ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart16b01 |
|---|---|
| Clone Library Name | barley_pub |
>PAT5_SOLTU (P15478) Patatin T5 precursor (Potato tuber protein)| Length = 386 Score = 76.6 bits (187), Expect = 3e-14 Identities = 43/100 (43%), Positives = 64/100 (64%) Frame = -1 Query: 498 SHASADMVDIRAAVLFEALRIEENYLRIQDDSLTGQTSSVDIATKENMEALIGIGKNLLT 319 S AS+ M D + F+AL + NYLR+Q+++LTG T+ +D A++ NM+ L+ +G++LL Sbjct: 292 SAASSYMTDYYLSTAFQALDSQNNYLRVQENALTGTTTELDDASEANMQLLVQVGEDLLK 351 Query: 318 KTVSRVNIDNGMYETVDGAGTNEEALVRFAKRLSEERKLR 199 K+VS+ D T EEAL RFAK LS+ +KLR Sbjct: 352 KSVSK-----------DNPETYEEALKRFAKLLSDRKKLR 380
>PAT3_SOLTU (P11768) Patatin class 1 precursor (Patatin class I) (Potato tuber| protein) Length = 386 Score = 75.1 bits (183), Expect = 1e-13 Identities = 42/98 (42%), Positives = 61/98 (62%) Frame = -1 Query: 492 ASADMVDIRAAVLFEALRIEENYLRIQDDSLTGQTSSVDIATKENMEALIGIGKNLLTKT 313 AS+ M D + +F+A + NYLR+Q+++LTG T+ +D A++ NME L+ +G+ LL K Sbjct: 294 ASSYMTDYYISTVFQARHSQNNYLRVQENALTGTTTEMDDASEANMELLVQVGETLLKKP 353 Query: 312 VSRVNIDNGMYETVDGAGTNEEALVRFAKRLSEERKLR 199 VS+ D T EEAL RFAK LS+ +KLR Sbjct: 354 VSK-----------DSPETYEEALKRFAKLLSDRKKLR 380
>PAT0_SOLTU (P07745) Patatin precursor (Potato tuber protein)| Length = 386 Score = 75.1 bits (183), Expect = 1e-13 Identities = 42/98 (42%), Positives = 61/98 (62%) Frame = -1 Query: 492 ASADMVDIRAAVLFEALRIEENYLRIQDDSLTGQTSSVDIATKENMEALIGIGKNLLTKT 313 AS+ M D + +F+A + NYLR+Q+++LTG T+ +D A++ NME L+ +G+ LL K Sbjct: 294 ASSYMTDYYISTVFQARHSQNNYLRVQENALTGTTTEMDDASEANMELLVQVGETLLKKP 353 Query: 312 VSRVNIDNGMYETVDGAGTNEEALVRFAKRLSEERKLR 199 VS+ D T EEAL RFAK LS+ +KLR Sbjct: 354 VSK-----------DSPETYEEALKRFAKLLSDRKKLR 380
>PAT1_SOLTU (P15476) Patatin B1 precursor (Potato tuber protein) (Fragment)| Length = 377 Score = 74.3 bits (181), Expect = 2e-13 Identities = 42/98 (42%), Positives = 60/98 (61%) Frame = -1 Query: 492 ASADMVDIRAAVLFEALRIEENYLRIQDDSLTGQTSSVDIATKENMEALIGIGKNLLTKT 313 AS+ M D + +F+A + NYLR+Q+++LTG T+ +D A++ NME L+ +G+ LL K Sbjct: 285 ASSYMTDYYISTVFQARHSQNNYLRVQENALTGTTTEMDDASEANMELLVQVGETLLKKP 344 Query: 312 VSRVNIDNGMYETVDGAGTNEEALVRFAKRLSEERKLR 199 VS+ D T EEAL RFAK LS +KLR Sbjct: 345 VSK-----------DSPETYEEALKRFAKLLSNRKKLR 371
>PAT2_SOLTU (P15477) Patatin B2 precursor (Potato tuber protein)| Length = 386 Score = 73.2 bits (178), Expect = 4e-13 Identities = 41/98 (41%), Positives = 60/98 (61%) Frame = -1 Query: 492 ASADMVDIRAAVLFEALRIEENYLRIQDDSLTGQTSSVDIATKENMEALIGIGKNLLTKT 313 AS+ M D + +F+A + NYLR+Q+++L G T+ +D A++ NME L+ +G+ LL K Sbjct: 294 ASSYMTDYYISTVFQARHSQNNYLRVQENALNGTTTEMDDASEANMELLVQVGETLLKKP 353 Query: 312 VSRVNIDNGMYETVDGAGTNEEALVRFAKRLSEERKLR 199 VS+ D T EEAL RFAK LS+ +KLR Sbjct: 354 VSK-----------DSPETYEEALKRFAKLLSDRKKLR 380
>EDG5_RAT (P47752) Sphingosine 1-phosphate receptor Edg-5 (S1P receptor| Edg-5) (G-protein coupled receptor H218) (AGR16) (Endothelial differentiation G-protein coupled receptor 5) (Sphingosine 1-phosphate receptor 2) (S1P2) Length = 352 Score = 32.7 bits (73), Expect = 0.55 Identities = 23/58 (39%), Positives = 34/58 (58%) Frame = +2 Query: 212 SSESLLAKRTSASSLVPAPSTVSYIPLSMFTRDTVLVSRFLPIPISASMFSLVAISTE 385 +S+ L A++L+ P T+S PL F R+ S F I +SAS+FSL+AI+ E Sbjct: 77 ASDLLAGVAFVANTLLSGPVTLSLTPLQWFAREG---SAF--ITLSASVFSLLAIAIE 129
>CS120_WHEAT (P46525) Cold-shock protein CS120| Length = 391 Score = 30.4 bits (67), Expect = 2.7 Identities = 17/52 (32%), Positives = 21/52 (40%), Gaps = 11/52 (21%) Frame = -3 Query: 418 HPGRLAHGANVLGGYRHQREHGGAYWDR*ESAH-----------QDRIPGKH 296 HPG HGA GG Q+ H G AH +D++PG H Sbjct: 38 HPGTATHGAPATGGAYGQQGHAGTTGTGLHGAHAGEKKGVMENIKDKLPGGH 89
>EDG5_MOUSE (P52592) Sphingosine 1-phosphate receptor Edg-5 (S1P receptor| Edg-5) (Lysophospholipid receptor B2) (Endothelial differentiation G-protein coupled receptor 5) (Sphingosine 1-phosphate receptor 2) (S1P2) Length = 352 Score = 30.4 bits (67), Expect = 2.7 Identities = 22/58 (37%), Positives = 34/58 (58%) Frame = +2 Query: 212 SSESLLAKRTSASSLVPAPSTVSYIPLSMFTRDTVLVSRFLPIPISASMFSLVAISTE 385 +S+ L A++L+ T+S P+ F R+ VS F I +SAS+FSL+AI+ E Sbjct: 77 ASDLLAGVAFVANTLLSGHVTLSLTPVQWFARE---VSAF--ITLSASVFSLLAIAIE 129
>HUTH_PSESM (Q87UM1) Histidine ammonia-lyase (EC 4.3.1.3) (Histidase)| Length = 515 Score = 30.0 bits (66), Expect = 3.6 Identities = 17/44 (38%), Positives = 25/44 (56%) Frame = +1 Query: 313 GLGEQILTDPNKRLHVLFGGDIHRGRLPRERVVLDAQVVLLNAE 444 G+G+ I D + + VL + RG RVV+DA + L+NAE Sbjct: 92 GVGQPISDDLVRLIMVLKVNSLSRGFSGIRRVVIDALIALINAE 135
>MET4_YEAST (P32389) Transcriptional activator of sulfur metabolism MET4| (Methionine-requiring protein 4) Length = 672 Score = 30.0 bits (66), Expect = 3.6 Identities = 15/55 (27%), Positives = 31/55 (56%), Gaps = 2/55 (3%) Frame = -1 Query: 339 IGKNLLTKTVSRVNIDNGMYETVDGAGTNEEALVRFAKRLS--EERKLRQTNLNS 181 I ++L + RVN+ NG Y ++ AG + + + A ++ ++K+R+ N N+ Sbjct: 353 IPTSVLVTLLPRVNVPNGAYNSLISAGFDNDQIDAIAAIMAYHHQKKIRENNSNN 407
>THSA_THEK1 (P61112) Thermosome subunit alpha (Thermosome subunit 1)| (Chaperonin alpha subunit) Length = 548 Score = 29.6 bits (65), Expect = 4.7 Identities = 23/69 (33%), Positives = 35/69 (50%), Gaps = 2/69 (2%) Frame = -1 Query: 435 EENYLRIQDDSLTGQT--SSVDIATKENMEALIGIGKNLLTKTVSRVNIDNGMYETVDGA 262 EE L+I S+TG+ S ++ K +EA+ + + K V V++DN +E G Sbjct: 151 EETLLKIAATSITGKNAESHKELLAKLAVEAVKQVAEKKDGKYV--VDLDNIKFEKKAGE 208 Query: 261 GTNEEALVR 235 G E LVR Sbjct: 209 GVEESELVR 217
>THSA_PYRKO (P61111) Thermosome subunit alpha (Thermosome subunit 1)| (Chaperonin alpha subunit) Length = 548 Score = 29.6 bits (65), Expect = 4.7 Identities = 23/69 (33%), Positives = 35/69 (50%), Gaps = 2/69 (2%) Frame = -1 Query: 435 EENYLRIQDDSLTGQT--SSVDIATKENMEALIGIGKNLLTKTVSRVNIDNGMYETVDGA 262 EE L+I S+TG+ S ++ K +EA+ + + K V V++DN +E G Sbjct: 151 EETLLKIAATSITGKNAESHKELLAKLAVEAVKQVAEKKDGKYV--VDLDNIKFEKKAGE 208 Query: 261 GTNEEALVR 235 G E LVR Sbjct: 209 GVEESELVR 217
>Y1693_CLOPE (Q8XJR2) Hypothetical zinc metalloprotease CPE1693 (EC 3.4.24.-)| Length = 335 Score = 29.6 bits (65), Expect = 4.7 Identities = 19/58 (32%), Positives = 31/58 (53%) Frame = -1 Query: 450 EALRIEENYLRIQDDSLTGQTSSVDIATKENMEALIGIGKNLLTKTVSRVNIDNGMYE 277 E L+I+ N + DD G + +A +E I G ++LTKTV + ++GMY+ Sbjct: 139 EFLKIDGNKIHTTDDFRMG----LALAKGNPVELEIKRGNDVLTKTVQPILNESGMYQ 192
>GOSR1_RAT (Q62931) Golgi SNAP receptor complex member 1 (28 kDa Golgi SNARE| protein) (28 kDa cis-Golgi SNARE p28) (GOS-28) Length = 250 Score = 29.3 bits (64), Expect = 6.1 Identities = 23/67 (34%), Positives = 36/67 (53%) Frame = -1 Query: 498 SHASADMVDIRAAVLFEALRIEENYLRIQDDSLTGQTSSVDIATKENMEALIGIGKNLLT 319 S+ S V+ R LF E ++LR D L +T S+ +ATKENM + G+ K++ + Sbjct: 148 SYKSGSGVNNRRTELFLK---EHDHLR-NSDRLIEETISIAMATKENMTSQRGMLKSIHS 203 Query: 318 KTVSRVN 298 K + N Sbjct: 204 KMNTLAN 210
>GOSR1_MOUSE (O88630) Golgi SNAP receptor complex member 1 (28 kDa Golgi SNARE| protein) (28 kDa cis-Golgi SNARE p28) (GOS-28) Length = 250 Score = 29.3 bits (64), Expect = 6.1 Identities = 23/67 (34%), Positives = 36/67 (53%) Frame = -1 Query: 498 SHASADMVDIRAAVLFEALRIEENYLRIQDDSLTGQTSSVDIATKENMEALIGIGKNLLT 319 S+ S V+ R LF E ++LR D L +T S+ +ATKENM + G+ K++ + Sbjct: 148 SYKSGSGVNNRRTELFLK---EHDHLR-NSDRLIEETISIAMATKENMTSQRGMLKSIHS 203 Query: 318 KTVSRVN 298 K + N Sbjct: 204 KMNTLAN 210
>GOSR1_HUMAN (O95249) Golgi SNAP receptor complex member 1 (28 kDa Golgi SNARE| protein) (28 kDa cis-Golgi SNARE p28) (GOS-28) Length = 250 Score = 29.3 bits (64), Expect = 6.1 Identities = 23/67 (34%), Positives = 36/67 (53%) Frame = -1 Query: 498 SHASADMVDIRAAVLFEALRIEENYLRIQDDSLTGQTSSVDIATKENMEALIGIGKNLLT 319 S+ S V+ R LF E ++LR D L +T S+ +ATKENM + G+ K++ + Sbjct: 148 SYKSGSGVNNRRTELFLK---EHDHLR-NSDRLIEETISIAMATKENMTSQRGMLKSIHS 203 Query: 318 KTVSRVN 298 K + N Sbjct: 204 KMNTLAN 210
>GOSR1_CRIGR (O08522) Golgi SNAP receptor complex member 1 (28 kDa Golgi SNARE| protein) (28 kDa cis-Golgi SNARE p28) (GOS-28) Length = 250 Score = 29.3 bits (64), Expect = 6.1 Identities = 23/67 (34%), Positives = 36/67 (53%) Frame = -1 Query: 498 SHASADMVDIRAAVLFEALRIEENYLRIQDDSLTGQTSSVDIATKENMEALIGIGKNLLT 319 S+ S V+ R LF E ++LR D L +T S+ +ATKENM + G+ K++ + Sbjct: 148 SYKSGSGVNNRRTELFLK---EHDHLR-NSDRLIEETISIAMATKENMTSQRGMLKSIHS 203 Query: 318 KTVSRVN 298 K + N Sbjct: 204 KMNTLAN 210
>THSA_THEK8 (O24731) Thermosome subunit alpha (Thermosome subunit 1)| (Chaperonin alpha subunit) Length = 549 Score = 29.3 bits (64), Expect = 6.1 Identities = 23/69 (33%), Positives = 35/69 (50%), Gaps = 2/69 (2%) Frame = -1 Query: 435 EENYLRIQDDSLTGQT--SSVDIATKENMEALIGIGKNLLTKTVSRVNIDNGMYETVDGA 262 EE LRI S+TG+ S ++ K ++A+ + + K V V++DN +E G Sbjct: 151 EETLLRIAMTSITGKNAESHKELLAKLAVDAVKQVAEKKDGKYV--VDLDNIKFEKKAGE 208 Query: 261 GTNEEALVR 235 G E LVR Sbjct: 209 GVEESELVR 217
>GOSR1_PONPY (Q5RBL6) Golgi SNAP receptor complex member 1| Length = 248 Score = 29.3 bits (64), Expect = 6.1 Identities = 23/67 (34%), Positives = 36/67 (53%) Frame = -1 Query: 498 SHASADMVDIRAAVLFEALRIEENYLRIQDDSLTGQTSSVDIATKENMEALIGIGKNLLT 319 S+ S V+ R LF E ++LR D L +T S+ +ATKENM + G+ K++ + Sbjct: 146 SYKSGSGVNNRRTELFLK---EHDHLR-NSDRLIEETISIAMATKENMTSQRGMLKSIHS 201 Query: 318 KTVSRVN 298 K + N Sbjct: 202 KMNTLAN 208
>GDIB_MOUSE (Q61598) Rab GDP dissociation inhibitor beta (Rab GDI beta)| (Guanosine diphosphate dissociation inhibitor 2) (GDI-2) (GDI-3) Length = 445 Score = 29.3 bits (64), Expect = 6.1 Identities = 18/50 (36%), Positives = 27/50 (54%) Frame = +1 Query: 298 VYPGYGLGEQILTDPNKRLHVLFGGDIHRGRLPRERVVLDAQVVLLNAEG 447 +YP YGLGE L RL ++GG + E +V + +VV + +EG Sbjct: 225 LYPLYGLGE--LPQGFARLSAIYGGTYMLNKPIEEIIVQNGKVVGVKSEG 272
>GDI1_SCHPO (Q10305) Probable secretory pathway GDP dissociation inhibitor 1| Length = 440 Score = 28.9 bits (63), Expect = 7.9 Identities = 20/55 (36%), Positives = 28/55 (50%) Frame = +1 Query: 208 ALLGEPLGEADERLFIGASTVDGLIHPIVNVYPGYGLGEQILTDPNKRLHVLFGG 372 A L +P E ER+ + AS++ +YP YGLGE L RL ++GG Sbjct: 195 AYLKKPARETRERILLYASSI-AKFGKSPYIYPLYGLGE--LPQGFARLSAIYGG 246
>MEGF6_HUMAN (O75095) Multiple epidermal growth factor-like domains 6 precursor| (EGF-like domain-containing protein 3) (Multiple EGF-like domain protein 3) Length = 1229 Score = 28.9 bits (63), Expect = 7.9 Identities = 18/40 (45%), Positives = 20/40 (50%) Frame = +3 Query: 189 GWFGAACAPRRASWRSGRAPLHWCQHRRRSHTSHCQCLPG 308 GWFG ACA +R S G A C H T C+C PG Sbjct: 931 GWFGEACA-QRCSCPPGAA----CHH----VTGACRCPPG 961
>MURA_GEOMG (Q39YP9) UDP-N-acetylglucosamine 1-carboxyvinyltransferase (EC| 2.5.1.7) (Enoylpyruvate transferase) (UDP-N-acetylglucosamine enolpyruvyl transferase) (EPT) Length = 417 Score = 28.9 bits (63), Expect = 7.9 Identities = 23/81 (28%), Positives = 37/81 (45%), Gaps = 11/81 (13%) Frame = -1 Query: 462 AVLFEALRIEENYLRIQDDSLTGQTSSVDIAT-----KENMEALIGIGKNLL------TK 316 A L +R+E Y+ + L G + DIAT + M A + G+ +L + Sbjct: 131 AALGADIRLEHGYVEAKAKKLKGARINFDIATVGGTEQLMMAAALAKGETILENAAREPE 190 Query: 315 TVSRVNIDNGMYETVDGAGTN 253 + +I N M +DGAGT+ Sbjct: 191 IIDLADILNRMGARIDGAGTD 211
>PTSN_KLEOX (P17162) Nitrogen regulatory protein (Enzyme IIA-NTR) [Includes:| Phosphotransferase enzyme IIA component (EC 2.7.1.-) (PTS system EIIA component)] Length = 162 Score = 28.9 bits (63), Expect = 7.9 Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 4/46 (8%) Frame = -1 Query: 369 TKENMEALIGIGKNLLTKTVSR----VNIDNGMYETVDGAGTNEEA 244 TK ++ L + K L KT+ R D +YE + AG+N EA Sbjct: 117 TKTHLHTLSLVAKRLADKTICRRLRAAQSDEELYEIITEAGSNNEA 162
>PURL_SYNP7 (Q55041) Phosphoribosylformylglycinamidine synthase II (EC 6.3.5.3)| (FGAM synthase II) Length = 777 Score = 28.9 bits (63), Expect = 7.9 Identities = 21/62 (33%), Positives = 30/62 (48%) Frame = +1 Query: 202 QLALLGEPLGEADERLFIGASTVDGLIHPIVNVYPGYGLGEQILTDPNKRLHVLFGGDIH 381 +L LLG P AD+RL +G S + H V GL +I D +R+ + IH Sbjct: 600 RLYLLGLPTQAADDRLSLGGSEYLAIAHQTV-----AGLPPRIDFDLERRVQAVCRLGIH 654 Query: 382 RG 387 +G Sbjct: 655 QG 656
>PURL_SYNP6 (Q5N1Y6) Phosphoribosylformylglycinamidine synthase II (EC 6.3.5.3)| (FGAM synthase II) Length = 777 Score = 28.9 bits (63), Expect = 7.9 Identities = 21/62 (33%), Positives = 30/62 (48%) Frame = +1 Query: 202 QLALLGEPLGEADERLFIGASTVDGLIHPIVNVYPGYGLGEQILTDPNKRLHVLFGGDIH 381 +L LLG P AD+RL +G S + H V GL +I D +R+ + IH Sbjct: 600 RLYLLGLPTQAADDRLSLGGSEYLAIAHQTV-----AGLPPRIDFDLERRVQAVCRLGIH 654 Query: 382 RG 387 +G Sbjct: 655 QG 656 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 66,602,263 Number of Sequences: 219361 Number of extensions: 1355600 Number of successful extensions: 4051 Number of sequences better than 10.0: 26 Number of HSP's better than 10.0 without gapping: 3950 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4046 length of database: 80,573,946 effective HSP length: 104 effective length of database: 57,760,402 effective search space used: 3523384522 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
