ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart16b02
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|U43495.1|HVU43495 Hordeum vulgare jasmonate-induced mRNA, par... 571 e-160
2ref|XM_470493.1| Oryza sativa (japonica cultivar-group), mRNA 42 1.00
3gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 42 1.00
4gb|AC096690.5| Oryza sativa chromosome 3 BAC OSJNBa0059G06 genom... 42 1.00
5dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.00
6dbj|AK102968.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 1.00
7gb|AC125531.3| Mus musculus BAC clone RP23-396D12 from chromosom... 40 3.9
8emb|AL354706.11| Human DNA sequence from clone RP11-229I7 on chr... 40 3.9
9gb|AC133106.3| Homo sapiens BAC clone RP11-634B17 from 2, comple... 40 3.9
10emb|BX927177.12| Zebrafish DNA sequence from clone DKEY-78D16 in... 40 3.9
11emb|CR388379.15| Zebrafish DNA sequence from clone CH211-129O15,... 40 3.9
12gb|CP000155.1| Hahella chejuensis KCTC 2396, complete genome 40 3.9

>gb|U43495.1|HVU43495 Hordeum vulgare jasmonate-induced mRNA, partial 3' sequence
          Length = 779

 Score =  571 bits (288), Expect = e-160
 Identities = 297/300 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ggagaagtgtttccatcatattcatgtgtcgctcatgcatagtggatattgttggaaaca 60
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 773 ggagaagtgtttccatcatattcatgtgtcgctcatgcatagtgtatattgttggaaaca 714

                                                                       
Query: 61  ttcacttattttgcataaaatgggaaatatactaggaacggtcgacaaaccgtaagccgt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 713 ttcacttattttgcataaaatgggaaatatactaggaacggtcgacaaaccgtaagccgt 654

                                                                       
Query: 121 tatttaaaacctcggtcttggcaacgagcacagcgccgtgaatcacatcaacgcccactc 180
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 653 tatttagaacctcggtcttggcaacgagcacagcgccgtgaatcacatcaacgcccactc 594

                                                                       
Query: 181 tcctcctagtgaatggccgatgcgagtaacttaacttaaatgtgcttgaagtcctggagc 240
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 593 tcctcctagtgaatggccgatgcgagtaacttaacttagatgtgcttgaagtcctggagc 534

                                                                       
Query: 241 gtccatcgcccatctccccccttgaccatgaacttgtgcttcggcacccaccagctcgcc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 533 gtccatcgcccatctccccccttgaccatgaacttgtgcttcggcacccaccagctcgcc 474



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>ref|XM_470493.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1724

 Score = 42.1 bits (21), Expect = 1.00
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 243 ccatcgcccatctcccccctt 263
           |||||||||||||||||||||
Sbjct: 176 ccatcgcccatctcccccctt 196



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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 42.1 bits (21), Expect = 1.00
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 243      ccatcgcccatctcccccctt 263
                |||||||||||||||||||||
Sbjct: 35925005 ccatcgcccatctcccccctt 35925025



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>gb|AC096690.5| Oryza sativa chromosome 3 BAC OSJNBa0059G06 genomic sequence, complete
             sequence
          Length = 145115

 Score = 42.1 bits (21), Expect = 1.00
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 243   ccatcgcccatctcccccctt 263
             |||||||||||||||||||||
Sbjct: 36120 ccatcgcccatctcccccctt 36100



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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 42.1 bits (21), Expect = 1.00
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 243      ccatcgcccatctcccccctt 263
                |||||||||||||||||||||
Sbjct: 36015135 ccatcgcccatctcccccctt 36015155



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>dbj|AK102968.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033115J18, full
           insert sequence
          Length = 1749

 Score = 42.1 bits (21), Expect = 1.00
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 243 ccatcgcccatctcccccctt 263
           |||||||||||||||||||||
Sbjct: 196 ccatcgcccatctcccccctt 216



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>gb|AC125531.3| Mus musculus BAC clone RP23-396D12 from chromosome 10, complete
             sequence
          Length = 219818

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 68    attttgcataaaatgggaaa 87
             ||||||||||||||||||||
Sbjct: 73416 attttgcataaaatgggaaa 73435



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>emb|AL354706.11| Human DNA sequence from clone RP11-229I7 on chromosome 13, complete
             sequence
          Length = 96045

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 61    ttcacttattttgcataaaa 80
             ||||||||||||||||||||
Sbjct: 29584 ttcacttattttgcataaaa 29603



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>gb|AC133106.3| Homo sapiens BAC clone RP11-634B17 from 2, complete sequence
          Length = 109568

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 76    taaaatgggaaatatactag 95
             ||||||||||||||||||||
Sbjct: 81268 taaaatgggaaatatactag 81249



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>emb|BX927177.12| Zebrafish DNA sequence from clone DKEY-78D16 in linkage group 19,
             complete sequence
          Length = 154891

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 43    tggatattgttggaaacatt 62
             ||||||||||||||||||||
Sbjct: 39373 tggatattgttggaaacatt 39392



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>emb|CR388379.15| Zebrafish DNA sequence from clone CH211-129O15, complete sequence
          Length = 149807

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 55     gaaacattcacttattttgc 74
              ||||||||||||||||||||
Sbjct: 101727 gaaacattcacttattttgc 101708



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>gb|CP000155.1| Hahella chejuensis KCTC 2396, complete genome
          Length = 7215267

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 188     agtgaatggccgatgcgagt 207
               ||||||||||||||||||||
Sbjct: 6301611 agtgaatggccgatgcgagt 6301630


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,389,129
Number of Sequences: 3902068
Number of extensions: 2389129
Number of successful extensions: 43350
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 43321
Number of HSP's gapped (non-prelim): 29
length of query: 300
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 278
effective length of database: 17,147,199,772
effective search space: 4766921536616
effective search space used: 4766921536616
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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