Clone Name | rbart16b02 |
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Clone Library Name | barley_pub |
>gb|U43495.1|HVU43495 Hordeum vulgare jasmonate-induced mRNA, partial 3' sequence Length = 779 Score = 571 bits (288), Expect = e-160 Identities = 297/300 (99%) Strand = Plus / Minus Query: 1 ggagaagtgtttccatcatattcatgtgtcgctcatgcatagtggatattgttggaaaca 60 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct: 773 ggagaagtgtttccatcatattcatgtgtcgctcatgcatagtgtatattgttggaaaca 714 Query: 61 ttcacttattttgcataaaatgggaaatatactaggaacggtcgacaaaccgtaagccgt 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 713 ttcacttattttgcataaaatgggaaatatactaggaacggtcgacaaaccgtaagccgt 654 Query: 121 tatttaaaacctcggtcttggcaacgagcacagcgccgtgaatcacatcaacgcccactc 180 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 653 tatttagaacctcggtcttggcaacgagcacagcgccgtgaatcacatcaacgcccactc 594 Query: 181 tcctcctagtgaatggccgatgcgagtaacttaacttaaatgtgcttgaagtcctggagc 240 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct: 593 tcctcctagtgaatggccgatgcgagtaacttaacttagatgtgcttgaagtcctggagc 534 Query: 241 gtccatcgcccatctccccccttgaccatgaacttgtgcttcggcacccaccagctcgcc 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 533 gtccatcgcccatctccccccttgaccatgaacttgtgcttcggcacccaccagctcgcc 474
>ref|XM_470493.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1724 Score = 42.1 bits (21), Expect = 1.00 Identities = 21/21 (100%) Strand = Plus / Plus Query: 243 ccatcgcccatctcccccctt 263 ||||||||||||||||||||| Sbjct: 176 ccatcgcccatctcccccctt 196
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 42.1 bits (21), Expect = 1.00 Identities = 21/21 (100%) Strand = Plus / Plus Query: 243 ccatcgcccatctcccccctt 263 ||||||||||||||||||||| Sbjct: 35925005 ccatcgcccatctcccccctt 35925025
>gb|AC096690.5| Oryza sativa chromosome 3 BAC OSJNBa0059G06 genomic sequence, complete sequence Length = 145115 Score = 42.1 bits (21), Expect = 1.00 Identities = 21/21 (100%) Strand = Plus / Minus Query: 243 ccatcgcccatctcccccctt 263 ||||||||||||||||||||| Sbjct: 36120 ccatcgcccatctcccccctt 36100
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 42.1 bits (21), Expect = 1.00 Identities = 21/21 (100%) Strand = Plus / Plus Query: 243 ccatcgcccatctcccccctt 263 ||||||||||||||||||||| Sbjct: 36015135 ccatcgcccatctcccccctt 36015155
>dbj|AK102968.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033115J18, full insert sequence Length = 1749 Score = 42.1 bits (21), Expect = 1.00 Identities = 21/21 (100%) Strand = Plus / Plus Query: 243 ccatcgcccatctcccccctt 263 ||||||||||||||||||||| Sbjct: 196 ccatcgcccatctcccccctt 216
>gb|AC125531.3| Mus musculus BAC clone RP23-396D12 from chromosome 10, complete sequence Length = 219818 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 68 attttgcataaaatgggaaa 87 |||||||||||||||||||| Sbjct: 73416 attttgcataaaatgggaaa 73435
>emb|AL354706.11| Human DNA sequence from clone RP11-229I7 on chromosome 13, complete sequence Length = 96045 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 61 ttcacttattttgcataaaa 80 |||||||||||||||||||| Sbjct: 29584 ttcacttattttgcataaaa 29603
>gb|AC133106.3| Homo sapiens BAC clone RP11-634B17 from 2, complete sequence Length = 109568 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 76 taaaatgggaaatatactag 95 |||||||||||||||||||| Sbjct: 81268 taaaatgggaaatatactag 81249
>emb|BX927177.12| Zebrafish DNA sequence from clone DKEY-78D16 in linkage group 19, complete sequence Length = 154891 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 43 tggatattgttggaaacatt 62 |||||||||||||||||||| Sbjct: 39373 tggatattgttggaaacatt 39392
>emb|CR388379.15| Zebrafish DNA sequence from clone CH211-129O15, complete sequence Length = 149807 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 55 gaaacattcacttattttgc 74 |||||||||||||||||||| Sbjct: 101727 gaaacattcacttattttgc 101708
>gb|CP000155.1| Hahella chejuensis KCTC 2396, complete genome Length = 7215267 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 188 agtgaatggccgatgcgagt 207 |||||||||||||||||||| Sbjct: 6301611 agtgaatggccgatgcgagt 6301630 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,389,129 Number of Sequences: 3902068 Number of extensions: 2389129 Number of successful extensions: 43350 Number of sequences better than 10.0: 12 Number of HSP's better than 10.0 without gapping: 12 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 43321 Number of HSP's gapped (non-prelim): 29 length of query: 300 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 278 effective length of database: 17,147,199,772 effective search space: 4766921536616 effective search space used: 4766921536616 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)