ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart16a04
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_467091.1| Oryza sativa (japonica cultivar-group), mRNA 48 0.012
2dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 48 0.012
3dbj|AP002485.2| Oryza sativa (japonica cultivar-group) genomic D... 48 0.012
4dbj|AK062922.1| Oryza sativa (japonica cultivar-group) cDNA clon... 48 0.012
5emb|AJ307662.1|OSA307662 Oryza sativa genomic DNA fragment, chro... 48 0.012
6gb|AC092916.6| Homo sapiens 3 BAC RP11-615J4 (Roswell Park Cance... 42 0.77
7gb|AY938407.1| Uncultured eukaryote clone ENI47296.00339 18S rib... 42 0.77
8gb|AY938380.1| Uncultured eukaryote clone ENI47296.00298 18S rib... 42 0.77
9gb|AY938362.1| Uncultured eukaryote clone ENI47296.00256 18S rib... 42 0.77
10gb|AY938336.1| Uncultured eukaryote clone ENI47296.00208 18S rib... 42 0.77
11gb|AY938304.1| Uncultured eukaryote clone ENI47296.00151 18S rib... 42 0.77
12gb|AY938212.1| Uncultured eukaryote clone ENI42482.00364 18S rib... 42 0.77
13gb|AY938060.1| Uncultured eukaryote clone ENI42482.00172 18S rib... 42 0.77
14gb|AY937894.1| Uncultured eukaryote clone ENI40076.00794 18S rib... 42 0.77
15gb|AY937836.1| Uncultured eukaryote clone ENI40076.00722 18S rib... 42 0.77
16gb|AY937612.1| Uncultured eukaryote clone ENI40076.00315 18S rib... 42 0.77
17gb|AY937581.1| Uncultured eukaryote clone ENI40076.00252 18S rib... 42 0.77
18dbj|AP004975.1| Lotus japonicus genomic DNA, chromosome 5, clone... 42 0.77
19emb|AJ276414.1|AAN276414 Artemisia annua partial gASC23 gene for... 40 3.0
20gb|AC012444.9| Homo sapiens BAC clone RP11-41C17 from 2, complet... 40 3.0 
>ref|XM_467091.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 404

 Score = 48.1 bits (24), Expect = 0.012
 Identities = 41/46 (89%), Gaps = 3/46 (6%)
 Strand = Plus / Minus

                                                         
Query: 188 ggacggacaaccaatgcatcatcgtacgtcaagaatcgatcgatcg 233
           |||| |||||||||||||||   |||| ||||||||||||||||||
Sbjct: 226 ggactgacaaccaatgcatc---gtacatcaagaatcgatcgatcg 184



 Score = 40.1 bits (20), Expect = 3.0
 Identities = 39/44 (88%), Gaps = 1/44 (2%)
 Strand = Plus / Minus

                                                       
Query: 53  tacaccgaaaatatacacaaaatcctctctctatataaccaaaa 96
           |||||| ||||||||||| ||||| || ||||||| ||||||||
Sbjct: 362 tacaccaaaaatatacac-aaatcttccctctatagaaccaaaa 320
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 48.1 bits (24), Expect = 0.012
 Identities = 41/46 (89%), Gaps = 3/46 (6%)
 Strand = Plus / Minus

                                                              
Query: 188      ggacggacaaccaatgcatcatcgtacgtcaagaatcgatcgatcg 233
                |||| |||||||||||||||   |||| ||||||||||||||||||
Sbjct: 26356294 ggactgacaaccaatgcatc---gtacatcaagaatcgatcgatcg 26356252



 Score = 40.1 bits (20), Expect = 3.0
 Identities = 39/44 (88%), Gaps = 1/44 (2%)
 Strand = Plus / Minus

                                                            
Query: 53       tacaccgaaaatatacacaaaatcctctctctatataaccaaaa 96
                |||||| ||||||||||| ||||| || ||||||| ||||||||
Sbjct: 26356430 tacaccaaaaatatacac-aaatcttccctctatagaaccaaaa 26356388
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>dbj|AP002485.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:P0491E01
          Length = 136150

 Score = 48.1 bits (24), Expect = 0.012
 Identities = 41/46 (89%), Gaps = 3/46 (6%)
 Strand = Plus / Minus

                                                           
Query: 188   ggacggacaaccaatgcatcatcgtacgtcaagaatcgatcgatcg 233
             |||| |||||||||||||||   |||| ||||||||||||||||||
Sbjct: 88646 ggactgacaaccaatgcatc---gtacatcaagaatcgatcgatcg 88604



 Score = 40.1 bits (20), Expect = 3.0
 Identities = 39/44 (88%), Gaps = 1/44 (2%)
 Strand = Plus / Minus

                                                         
Query: 53    tacaccgaaaatatacacaaaatcctctctctatataaccaaaa 96
             |||||| ||||||||||| ||||| || ||||||| ||||||||
Sbjct: 88782 tacaccaaaaatatacac-aaatcttccctctatagaaccaaaa 88740
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>dbj|AK062922.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-108-H08, full
           insert sequence
          Length = 404

 Score = 48.1 bits (24), Expect = 0.012
 Identities = 41/46 (89%), Gaps = 3/46 (6%)
 Strand = Plus / Minus

                                                         
Query: 188 ggacggacaaccaatgcatcatcgtacgtcaagaatcgatcgatcg 233
           |||| |||||||||||||||   |||| ||||||||||||||||||
Sbjct: 226 ggactgacaaccaatgcatc---gtacatcaagaatcgatcgatcg 184



 Score = 40.1 bits (20), Expect = 3.0
 Identities = 39/44 (88%), Gaps = 1/44 (2%)
 Strand = Plus / Minus

                                                       
Query: 53  tacaccgaaaatatacacaaaatcctctctctatataaccaaaa 96
           |||||| ||||||||||| ||||| || ||||||| ||||||||
Sbjct: 362 tacaccaaaaatatacac-aaatcttccctctatagaaccaaaa 320
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>emb|AJ307662.1|OSA307662 Oryza sativa genomic DNA fragment, chromosome 2
          Length = 339972

 Score = 48.1 bits (24), Expect = 0.012
 Identities = 41/46 (89%), Gaps = 3/46 (6%)
 Strand = Plus / Minus

                                                           
Query: 188   ggacggacaaccaatgcatcatcgtacgtcaagaatcgatcgatcg 233
             |||| |||||||||||||||   |||| ||||||||||||||||||
Sbjct: 79437 ggactgacaaccaatgcatc---gtacatcaagaatcgatcgatcg 79395



 Score = 40.1 bits (20), Expect = 3.0
 Identities = 39/44 (88%), Gaps = 1/44 (2%)
 Strand = Plus / Minus

                                                         
Query: 53    tacaccgaaaatatacacaaaatcctctctctatataaccaaaa 96
             |||||| ||||||||||| ||||| || ||||||| ||||||||
Sbjct: 79573 tacaccaaaaatatacac-aaatcttccctctatagaaccaaaa 79531
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>gb|AC092916.6| Homo sapiens 3 BAC RP11-615J4 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 132182

 Score = 42.1 bits (21), Expect = 0.77
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 60    aaaatatacacaaaatcctct 80
             |||||||||||||||||||||
Sbjct: 82570 aaaatatacacaaaatcctct 82550
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>gb|AY938407.1| Uncultured eukaryote clone ENI47296.00339 18S ribosomal RNA gene,
           partial sequence
          Length = 576

 Score = 42.1 bits (21), Expect = 0.77
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 145 aaaccaaccactacccgccga 165
           |||||||||||||||||||||
Sbjct: 49  aaaccaaccactacccgccga 29
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>gb|AY938380.1| Uncultured eukaryote clone ENI47296.00298 18S ribosomal RNA gene,
           partial sequence
          Length = 235

 Score = 42.1 bits (21), Expect = 0.77
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 145 aaaccaaccactacccgccga 165
           |||||||||||||||||||||
Sbjct: 43  aaaccaaccactacccgccga 23
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>gb|AY938362.1| Uncultured eukaryote clone ENI47296.00256 18S ribosomal RNA gene,
           partial sequence
          Length = 589

 Score = 42.1 bits (21), Expect = 0.77
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 145 aaaccaaccactacccgccga 165
           |||||||||||||||||||||
Sbjct: 49  aaaccaaccactacccgccga 29
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>gb|AY938336.1| Uncultured eukaryote clone ENI47296.00208 18S ribosomal RNA gene,
           partial sequence
          Length = 570

 Score = 42.1 bits (21), Expect = 0.77
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 145 aaaccaaccactacccgccga 165
           |||||||||||||||||||||
Sbjct: 46  aaaccaaccactacccgccga 26
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>gb|AY938304.1| Uncultured eukaryote clone ENI47296.00151 18S ribosomal RNA gene,
           partial sequence
          Length = 589

 Score = 42.1 bits (21), Expect = 0.77
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 145 aaaccaaccactacccgccga 165
           |||||||||||||||||||||
Sbjct: 49  aaaccaaccactacccgccga 29
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>gb|AY938212.1| Uncultured eukaryote clone ENI42482.00364 18S ribosomal RNA gene,
           partial sequence
          Length = 573

 Score = 42.1 bits (21), Expect = 0.77
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 145 aaaccaaccactacccgccga 165
           |||||||||||||||||||||
Sbjct: 49  aaaccaaccactacccgccga 29
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>gb|AY938060.1| Uncultured eukaryote clone ENI42482.00172 18S ribosomal RNA gene,
           partial sequence
          Length = 545

 Score = 42.1 bits (21), Expect = 0.77
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 145 aaaccaaccactacccgccga 165
           |||||||||||||||||||||
Sbjct: 49  aaaccaaccactacccgccga 29
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>gb|AY937894.1| Uncultured eukaryote clone ENI40076.00794 18S ribosomal RNA gene,
           partial sequence
          Length = 607

 Score = 42.1 bits (21), Expect = 0.77
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 145 aaaccaaccactacccgccga 165
           |||||||||||||||||||||
Sbjct: 49  aaaccaaccactacccgccga 29
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>gb|AY937836.1| Uncultured eukaryote clone ENI40076.00722 18S ribosomal RNA gene,
           partial sequence
          Length = 605

 Score = 42.1 bits (21), Expect = 0.77
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 145 aaaccaaccactacccgccga 165
           |||||||||||||||||||||
Sbjct: 45  aaaccaaccactacccgccga 25
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>gb|AY937612.1| Uncultured eukaryote clone ENI40076.00315 18S ribosomal RNA gene,
           partial sequence
          Length = 568

 Score = 42.1 bits (21), Expect = 0.77
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 145 aaaccaaccactacccgccga 165
           |||||||||||||||||||||
Sbjct: 47  aaaccaaccactacccgccga 27
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>gb|AY937581.1| Uncultured eukaryote clone ENI40076.00252 18S ribosomal RNA gene,
           partial sequence
          Length = 491

 Score = 42.1 bits (21), Expect = 0.77
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 145 aaaccaaccactacccgccga 165
           |||||||||||||||||||||
Sbjct: 44  aaaccaaccactacccgccga 24
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>dbj|AP004975.1| Lotus japonicus genomic DNA, chromosome 5, clone:LjT21J12, TM0158,
             complete sequence
          Length = 83377

 Score = 42.1 bits (21), Expect = 0.77
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 132   cagaacatgcactaaaccaac 152
             |||||||||||||||||||||
Sbjct: 13126 cagaacatgcactaaaccaac 13146
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>emb|AJ276414.1|AAN276414 Artemisia annua partial gASC23 gene for putative sesquiterpene
           cyclase, exons 1-3
          Length = 788

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 137 catgcactaaaccaaccact 156
           ||||||||||||||||||||
Sbjct: 380 catgcactaaaccaaccact 399
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>gb|AC012444.9| Homo sapiens BAC clone RP11-41C17 from 2, complete sequence
          Length = 176567

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 16    gactttattgaatggatgga 35
             ||||||||||||||||||||
Sbjct: 98729 gactttattgaatggatgga 98748


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,015,802
Number of Sequences: 3902068
Number of extensions: 2015802
Number of successful extensions: 34068
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 34018
Number of HSP's gapped (non-prelim): 45
length of query: 236
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 214
effective length of database: 17,147,199,772
effective search space: 3669500751208
effective search space used: 3669500751208
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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