ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart16b02
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ADA19_MOUSE (O35674) ADAM 19 precursor (EC 3.4.24.-) (A disinteg... 29 3.5
2ROBO3_HUMAN (Q96MS0) Roundabout homolog 3 precursor (Roundabout-... 28 4.5
3DSX_DROME (P23023) Protein doublesex 28 5.9
4VIT6_CAEEL (P18948) Vitellogenin 6 precursor 28 5.9

>ADA19_MOUSE (O35674) ADAM 19 precursor (EC 3.4.24.-) (A disintegrin and|
           metalloproteinase domain 19) (Meltrin beta)
          Length = 920

 Score = 28.9 bits (63), Expect = 3.5
 Identities = 18/44 (40%), Positives = 22/44 (50%)
 Frame = +1

Query: 130 PRSWQRAQRRESHQRPLSS**MADASNLT*MCLKSWSVHRPSPP 261
           P +  R +R+ES +RP  S  M  A N    CL S    RP PP
Sbjct: 821 PEAGARIERKESARRPPPSRPMPPAPN----CLLSQDFSRPRPP 860



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>ROBO3_HUMAN (Q96MS0) Roundabout homolog 3 precursor (Roundabout-like protein 3)|
          Length = 1386

 Score = 28.5 bits (62), Expect = 4.5
 Identities = 17/32 (53%), Positives = 20/32 (62%)
 Frame = -3

Query: 274  SSWSRGEMGDGRSRTSSTFKLSYSHRPFTRRR 179
            SS SRG  G GRSR+ S  + S S RP  +RR
Sbjct: 1352 SSSSRGSRGPGRSRSRSQSR-SQSQRPGQKRR 1382



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>DSX_DROME (P23023) Protein doublesex|
          Length = 549

 Score = 28.1 bits (61), Expect = 5.9
 Identities = 15/56 (26%), Positives = 24/56 (42%)
 Frame = +2

Query: 14  HHIHVSLMHSGYCWKHSLILHKMGNILGTVDKP*AVI*NLGLGNEHSAVNHINAHS 181
           HH+H    H G+   H  +LH           P A   +LG  +  ++  H +AH+
Sbjct: 132 HHVHAHHAHGGHHSHHGHVLHHQQAAAAAAAAPSAPASHLGGSSTAASSIHGHAHA 187



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>VIT6_CAEEL (P18948) Vitellogenin 6 precursor|
          Length = 1650

 Score = 28.1 bits (61), Expect = 5.9
 Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
 Frame = +1

Query: 79   NGKYTRNGRQTVSRYLKP--RSWQRAQRRESHQRPLS 183
            NGK   + +Q  S Y  P   SW R Q RE  + PL+
Sbjct: 1580 NGKSQESKKQKTSVYCLPSSNSWARRQMREIRREPLA 1616


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 47,129,265
Number of Sequences: 219361
Number of extensions: 853136
Number of successful extensions: 1964
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1919
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1963
length of database: 80,573,946
effective HSP length: 75
effective length of database: 64,121,871
effective search space used: 1538924904
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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