ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart15h12
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|M36650.1|BLYGAPDH Barley glyceraldehyde-3-phosphate dehydroge... 367 1e-98
2ref|XM_506852.1| PREDICTED Oryza sativa (japonica cultivar-group... 46 0.052
3ref|XM_466582.1| Oryza sativa (japonica cultivar-group), mRNA 46 0.052
4dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 46 0.052
5dbj|AP005385.3| Oryza sativa (japonica cultivar-group) genomic D... 46 0.052
6dbj|AK099086.1| Oryza sativa (japonica cultivar-group) cDNA clon... 46 0.052
7dbj|AK062215.1| Oryza sativa (japonica cultivar-group) cDNA clon... 46 0.052
8ref|XM_614616.2| PREDICTED: Bos taurus similar to solute carrier... 42 0.81
9ref|XM_864288.1| PREDICTED: Bos taurus similar to solute carrier... 42 0.81
10emb|CR450741.5| Zebrafish DNA sequence from clone CH211-269F16 i... 42 0.81
11gb|DQ083193.1| Oryza sativa (indica cultivar-group) clone 8S4Eb0... 42 0.81
12dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 42 0.81
13emb|BX537129.6| Zebrafish DNA sequence from clone CH211-236I20 i... 42 0.81
14dbj|AP003248.4| Oryza sativa (japonica cultivar-group) genomic D... 42 0.81
15gb|AC008284.7| Drosophila melanogaster clone BACR03M22, complete... 40 3.2
16gb|AC099020.2| Drosophila melanogaster clone BACR30H01, complete... 40 3.2
17gb|AC124364.4| Mus musculus BAC clone RP24-538E16 from chromosom... 40 3.2
18gb|AC122519.4| Mus musculus BAC clone RP24-462C10 from chromosom... 40 3.2
19gb|AC110378.4| Mus musculus BAC clone RP24-193H8 from 6, complet... 40 3.2
20emb|AL606691.4|OSJN00081 Oryza sativa genomic DNA, chromosome 4,... 40 3.2
21gb|AC099017.1| Drosophila melanogaster, chromosome 2L, region 37... 40 3.2
22dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 40 3.2
23dbj|BA000004.3| Bacillus halodurans C-125 DNA, complete genome 40 3.2
24emb|AL442105.2| Oryza sativa genomic DNA, chromosome 4, BAC clon... 40 3.2
25gb|AE003751.3| Drosophila melanogaster chromosome 3R, section 89... 40 3.2
26gb|AE003663.4| Drosophila melanogaster chromosome 2L, section 72... 40 3.2
27gb|AC005128.1|AC005128 Drosophila melanogaster, chromosome 2L, r... 40 3.2
28emb|BX284664.8| Zebrafish DNA sequence from clone DKEY-7I23 in l... 40 3.2
29emb|AL591973.1| Listeria monocytogenes strain EGD, complete geno... 40 3.2
30gb|AC136008.5| Mus musculus BAC clone RP24-68J1 from 6, complete... 40 3.2
31gb|AE017262.2| Listeria monocytogenes str. 4b F2365, complete ge... 40 3.2 
>gb|M36650.1|BLYGAPDH Barley glyceraldehyde-3-phosphate dehydrogenase mRNA, 3' end
          Length = 1141

 Score =  367 bits (185), Expect = 1e-98
 Identities = 228/242 (94%), Gaps = 2/242 (0%)
 Strand = Plus / Minus

                                                                        
Query: 6    aacccatgacgatgagtgaaaataactcatgatttagttcaagcaagtacataataccac 65
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1141 aacccatgacgatgagtgaaaataactcatgatttagttcaagcaagtacataataccac 1082

                                                                        
Query: 66   caaaatgggagccgctaagctcaaccaaccatcaggatacatccaataaaagggnnnnnn 125
            ||||||| |||||||||||||||||||||||||||||| ||||||||||||||       
Sbjct: 1081 caaaatgtgagccgctaagctcaaccaaccatcaggat-catccaataaaaggttttttt 1023

                                                                        
Query: 126  nagttgccataattccatacaaaaatttattctcggaagagggtgtacactcttctcttc 185
             ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 1022 tagttgccataattccatacaaaaatttattctcggaagaggttgtacactcttctcttc 963

                                                                        
Query: 186  tctggggcaaaccacactcccctggatcttcatgctttggctcatttacttggggctgtg 245
            |||||||||||||||||| ||||| |||||||||||||||||||||||||||| ||||||
Sbjct: 962  tctggggcaaaccacact-ccctgtatcttcatgctttggctcatttacttggtgctgtg 904

              
Query: 246  ca 247
            ||
Sbjct: 903  ca 902
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>ref|XM_506852.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1791_B03.34 mRNA
          Length = 1460

 Score = 46.1 bits (23), Expect = 0.052
 Identities = 59/69 (85%), Gaps = 4/69 (5%)
 Strand = Plus / Minus

                                                                        
Query: 147  aaaatttattctcggaagagggtgtacactcttctcttctctggggcaaaccac-actcc 205
            ||||||||||||||||||||| |  |   ||| ||||||||||||||||| ||| |||||
Sbjct: 1323 aaaatttattctcggaagaggcttca---tctactcttctctggggcaaaacacaactcc 1267

                     
Query: 206  cctggatct 214
            |||| ||||
Sbjct: 1266 cctgtatct 1258
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>ref|XM_466582.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1456

 Score = 46.1 bits (23), Expect = 0.052
 Identities = 59/69 (85%), Gaps = 4/69 (5%)
 Strand = Plus / Minus

                                                                        
Query: 147  aaaatttattctcggaagagggtgtacactcttctcttctctggggcaaaccac-actcc 205
            ||||||||||||||||||||| |  |   ||| ||||||||||||||||| ||| |||||
Sbjct: 1339 aaaatttattctcggaagaggcttca---tctactcttctctggggcaaaacacaactcc 1283

                     
Query: 206  cctggatct 214
            |||| ||||
Sbjct: 1282 cctgtatct 1274
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 46.1 bits (23), Expect = 0.052
 Identities = 59/69 (85%), Gaps = 4/69 (5%)
 Strand = Plus / Minus

                                                                            
Query: 147      aaaatttattctcggaagagggtgtacactcttctcttctctggggcaaaccac-actcc 205
                ||||||||||||||||||||| |  |   ||| ||||||||||||||||| ||| |||||
Sbjct: 23549735 aaaatttattctcggaagaggcttca---tctactcttctctggggcaaaacacaactcc 23549679

                         
Query: 206      cctggatct 214
                |||| ||||
Sbjct: 23549678 cctgtatct 23549670
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>dbj|AP005385.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
              clone:OJ1791_B03
          Length = 166214

 Score = 46.1 bits (23), Expect = 0.052
 Identities = 59/69 (85%), Gaps = 4/69 (5%)
 Strand = Plus / Minus

                                                                          
Query: 147    aaaatttattctcggaagagggtgtacactcttctcttctctggggcaaaccac-actcc 205
              ||||||||||||||||||||| |  |   ||| ||||||||||||||||| ||| |||||
Sbjct: 115418 aaaatttattctcggaagaggcttca---tctactcttctctggggcaaaacacaactcc 115362

                       
Query: 206    cctggatct 214
              |||| ||||
Sbjct: 115361 cctgtatct 115353
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>dbj|AK099086.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023009G10, full
            insert sequence
          Length = 1460

 Score = 46.1 bits (23), Expect = 0.052
 Identities = 59/69 (85%), Gaps = 4/69 (5%)
 Strand = Plus / Minus

                                                                        
Query: 147  aaaatttattctcggaagagggtgtacactcttctcttctctggggcaaaccac-actcc 205
            ||||||||||||||||||||| |  |   ||| ||||||||||||||||| ||| |||||
Sbjct: 1323 aaaatttattctcggaagaggcttca---tctactcttctctggggcaaaacacaactcc 1267

                     
Query: 206  cctggatct 214
            |||| ||||
Sbjct: 1266 cctgtatct 1258
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>dbj|AK062215.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-047-A09, full
            insert sequence
          Length = 1455

 Score = 46.1 bits (23), Expect = 0.052
 Identities = 59/69 (85%), Gaps = 4/69 (5%)
 Strand = Plus / Minus

                                                                        
Query: 147  aaaatttattctcggaagagggtgtacactcttctcttctctggggcaaaccac-actcc 205
            ||||||||||||||||||||| |  |   ||| ||||||||||||||||| ||| |||||
Sbjct: 1338 aaaatttattctcggaagaggcttca---tctactcttctctggggcaaaacacaactcc 1282

                     
Query: 206  cctggatct 214
            |||| ||||
Sbjct: 1281 cctgtatct 1273
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>ref|XM_614616.2| PREDICTED: Bos taurus similar to solute carrier family 25 member 24
            isoform 2, transcript variant 2 (LOC534742), mRNA
          Length = 3261

 Score = 42.1 bits (21), Expect = 0.81
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 37   atttagttcaagcaagtacat 57
            |||||||||||||||||||||
Sbjct: 1695 atttagttcaagcaagtacat 1675
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>ref|XM_864288.1| PREDICTED: Bos taurus similar to solute carrier family 25 member 24
            isoform 2, transcript variant 3 (LOC534742), mRNA
          Length = 3324

 Score = 42.1 bits (21), Expect = 0.81
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 37   atttagttcaagcaagtacat 57
            |||||||||||||||||||||
Sbjct: 1758 atttagttcaagcaagtacat 1738
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>emb|CR450741.5| Zebrafish DNA sequence from clone CH211-269F16 in linkage group 24,
              complete sequence
          Length = 157603

 Score = 42.1 bits (21), Expect = 0.81
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 220    ctttggctcatttacttgggg 240
              |||||||||||||||||||||
Sbjct: 134299 ctttggctcatttacttgggg 134279
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>gb|DQ083193.1| Oryza sativa (indica cultivar-group) clone 8S4Eb01 mRNA sequence
          Length = 206

 Score = 42.1 bits (21), Expect = 0.81
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 147 aaaatttattctcggaagagg 167
           |||||||||||||||||||||
Sbjct: 38  aaaatttattctcggaagagg 18
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 42.1 bits (21), Expect = 0.81
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 175      ctcttctcttctctggggcaa 195
                |||||||||||||||||||||
Sbjct: 28719022 ctcttctcttctctggggcaa 28719042
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>emb|BX537129.6| Zebrafish DNA sequence from clone CH211-236I20 in linkage group 18,
             complete sequence
          Length = 166655

 Score = 42.1 bits (21), Expect = 0.81
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 220   ctttggctcatttacttgggg 240
             |||||||||||||||||||||
Sbjct: 11155 ctttggctcatttacttgggg 11175
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>dbj|AP003248.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0431H09
          Length = 166886

 Score = 42.1 bits (21), Expect = 0.81
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 175    ctcttctcttctctggggcaa 195
              |||||||||||||||||||||
Sbjct: 102096 ctcttctcttctctggggcaa 102116
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>gb|AC008284.7| Drosophila melanogaster clone BACR03M22, complete sequence
          Length = 161996

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 134    ataattccatacaaaaattt 153
              ||||||||||||||||||||
Sbjct: 114326 ataattccatacaaaaattt 114307
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>gb|AC099020.2| Drosophila melanogaster clone BACR30H01, complete sequence
          Length = 155557

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 16     gatgagtgaaaataactcat 35
              ||||||||||||||||||||
Sbjct: 143705 gatgagtgaaaataactcat 143686
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>gb|AC124364.4| Mus musculus BAC clone RP24-538E16 from chromosome 12, complete sequence
          Length = 177697

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 172    acactcttctcttctctggg 191
              ||||||||||||||||||||
Sbjct: 111397 acactcttctcttctctggg 111378
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>gb|AC122519.4| Mus musculus BAC clone RP24-462C10 from chromosome 6, complete sequence
          Length = 138242

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 168   gtgtacactcttctcttctc 187
             ||||||||||||||||||||
Sbjct: 25760 gtgtacactcttctcttctc 25741
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>gb|AC110378.4| Mus musculus BAC clone RP24-193H8 from 6, complete sequence
          Length = 166527

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 168    gtgtacactcttctcttctc 187
              ||||||||||||||||||||
Sbjct: 164747 gtgtacactcttctcttctc 164766
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>emb|AL606691.4|OSJN00081 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0060N03,
              complete sequence
          Length = 179798

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 133    cataattccatacaaaaatt 152
              ||||||||||||||||||||
Sbjct: 151831 cataattccatacaaaaatt 151850
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>gb|AC099017.1| Drosophila melanogaster, chromosome 2L, region 37D-37E, BAC clone
              BACR27M12, complete sequence
          Length = 157766

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 16     gatgagtgaaaataactcat 35
              ||||||||||||||||||||
Sbjct: 127254 gatgagtgaaaataactcat 127273
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 133      cataattccatacaaaaatt 152
                ||||||||||||||||||||
Sbjct: 30884310 cataattccatacaaaaatt 30884329
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>dbj|BA000004.3| Bacillus halodurans C-125 DNA, complete genome
          Length = 4202352

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 32      tcatgatttagttcaagcaagtac 55
               |||||||||||| |||||||||||
Sbjct: 2817665 tcatgatttagtacaagcaagtac 2817688
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>emb|AL442105.2| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0702G05, complete
             sequence
          Length = 134586

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 133   cataattccatacaaaaatt 152
             ||||||||||||||||||||
Sbjct: 60884 cataattccatacaaaaatt 60903
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>gb|AE003751.3| Drosophila melanogaster chromosome 3R, section 89 of 118 of the complete
              sequence
          Length = 307443

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 134    ataattccatacaaaaattt 153
              ||||||||||||||||||||
Sbjct: 248319 ataattccatacaaaaattt 248338
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>gb|AE003663.4| Drosophila melanogaster chromosome 2L, section 72 of 83 of the complete
             sequence
          Length = 290667

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 16    gatgagtgaaaataactcat 35
             ||||||||||||||||||||
Sbjct: 98873 gatgagtgaaaataactcat 98892
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>gb|AC005128.1|AC005128 Drosophila melanogaster, chromosome 2L, region 37F1-37F6, P1 clone
             DS08491, complete sequence
          Length = 60040

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 16    gatgagtgaaaataactcat 35
             ||||||||||||||||||||
Sbjct: 49018 gatgagtgaaaataactcat 48999
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>emb|BX284664.8| Zebrafish DNA sequence from clone DKEY-7I23 in linkage group 8,
             complete sequence
          Length = 228202

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 136   aattccatacaaaaatttat 155
             ||||||||||||||||||||
Sbjct: 28677 aattccatacaaaaatttat 28658
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>emb|AL591973.1| Listeria monocytogenes strain EGD, complete genome, segment 1/12
          Length = 200050

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 45    caagcaagtacataatacca 64
             ||||||||||||||||||||
Sbjct: 17524 caagcaagtacataatacca 17505
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>gb|AC136008.5| Mus musculus BAC clone RP24-68J1 from 6, complete sequence
          Length = 181220

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 168    gtgtacactcttctcttctc 187
              ||||||||||||||||||||
Sbjct: 169604 gtgtacactcttctcttctc 169585
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>gb|AE017262.2| Listeria monocytogenes str. 4b F2365, complete genome
          Length = 2905187

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 45    caagcaagtacataatacca 64
             ||||||||||||||||||||
Sbjct: 19606 caagcaagtacataatacca 19587


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,980,020
Number of Sequences: 3902068
Number of extensions: 2980020
Number of successful extensions: 135792
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 135658
Number of HSP's gapped (non-prelim): 132
length of query: 247
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 225
effective length of database: 17,147,199,772
effective search space: 3858119948700
effective search space used: 3858119948700
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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