaacaagaaaact 100
              ||||||||||||||||||||
Sbjct: 174281 aaactagaaacaagaaaact 174262
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>gb|AC183287.1| Pan troglodytes chromosome X clone CH251-59K17 map human ortholog
             p11.4, complete sequence
          Length = 225601

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 30/32 (93%), Gaps = 1/32 (3%)
 Strand = Plus / Minus

                                             
Query: 78    aacaaactagaaacaagaaaact-aaacaaat 108
             ||||||||||||||||| ||||| ||||||||
Sbjct: 46702 aacaaactagaaacaaggaaactcaaacaaat 46671
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>dbj|AK035807.1| Mus musculus 16 days neonate cerebellum cDNA, RIKEN full-length
            enriched library, clone:9630005P16 product:tripartite
            motif protein 9, full insert sequence
          Length = 4561

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 57   cagattacaacagacaagca 76
            ||||||||||||||||||||
Sbjct: 3553 cagattacaacagacaagca 3534
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>gb|AC034244.6| Homo sapiens chromosome 5 clone RP11-101B14, complete sequence
          Length = 182892

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 77     caacaaactagaaacaagaa 96
              ||||||||||||||||||||
Sbjct: 180052 caacaaactagaaacaagaa 180033
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>gb|AE009723.1| Brucella melitensis 16M chromosome II, section 85 of 107 of the
            complete sequence
          Length = 10966

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 277  tgtcgatctgctggttgtgg 296
            ||||||||||||||||||||
Sbjct: 8579 tgtcgatctgctggttgtgg 8560
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>gb|AC158528.1| Mus musculus BAC clone RP23-259G7 from chromosome 8, complete sequence
          Length = 180194

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 362   gacagagaccagcagagcgc 381
             ||||||||||||||||||||
Sbjct: 12392 gacagagaccagcagagcgc 12411
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>gb|AE017224.1| Brucella abortus biovar 1 str. 9-941 chromosome II, complete sequence
          Length = 1162204

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 277    tgtcgatctgctggttgtgg 296
              ||||||||||||||||||||
Sbjct: 838448 tgtcgatctgctggttgtgg 838429
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>dbj|AP003852.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0440D10
          Length = 144340

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 35/40 (87%)
 Strand = Plus / Minus

                                                     
Query: 197   caggttctccatctggatattgctcttgagcggcacgtac 236
             |||||||||||||| |||| |||| | ||| |||||||||
Sbjct: 64987 caggttctccatctcgatagtgctatcgagaggcacgtac 64948
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>gb|AC134244.4| Mus musculus BAC clone RP24-218O13 from 14, complete sequence
          Length = 220538

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 88     aaacaagaaaactaaacaaa 107
              ||||||||||||||||||||
Sbjct: 122086 aaacaagaaaactaaacaaa 122067
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>emb|AM040265.1| Brucella melitensis biovar Abortus chromosome II, complete sequence,
              strain 2308
          Length = 1156948

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 277    tgtcgatctgctggttgtgg 296
              ||||||||||||||||||||
Sbjct: 838427 tgtcgatctgctggttgtgg 838408
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>emb|AL929253.5| Mouse DNA sequence from clone RP23-350F14 on chromosome 2, complete
             sequence
          Length = 133910

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 83    actagaaacaagaaaactaa 102
             ||||||||||||||||||||
Sbjct: 44832 actagaaacaagaaaactaa 44813
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>emb|AL671187.9| Mouse DNA sequence from clone RP23-273N4 on chromosome X, complete
              sequence
          Length = 205749

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 88     aaacaagaaaactaaacaaa 107
              ||||||||||||||||||||
Sbjct: 114118 aaacaagaaaactaaacaaa 114137


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,395,678
Number of Sequences: 3902068
Number of extensions: 3395678
Number of successful extensions: 67203
Number of sequences better than 10.0: 48
Number of HSP's better than 10.0 without gapping: 49
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 66950
Number of HSP's gapped (non-prelim): 255
length of query: 483
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 461
effective length of database: 17,147,199,772
effective search space: 7904859094892
effective search space used: 7904859094892
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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