>CPRF1_PETCR (Q99089) Common plant regulatory factor CPRF-1|
          Length = 411

 Score = 29.3 bits (64), Expect = 2.8
 Identities = 17/47 (36%), Positives = 24/47 (51%)
 Frame = +2

Query: 83  LYNQNGAVIHVQYRAEAEHALNQPLPADHQKKNGTGRTTNASSYVKN 223
           L N N  ++ V   A+AE A +  L  +++KK  T  T N  S V N
Sbjct: 325 LTNDNSRLLEVMKNAQAERAADVGLGNNNEKKASTLSTANLLSRVDN 371

>DCR1_DROME (Q9VCU9) Endoribonuclease Dcr-1 (EC 3.1.26.-) (Protein dicer-1)|
          Length = 2249

 Score = 28.9 bits (63), Expect = 3.7
 Identities = 19/62 (30%), Positives = 28/62 (45%), Gaps = 2/62 (3%)
 Frame = +1

Query: 34  DRNDNRVHRKYTQNPLSI*--PKWSGNSRTVQSGSRTCTKPTTTRRSPKEKRDGTDNQCI 207
           DR  NR   + T  P      PK S  + T Q  +R   +   TRR  ++  DG+D  C 
Sbjct: 439 DRQTNRSAARVTPTPTPAHAKPKPSSGANTAQPRTR---RRVYTRRHHRDHNDGSDTLCA 495

Query: 208 IV 213
           ++
Sbjct: 496 LI 497

>SCE3_SCHPO (O14369) Probable RNA-binding protein sce3|
          Length = 388

 Score = 27.7 bits (60), Expect = 8.3
 Identities = 18/74 (24%), Positives = 32/74 (43%)
 Frame = +1

Query: 1   EKLRGDFIEWMDRNDNRVHRKYTQNPLSI*PKWSGNSRTVQSGSRTCTKPTTTRRSPKEK 180
           +++R +  EW+ R          +  L++ P+ S N  T  + S T T  +  +R P   
Sbjct: 218 DRVREEPREWVRRGPLPPRESSERPRLNLKPRSSSNVNTEATPSATTTTSSKPKRDPFGG 277

Query: 181 RDGTDNQCIIVRQE 222
               DN  ++ R E
Sbjct: 278 AKPVDNTSVLQRVE 291

>POL4_DROME (P10394) Retrovirus-related Pol polyprotein from transposon 412|
            [Includes: Protease (EC 3.4.23.-); Reverse transcriptase
            (EC 2.7.7.49); Endonuclease]
          Length = 1237

 Score = 27.7 bits (60), Expect = 8.3
 Identities = 15/54 (27%), Positives = 27/54 (50%)
 Frame = +2

Query: 20   LLNGWTEMIIEYTENIHKILSLYNQNGAVIHVQYRAEAEHALNQPLPADHQKKN 181
            L+ G T  + ++   +H I  +YN +      +YR E  +A  + L   H++KN
Sbjct: 1114 LVFGRTSNLPKHFNKLHSIEPIYNIDDYAKESKYRLEVAYARARKLLEAHKEKN 1167


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 34,761,832
Number of Sequences: 219361
Number of extensions: 579697
Number of successful extensions: 1661
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1642
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1661
length of database: 80,573,946
effective HSP length: 54
effective length of database: 68,728,452
effective search space used: 1649482848
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)