ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart16a05
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AC104708.2| Oryza sativa (japonica cultivar-group) chromosome... 88 7e-15
2dbj|AK061891.1| Oryza sativa (japonica cultivar-group) cDNA clon... 88 7e-15
3dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 88 7e-15
4dbj|AK099795.1| Oryza sativa (japonica cultivar-group) cDNA clon... 88 7e-15
5dbj|AK072244.1| Oryza sativa (japonica cultivar-group) cDNA clon... 88 7e-15
6gb|AY103798.1| Zea mays PCO149393 mRNA sequence 80 2e-12
7emb|AL355852.23| Human DNA sequence from clone RP11-403E24 on ch... 48 0.006
8emb|Z83836.2|HS111J24 Human DNA sequence from clone RP1-111J24 o... 44 0.098
9gb|AC113761.6| Rattus norvegicus X BAC CH230-91H16 (Children's H... 44 0.098
10gb|AC119825.11| Mus musculus chromosome 3, clone RP23-358O22, co... 42 0.39
11gb|AC096623.31| Mus musculus strain 129/SvJ chromosome 3 clone m... 42 0.39
12emb|CR937052.2| Rattus norvegicus chromosome 1 BAC CH230-445C15,... 40 1.5
13emb|AL024474.1|HS91J24 Human DNA sequence from clone RP1-91J24 o... 40 1.5
14gb|CP000083.1| Colwellia psychrerythraea 34H, complete genome 40 1.5
15emb|BX510316.11| Zebrafish DNA sequence from clone CH211-194J3 i... 40 1.5
16gb|AC087368.7| Homo sapiens chromosome 8, clone RP11-711G22, com... 40 1.5
17gb|AC009093.10| Homo sapiens chromosome 16 clone RP11-426C22, co... 40 1.5
18emb|BX248308.11| Zebrafish DNA sequence from clone DKEY-247M21 i... 40 1.5
19gb|AC009901.6|AC009901 Homo sapiens chromosome 8, clone RP11-98H... 40 1.5
20dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 40 1.5
21gb|AC138512.4| Homo sapiens chromosome 16 clone RP11-93B18, comp... 40 1.5
22gb|AC092630.3| Homo sapiens BAC clone RP11-321C18 from 2, comple... 40 1.5
23gb|AC134312.3| Homo sapiens chromosome 16 clone RP11-863P13, com... 40 1.5
24gb|AC009297.4| Homo sapiens BAC clone RP11-3E14 from 2, complete... 40 1.5
25dbj|AP003510.3| Oryza sativa (japonica cultivar-group) genomic D... 40 1.5
26emb|BX248743.2| Zebrafish DNA sequence from clone CH211-202P11, ... 40 1.5
27emb|AL808014.8| Mouse DNA sequence from clone RP23-142A6 on chro... 40 1.5
28emb|Z57405.1|HS175B11R H.sapiens CpG island DNA genomic Mse1 fra... 40 1.5
29emb|AL133502.4|CNS01DVA Human chromosome 14 DNA sequence BAC R-1... 40 1.5
30emb|AJ495848.1|PLI495848 Paracentrotus lividus partial dnmt1 gen... 40 1.5
31emb|AL772296.6| Mouse DNA sequence from clone RP23-66O9 on chrom... 40 1.5
32gb|AC150887.4| Bos taurus BAC CH240-483B20 (Children's Hospital... 38 6.0
33ref|NM_003617.2| Homo sapiens regulator of G-protein signalling ... 38 6.0
34gb|AC005161.1| Homo sapiens BAC clone CTB-17K18 from 7, complete... 38 6.0
35gb|AC123820.4| Mus musculus BAC clone RP23-461O5 from chromosome... 38 6.0
36gb|AC122385.2| Mus musculus BAC clone RP24-72B22 from chromosome... 38 6.0
37gb|AC092423.5| Homo sapiens BAC clone RP13-492C18 from 7, comple... 38 6.0
38gb|AC162788.2| Mus musculus chromosome 1, clone RP23-79C14, comp... 38 6.0
39emb|AL583850.5| Human DNA sequence from clone RP11-430G6 on chro... 38 6.0
40gb|AF173551.1| Homo sapiens MSTP106 mRNA, complete cds 38 6.0
41gb|AF172821.1| Homo sapiens MSTP092 (MST092) mRNA, complete cds 38 6.0
42gb|AC122091.6| Rattus norvegicus 9 BAC CH230-375L16 (Children's ... 38 6.0
43emb|AL158812.10| Human DNA sequence from clone RP11-157E11 on ch... 38 6.0
44emb|AL122006.11|HSJ730H16 Human DNA sequence from clone RP4-730H... 38 6.0
45emb|AL035455.30|HS1018E9 Human DNA sequence from clone RP5-1018E... 38 6.0
46emb|Z99112.2|BSUB0009 Bacillus subtilis complete genome (section... 38 6.0
47emb|BX908740.5| Zebrafish DNA sequence from clone DKEY-88E10 in ... 38 6.0
48gb|AC146469.23| Pan troglodytes clone rp43-45g24, complete sequence 38 6.0
49gb|AC106806.2| Homo sapiens chromosome 5 clone RP11-510I6, compl... 38 6.0
50gb|AC091154.3| Homo sapiens chromosome 17, clone RP11-750B16, co... 38 6.0
51dbj|AK031178.1| Mus musculus 13 days embryo forelimb cDNA, RIKEN... 38 6.0
52gb|AC018470.11| Homo sapiens BAC clone RP11-572N21 from 2, compl... 38 6.0
53gb|AC155725.3| Mus musculus 6 BAC RP24-231N5 (Roswell Park Cance... 38 6.0
54gb|AC104076.5| Homo sapiens BAC clone RP11-397C2 from 2, complet... 38 6.0
55gb|AC009429.3|AC009429 Homo sapiens, clone RP11-45M17, complete ... 38 6.0
56dbj|AK173764.1| Ciona intestinalis cDNA, clone:citb003n13, full ... 38 6.0
57emb|AL670238.5| Mouse DNA sequence from clone RP23-16J5 on chrom... 38 6.0
58emb|BX649545.14| Zebrafish DNA sequence from clone CH211-9N13 in... 38 6.0
59gb|AC120438.9| Mus musculus chromosome 7, clone RP24-572G2, comp... 38 6.0
60emb|BX537427.1|HSM805729 Homo sapiens mRNA; cDNA DKFZp686G1211 (... 38 6.0
61emb|BX005272.6| Zebrafish DNA sequence from clone DKEY-23D7, com... 38 6.0
62gb|AC133083.3| Mus musculus BAC clone RP24-342G5 from 12, comple... 38 6.0
63gb|AC140416.2| Mus musculus BAC clone RP24-347A16 from 6, comple... 38 6.0
64gb|BC029357.1| Homo sapiens regulator of G-protein signalling 5,... 38 6.0 
>gb|AC104708.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1174_H11,
             complete sequence
          Length = 102567

 Score = 87.7 bits (44), Expect = 7e-15
 Identities = 56/60 (93%)
 Strand = Plus / Minus

                                                                         
Query: 36    tgtacaaataaacatggaacattcacaggccctggcaggaaacagtcaacaaatatggct 95
             |||||||||||||| |||||||| ||||||| ||||||||| ||||||||||||||||||
Sbjct: 90556 tgtacaaataaacaaggaacattaacaggccttggcaggaagcagtcaacaaatatggct 90497
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>dbj|AK061891.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-041-G03, full
            insert sequence
          Length = 1304

 Score = 87.7 bits (44), Expect = 7e-15
 Identities = 56/60 (93%)
 Strand = Plus / Minus

                                                                        
Query: 36   tgtacaaataaacatggaacattcacaggccctggcaggaaacagtcaacaaatatggct 95
            |||||||||||||| |||||||| ||||||| ||||||||| ||||||||||||||||||
Sbjct: 1210 tgtacaaataaacaaggaacattaacaggccttggcaggaagcagtcaacaaatatggct 1151
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 87.7 bits (44), Expect = 7e-15
 Identities = 56/60 (93%)
 Strand = Plus / Minus

                                                                            
Query: 36       tgtacaaataaacatggaacattcacaggccctggcaggaaacagtcaacaaatatggct 95
                |||||||||||||| |||||||| ||||||| ||||||||| ||||||||||||||||||
Sbjct: 19630657 tgtacaaataaacaaggaacattaacaggccttggcaggaagcagtcaacaaatatggct 19630598
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>dbj|AK099795.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013097F10, full
            insert sequence
          Length = 2538

 Score = 87.7 bits (44), Expect = 7e-15
 Identities = 56/60 (93%)
 Strand = Plus / Minus

                                                                        
Query: 36   tgtacaaataaacatggaacattcacaggccctggcaggaaacagtcaacaaatatggct 95
            |||||||||||||| |||||||| ||||||| ||||||||| ||||||||||||||||||
Sbjct: 2443 tgtacaaataaacaaggaacattaacaggccttggcaggaagcagtcaacaaatatggct 2384
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>dbj|AK072244.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023003F07, full
            insert sequence
          Length = 3941

 Score = 87.7 bits (44), Expect = 7e-15
 Identities = 56/60 (93%)
 Strand = Plus / Minus

                                                                        
Query: 36   tgtacaaataaacatggaacattcacaggccctggcaggaaacagtcaacaaatatggct 95
            |||||||||||||| |||||||| ||||||| ||||||||| ||||||||||||||||||
Sbjct: 3825 tgtacaaataaacaaggaacattaacaggccttggcaggaagcagtcaacaaatatggct 3766
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>gb|AY103798.1| Zea mays PCO149393 mRNA sequence
          Length = 988

 Score = 79.8 bits (40), Expect = 2e-12
 Identities = 40/40 (100%)
 Strand = Plus / Minus

                                                   
Query: 34  tatgtacaaataaacatggaacattcacaggccctggcag 73
           ||||||||||||||||||||||||||||||||||||||||
Sbjct: 896 tatgtacaaataaacatggaacattcacaggccctggcag 857
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>emb|AL355852.23| Human DNA sequence from clone RP11-403E24 on chromosome X Contains gene
             FLJ39827 and a CpG island, complete sequence
          Length = 128765

 Score = 48.1 bits (24), Expect = 0.006
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                     
Query: 38    tacaaataaacatggaacattcac 61
             ||||||||||||||||||||||||
Sbjct: 40824 tacaaataaacatggaacattcac 40801
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>emb|Z83836.2|HS111J24 Human DNA sequence from clone RP1-111J24 on chromosome 22 Contains
             GSSs, complete sequence
          Length = 119008

 Score = 44.1 bits (22), Expect = 0.098
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 40    caaataaacatggaacattcac 61
             ||||||||||||||||||||||
Sbjct: 76332 caaataaacatggaacattcac 76311
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>gb|AC113761.6| Rattus norvegicus X BAC CH230-91H16 (Children's Hospital Oakland Research
              Institute) complete sequence
          Length = 232930

 Score = 44.1 bits (22), Expect = 0.098
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 10     cctttctcttaataaaacagaa 31
              ||||||||||||||||||||||
Sbjct: 157884 cctttctcttaataaaacagaa 157905
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>gb|AC119825.11| Mus musculus chromosome 3, clone RP23-358O22, complete sequence
          Length = 205291

 Score = 42.1 bits (21), Expect = 0.39
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 20     aataaaacagaaagtatgtac 40
              |||||||||||||||||||||
Sbjct: 193592 aataaaacagaaagtatgtac 193572
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>gb|AC096623.31| Mus musculus strain 129/SvJ chromosome 3 clone mgs1-30a13, complete
              sequence
          Length = 196824

 Score = 42.1 bits (21), Expect = 0.39
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 20     aataaaacagaaagtatgtac 40
              |||||||||||||||||||||
Sbjct: 163854 aataaaacagaaagtatgtac 163834
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>emb|CR937052.2| Rattus norvegicus chromosome 1 BAC CH230-445C15, complete sequence
          Length = 151854

 Score = 40.1 bits (20), Expect = 1.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 11     ctttctcttaataaaacaga 30
              ||||||||||||||||||||
Sbjct: 118164 ctttctcttaataaaacaga 118145
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>emb|AL024474.1|HS91J24 Human DNA sequence from clone RP1-91J24 on chromosome 6q24 Contains a
             pseudogene similar to single-stranded DNA-binding protein,
             the 5' end of the UTRN gene for utrophin
             (dystrophin-related protein) (DRP, DRP1, DMDL) and a
             putative novel gene. Contains a CpG island, complete
             sequence
          Length = 95267

 Score = 40.1 bits (20), Expect = 1.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 20    aataaaacagaaagtatgta 39
             ||||||||||||||||||||
Sbjct: 50667 aataaaacagaaagtatgta 50648
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>gb|CP000083.1| Colwellia psychrerythraea 34H, complete genome
          Length = 5373180

 Score = 40.1 bits (20), Expect = 1.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 11      ctttctcttaataaaacaga 30
               ||||||||||||||||||||
Sbjct: 2976120 ctttctcttaataaaacaga 2976139
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>emb|BX510316.11| Zebrafish DNA sequence from clone CH211-194J3 in linkage group 12,
             complete sequence
          Length = 189720

 Score = 40.1 bits (20), Expect = 1.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 21    ataaaacagaaagtatgtac 40
             ||||||||||||||||||||
Sbjct: 54118 ataaaacagaaagtatgtac 54137
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>gb|AC087368.7| Homo sapiens chromosome 8, clone RP11-711G22, complete sequence
          Length = 185315

 Score = 40.1 bits (20), Expect = 1.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 9      tcctttctcttaataaaaca 28
              ||||||||||||||||||||
Sbjct: 182354 tcctttctcttaataaaaca 182335
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>gb|AC009093.10| Homo sapiens chromosome 16 clone RP11-426C22, complete sequence
          Length = 207997

 Score = 40.1 bits (20), Expect = 1.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 41     aaataaacatggaacattca 60
              ||||||||||||||||||||
Sbjct: 140817 aaataaacatggaacattca 140836
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>emb|BX248308.11| Zebrafish DNA sequence from clone DKEY-247M21 in linkage group 21,
             complete sequence
          Length = 171606

 Score = 40.1 bits (20), Expect = 1.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 21    ataaaacagaaagtatgtac 40
             ||||||||||||||||||||
Sbjct: 23310 ataaaacagaaagtatgtac 23291
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>gb|AC009901.6|AC009901 Homo sapiens chromosome 8, clone RP11-98H4, complete sequence
          Length = 151966

 Score = 40.1 bits (20), Expect = 1.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 9   tcctttctcttaataaaaca 28
           ||||||||||||||||||||
Sbjct: 781 tcctttctcttaataaaaca 762
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
               sequence
          Length = 30731886

 Score = 40.1 bits (20), Expect = 1.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 8       ttcctttctcttaataaaacagaa 31
               ||||||||| ||||||||||||||
Sbjct: 4873655 ttcctttcttttaataaaacagaa 4873632
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>gb|AC138512.4| Homo sapiens chromosome 16 clone RP11-93B18, complete sequence
          Length = 159064

 Score = 40.1 bits (20), Expect = 1.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 41     aaataaacatggaacattca 60
              ||||||||||||||||||||
Sbjct: 113198 aaataaacatggaacattca 113179
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>gb|AC092630.3| Homo sapiens BAC clone RP11-321C18 from 2, complete sequence
          Length = 185947

 Score = 40.1 bits (20), Expect = 1.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 55    cattcacaggccctggcaggaaac 78
             |||||||||| |||||||||||||
Sbjct: 30892 cattcacaggtcctggcaggaaac 30915
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>gb|AC134312.3| Homo sapiens chromosome 16 clone RP11-863P13, complete sequence
          Length = 205610

 Score = 40.1 bits (20), Expect = 1.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 41     aaataaacatggaacattca 60
              ||||||||||||||||||||
Sbjct: 177456 aaataaacatggaacattca 177475
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>gb|AC009297.4| Homo sapiens BAC clone RP11-3E14 from 2, complete sequence
          Length = 91745

 Score = 40.1 bits (20), Expect = 1.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 3     tagcattcctttctcttaataaaa 26
             |||||||| |||||||||||||||
Sbjct: 39487 tagcattcttttctcttaataaaa 39510
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>dbj|AP003510.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0528E04
          Length = 170701

 Score = 40.1 bits (20), Expect = 1.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 8     ttcctttctcttaataaaacagaa 31
             ||||||||| ||||||||||||||
Sbjct: 61138 ttcctttcttttaataaaacagaa 61115
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>emb|BX248743.2| Zebrafish DNA sequence from clone CH211-202P11, complete sequence
          Length = 46051

 Score = 40.1 bits (20), Expect = 1.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 21    ataaaacagaaagtatgtac 40
             ||||||||||||||||||||
Sbjct: 22821 ataaaacagaaagtatgtac 22802
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>emb|AL808014.8| Mouse DNA sequence from clone RP23-142A6 on chromosome X, complete
             sequence
          Length = 138307

 Score = 40.1 bits (20), Expect = 1.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 33    gtatgtacaaataaacatggaaca 56
             ||||| ||||||||||||||||||
Sbjct: 96914 gtatgaacaaataaacatggaaca 96891
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>emb|Z57405.1|HS175B11R H.sapiens CpG island DNA genomic Mse1 fragment, clone 175b11,
           reverse read cpg175b11.rt1a
          Length = 152

 Score = 40.1 bits (20), Expect = 1.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 20  aataaaacagaaagtatgta 39
           ||||||||||||||||||||
Sbjct: 136 aataaaacagaaagtatgta 117
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>emb|AL133502.4|CNS01DVA Human chromosome 14 DNA sequence BAC R-180L10 of library RPCI-11 from
             chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 173292

 Score = 40.1 bits (20), Expect = 1.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 70    gcaggaaacagtcaacaaat 89
             ||||||||||||||||||||
Sbjct: 65135 gcaggaaacagtcaacaaat 65154
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>emb|AJ495848.1|PLI495848 Paracentrotus lividus partial dnmt1 gene for DNA methyltransferase,
            exons 13-15
          Length = 5059

 Score = 40.1 bits (20), Expect = 1.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 13   ttctcttaataaaacagaaa 32
            ||||||||||||||||||||
Sbjct: 1604 ttctcttaataaaacagaaa 1585
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>emb|AL772296.6| Mouse DNA sequence from clone RP23-66O9 on chromosome 4, complete
             sequence
          Length = 191662

 Score = 40.1 bits (20), Expect = 1.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 11    ctttctcttaataaaacaga 30
             ||||||||||||||||||||
Sbjct: 23225 ctttctcttaataaaacaga 23206
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>gb|AC150887.4| Bos taurus  BAC CH240-483B20 (Children's Hospital Oakland Research
              Institute Bovine BAC Library (male)) complete sequence
          Length = 157543

 Score = 38.2 bits (19), Expect = 6.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 65     ccctggcaggaaacagtca 83
              |||||||||||||||||||
Sbjct: 109733 ccctggcaggaaacagtca 109751
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>ref|NM_003617.2| Homo sapiens regulator of G-protein signalling 5 (RGS5), mRNA
          Length = 5848

 Score = 38.2 bits (19), Expect = 6.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 39   acaaataaacatggaacat 57
            |||||||||||||||||||
Sbjct: 3850 acaaataaacatggaacat 3832
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>gb|AC005161.1| Homo sapiens BAC clone CTB-17K18 from 7, complete sequence
          Length = 95742

 Score = 38.2 bits (19), Expect = 6.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 38   tacaaataaacatggaaca 56
            |||||||||||||||||||
Sbjct: 3219 tacaaataaacatggaaca 3201
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>gb|AC123820.4| Mus musculus BAC clone RP23-461O5 from chromosome 7, complete sequence
          Length = 204757

 Score = 38.2 bits (19), Expect = 6.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 33    gtatgtacaaataaacatg 51
             |||||||||||||||||||
Sbjct: 41587 gtatgtacaaataaacatg 41569
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>gb|AC122385.2| Mus musculus BAC clone RP24-72B22 from chromosome 1, complete sequence
          Length = 178821

 Score = 38.2 bits (19), Expect = 6.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 1     gctagcattcctttctctt 19
             |||||||||||||||||||
Sbjct: 59393 gctagcattcctttctctt 59411
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>gb|AC092423.5| Homo sapiens BAC clone RP13-492C18 from 7, complete sequence
          Length = 24935

 Score = 38.2 bits (19), Expect = 6.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 30    aaagtatgtacaaataaac 48
             |||||||||||||||||||
Sbjct: 16536 aaagtatgtacaaataaac 16518
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>gb|AC162788.2| Mus musculus chromosome 1, clone RP23-79C14, complete sequence
          Length = 136158

 Score = 38.2 bits (19), Expect = 6.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 8     ttcctttctcttaataaaa 26
             |||||||||||||||||||
Sbjct: 44497 ttcctttctcttaataaaa 44515
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>emb|AL583850.5| Human DNA sequence from clone RP11-430G6 on chromosome 1 Contains the
              RGS4 gene for regulator of G-protein signalling 4 and the
              3' end of the RGS5 gene for regulator of G-protein
              signalling 5, complete sequence
          Length = 165329

 Score = 38.2 bits (19), Expect = 6.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 39     acaaataaacatggaacat 57
              |||||||||||||||||||
Sbjct: 157035 acaaataaacatggaacat 157053
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>gb|AF173551.1| Homo sapiens MSTP106 mRNA, complete cds
          Length = 2317

 Score = 38.2 bits (19), Expect = 6.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 39  acaaataaacatggaacat 57
           |||||||||||||||||||
Sbjct: 326 acaaataaacatggaacat 308
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>gb|AF172821.1| Homo sapiens MSTP092 (MST092) mRNA, complete cds
          Length = 2043

 Score = 38.2 bits (19), Expect = 6.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                             
Query: 39 acaaataaacatggaacat 57
          |||||||||||||||||||
Sbjct: 32 acaaataaacatggaacat 14
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>gb|AC122091.6| Rattus norvegicus 9 BAC CH230-375L16 (Children's Hospital Oakland
             Research Institute) complete sequence
          Length = 231967

 Score = 38.2 bits (19), Expect = 6.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 27    cagaaagtatgtacaaata 45
             |||||||||||||||||||
Sbjct: 20138 cagaaagtatgtacaaata 20120



 Score = 38.2 bits (19), Expect = 6.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 27    cagaaagtatgtacaaata 45
             |||||||||||||||||||
Sbjct: 20088 cagaaagtatgtacaaata 20070
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>emb|AL158812.10| Human DNA sequence from clone RP11-157E11 on chromosome 13, complete
             sequence
          Length = 173538

 Score = 38.2 bits (19), Expect = 6.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 14    tctcttaataaaacagaaa 32
             |||||||||||||||||||
Sbjct: 77636 tctcttaataaaacagaaa 77654
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>emb|AL122006.11|HSJ730H16 Human DNA sequence from clone RP4-730H16 on chromosome 1p13.1-13.3,
             complete sequence
          Length = 151391

 Score = 38.2 bits (19), Expect = 6.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 1     gctagcattcctttctctt 19
             |||||||||||||||||||
Sbjct: 81817 gctagcattcctttctctt 81835
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>emb|AL035455.30|HS1018E9 Human DNA sequence from clone RP5-1018E9 on chromosome 20q13.31-13.33
             Contains the VAPB gene for VAMP (vesicle-associated
             membrane protein)-associated protein B and C, the RAB22A
             gene for a GTP-binding protein, a novel gene the 5' end of
             the PPP4R1L gene for protein phosphatase 4 regulatory
             subunit 1-like and three CpG islands, complete sequence
          Length = 148667

 Score = 38.2 bits (19), Expect = 6.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 40    caaataaacatggaacatt 58
             |||||||||||||||||||
Sbjct: 25641 caaataaacatggaacatt 25623
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>emb|Z99112.2|BSUB0009 Bacillus subtilis complete genome (section 9 of 21): from 1602883 to
              1807145
          Length = 204263

 Score = 38.2 bits (19), Expect = 6.0
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                     
Query: 29     gaaagtatgtacaaataaacatg 51
              ||||||||||||||| |||||||
Sbjct: 151984 gaaagtatgtacaaagaaacatg 151962
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>emb|BX908740.5| Zebrafish DNA sequence from clone DKEY-88E10 in linkage group 1,
             complete sequence
          Length = 90443

 Score = 38.2 bits (19), Expect = 6.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 25    aacagaaagtatgtacaaa 43
             |||||||||||||||||||
Sbjct: 80170 aacagaaagtatgtacaaa 80152
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>gb|AC146469.23| Pan troglodytes clone rp43-45g24, complete sequence
          Length = 191684

 Score = 38.2 bits (19), Expect = 6.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 63    ggccctggcaggaaacagt 81
             |||||||||||||||||||
Sbjct: 67867 ggccctggcaggaaacagt 67885
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>gb|AC106806.2| Homo sapiens chromosome 5 clone RP11-510I6, complete sequence
          Length = 162485

 Score = 38.2 bits (19), Expect = 6.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 41     aaataaacatggaacattc 59
              |||||||||||||||||||
Sbjct: 127966 aaataaacatggaacattc 127948
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>gb|AC091154.3| Homo sapiens chromosome 17, clone RP11-750B16, complete sequence
          Length = 175783

 Score = 38.2 bits (19), Expect = 6.0
 Identities = 25/27 (92%)
 Strand = Plus / Plus

                                         
Query: 21     ataaaacagaaagtatgtacaaataaa 47
              ||||||||||||  |||||||||||||
Sbjct: 122592 ataaaacagaaataatgtacaaataaa 122618
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>dbj|AK031178.1| Mus musculus 13 days embryo forelimb cDNA, RIKEN full-length
          enriched library, clone:5930422J03
          product:tolloid-like, full insert sequence
          Length = 3270

 Score = 38.2 bits (19), Expect = 6.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                             
Query: 59 cacaggccctggcaggaaa 77
          |||||||||||||||||||
Sbjct: 20 cacaggccctggcaggaaa 2
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>gb|AC018470.11| Homo sapiens BAC clone RP11-572N21 from 2, complete sequence
          Length = 174437

 Score = 38.2 bits (19), Expect = 6.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 31     aagtatgtacaaataaaca 49
              |||||||||||||||||||
Sbjct: 132767 aagtatgtacaaataaaca 132785
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>gb|AC155725.3| Mus musculus 6 BAC RP24-231N5 (Roswell Park Cancer Institute (C57BL/6J
             Male) Mouse BAC Library) complete sequence
          Length = 167534

 Score = 38.2 bits (19), Expect = 6.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 59    cacaggccctggcaggaaa 77
             |||||||||||||||||||
Sbjct: 92633 cacaggccctggcaggaaa 92651
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>gb|AC104076.5| Homo sapiens BAC clone RP11-397C2 from 2, complete sequence
          Length = 174622

 Score = 38.2 bits (19), Expect = 6.0
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                    
Query: 69    ggcaggaaacagtcaacaaatat 91
             |||| ||||||||||||||||||
Sbjct: 47241 ggcaagaaacagtcaacaaatat 47263
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>gb|AC009429.3|AC009429 Homo sapiens, clone RP11-45M17, complete sequence
          Length = 160417

 Score = 38.2 bits (19), Expect = 6.0
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                     
Query: 11     ctttctcttaataaaacagaaag 33
              |||||||||||||||||| ||||
Sbjct: 100924 ctttctcttaataaaacaaaaag 100902
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>dbj|AK173764.1| Ciona intestinalis cDNA, clone:citb003n13, full insert sequence
          Length = 1298

 Score = 38.2 bits (19), Expect = 6.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                             
Query: 38 tacaaataaacatggaaca 56
          |||||||||||||||||||
Sbjct: 32 tacaaataaacatggaaca 14
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>emb|AL670238.5| Mouse DNA sequence from clone RP23-16J5 on chromosome X, complete
              sequence
          Length = 223392

 Score = 38.2 bits (19), Expect = 6.0
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                     
Query: 72     aggaaacagtcaacaaatatggc 94
              |||||||| ||||||||||||||
Sbjct: 115222 aggaaacaatcaacaaatatggc 115200
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>emb|BX649545.14| Zebrafish DNA sequence from clone CH211-9N13 in linkage group 19,
              complete sequence
          Length = 169802

 Score = 38.2 bits (19), Expect = 6.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 18     ttaataaaacagaaagtat 36
              |||||||||||||||||||
Sbjct: 127309 ttaataaaacagaaagtat 127291
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>gb|AC120438.9| Mus musculus chromosome 7, clone RP24-572G2, complete sequence
          Length = 169442

 Score = 38.2 bits (19), Expect = 6.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 33    gtatgtacaaataaacatg 51
             |||||||||||||||||||
Sbjct: 40002 gtatgtacaaataaacatg 40020
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>emb|BX537427.1|HSM805729 Homo sapiens mRNA; cDNA DKFZp686G1211 (from clone DKFZp686G1211);
            complete cds
          Length = 5683

 Score = 38.2 bits (19), Expect = 6.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 39   acaaataaacatggaacat 57
            |||||||||||||||||||
Sbjct: 3685 acaaataaacatggaacat 3667
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>emb|BX005272.6| Zebrafish DNA sequence from clone DKEY-23D7, complete sequence
          Length = 215838

 Score = 38.2 bits (19), Expect = 6.0
 Identities = 25/27 (92%)
 Strand = Plus / Minus

                                        
Query: 23    aaaacagaaagtatgtacaaataaaca 49
             ||||||| ||||||||||||| |||||
Sbjct: 77647 aaaacaggaagtatgtacaaaaaaaca 77621
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>gb|AC133083.3| Mus musculus BAC clone RP24-342G5 from 12, complete sequence
          Length = 191265

 Score = 38.2 bits (19), Expect = 6.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 1     gctagcattcctttctctt 19
             |||||||||||||||||||
Sbjct: 86698 gctagcattcctttctctt 86716
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>gb|AC140416.2| Mus musculus BAC clone RP24-347A16 from 6, complete sequence
          Length = 188390

 Score = 38.2 bits (19), Expect = 6.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 14     tctcttaataaaacagaaa 32
              |||||||||||||||||||
Sbjct: 137181 tctcttaataaaacagaaa 137199
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>gb|BC029357.1| Homo sapiens regulator of G-protein signalling 5, mRNA (cDNA clone
           IMAGE:4337776)
          Length = 1490

 Score = 38.2 bits (19), Expect = 6.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 39  acaaataaacatggaacat 57
           |||||||||||||||||||
Sbjct: 255 acaaataaacatggaacat 237


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,725,371
Number of Sequences: 3902068
Number of extensions: 1725371
Number of successful extensions: 134525
Number of sequences better than 10.0: 64
Number of HSP's better than 10.0 without gapping: 64
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 134299
Number of HSP's gapped (non-prelim): 226
length of query: 129
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 108
effective length of database: 17,151,101,840
effective search space: 1852318998720
effective search space used: 1852318998720
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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