>SAR1A_ARATH (O04834) GTP-binding protein SAR1A|
          Length = 193

 Score = 86.3 bits (212), Expect = 3e-17
 Identities = 39/42 (92%), Positives = 41/42 (97%)
 Frame = -2

Query: 459 TTGKGNVNLSDSNVRPLEVFMCSIVRKMGYGEGFKWMSQYIK 334
           TTGKG VNL+DSNVRPLEVFMCSIVRKMGYGEGFKW+SQYIK
Sbjct: 152 TTGKGKVNLTDSNVRPLEVFMCSIVRKMGYGEGFKWVSQYIK 193

>SAR2_LYCES (P52884) GTP-binding protein SAR2|
          Length = 193

 Score = 85.1 bits (209), Expect = 8e-17
 Identities = 37/42 (88%), Positives = 41/42 (97%)
 Frame = -2

Query: 459 TTGKGNVNLSDSNVRPLEVFMCSIVRKMGYGEGFKWMSQYIK 334
           TTGKGN+NL+ +NVRP+EVFMCSIVRKMGYGEGFKWMSQYIK
Sbjct: 152 TTGKGNINLAGTNVRPIEVFMCSIVRKMGYGEGFKWMSQYIK 193

>SAR1A_BRACM (O04266) GTP-binding protein SAR1A|
          Length = 193

 Score = 80.9 bits (198), Expect = 1e-15
 Identities = 37/42 (88%), Positives = 39/42 (92%)
 Frame = -2

Query: 459 TTGKGNVNLSDSNVRPLEVFMCSIVRKMGYGEGFKWMSQYIK 334
           TTGKG V+L  SNVRPLEVFMCSIVRKMGYGEGFKW+SQYIK
Sbjct: 152 TTGKGKVDLVGSNVRPLEVFMCSIVRKMGYGEGFKWLSQYIK 193

>SAR1B_ARATH (Q01474) GTP-binding protein SAR1B|
          Length = 193

 Score = 79.7 bits (195), Expect = 3e-15
 Identities = 36/41 (87%), Positives = 37/41 (90%)
 Frame = -2

Query: 459 TTGKGNVNLSDSNVRPLEVFMCSIVRKMGYGEGFKWMSQYI 337
           TTGKG V L DS VRPLEVFMCSIVRKMGYGEGFKW+SQYI
Sbjct: 152 TTGKGKVTLGDSGVRPLEVFMCSIVRKMGYGEGFKWLSQYI 192

>SAR1_TOBAC (P52885) GTP-binding protein SAR1|
          Length = 198

 Score = 76.6 bits (187), Expect = 3e-14
 Identities = 33/39 (84%), Positives = 38/39 (97%)
 Frame = -2

Query: 450 KGNVNLSDSNVRPLEVFMCSIVRKMGYGEGFKWMSQYIK 334
           +G VNL+DSNVRP+EVFMCSIVR+MGYGEGF+WMSQYIK
Sbjct: 160 RGKVNLADSNVRPVEVFMCSIVRQMGYGEGFRWMSQYIK 198

>SAR1B_BRACM (O04267) GTP-binding protein SAR1B|
          Length = 195

 Score = 73.2 bits (178), Expect = 3e-13
 Identities = 35/43 (81%), Positives = 37/43 (86%), Gaps = 2/43 (4%)
 Frame = -2

Query: 459 TTGKGNVNLS--DSNVRPLEVFMCSIVRKMGYGEGFKWMSQYI 337
           TTGKG V  +  DS VRPLEVFMCSIVRKMGYGEGFKW+SQYI
Sbjct: 152 TTGKGKVTTAGGDSGVRPLEVFMCSIVRKMGYGEGFKWLSQYI 194

>SAR1A_MOUSE (P36536) GTP-binding protein SAR1a|
          Length = 198

 Score = 71.2 bits (173), Expect = 1e-12
 Identities = 28/41 (68%), Positives = 36/41 (87%)
 Frame = -2

Query: 459 TTGKGNVNLSDSNVRPLEVFMCSIVRKMGYGEGFKWMSQYI 337
           TTGKGNV L + N RP+EVFMCS++++ GYGEGF+W+SQYI
Sbjct: 157 TTGKGNVTLKELNARPMEVFMCSVLKRQGYGEGFRWLSQYI 197

>SAR1A_HUMAN (Q9NR31) GTP-binding protein SAR1a (COPII-associated small GTPase)|
          Length = 198

 Score = 71.2 bits (173), Expect = 1e-12
 Identities = 28/41 (68%), Positives = 36/41 (87%)
 Frame = -2

Query: 459 TTGKGNVNLSDSNVRPLEVFMCSIVRKMGYGEGFKWMSQYI 337
           TTGKGNV L + N RP+EVFMCS++++ GYGEGF+W+SQYI
Sbjct: 157 TTGKGNVTLKELNARPMEVFMCSVLKRQGYGEGFRWLSQYI 197

>SAR1B_MOUSE (Q9CQC9) GTP-binding protein SAR1b|
          Length = 198

 Score = 70.5 bits (171), Expect = 2e-12
 Identities = 28/41 (68%), Positives = 37/41 (90%)
 Frame = -2

Query: 459 TTGKGNVNLSDSNVRPLEVFMCSIVRKMGYGEGFKWMSQYI 337
           TTGKG+V+L + N RPLEVFMCS++++ GYGEGF+WM+QYI
Sbjct: 157 TTGKGSVSLKELNARPLEVFMCSVLKRQGYGEGFRWMAQYI 197

>SAR1B_CRIGR (Q9QVY3) GTP-binding protein SAR1b (Sar1) (GTBPB)|
          Length = 198

 Score = 70.5 bits (171), Expect = 2e-12
 Identities = 28/41 (68%), Positives = 37/41 (90%)
 Frame = -2

Query: 459 TTGKGNVNLSDSNVRPLEVFMCSIVRKMGYGEGFKWMSQYI 337
           TTGKG+V+L + N RPLEVFMCS++++ GYGEGF+WM+QYI
Sbjct: 157 TTGKGSVSLKELNARPLEVFMCSVLKRQGYGEGFRWMAQYI 197

>SAR1B_HUMAN (Q9Y6B6) GTP-binding protein SAR1b (GTBPB)|
          Length = 198

 Score = 70.1 bits (170), Expect = 3e-12
 Identities = 27/41 (65%), Positives = 37/41 (90%)
 Frame = -2

Query: 459 TTGKGNVNLSDSNVRPLEVFMCSIVRKMGYGEGFKWMSQYI 337
           TTGKG+++L + N RPLEVFMCS++++ GYGEGF+WM+QYI
Sbjct: 157 TTGKGSISLKELNARPLEVFMCSVLKRQGYGEGFRWMAQYI 197

>SAR1_ASPNG (P52886) GTP-binding protein sarA|
          Length = 189

 Score = 59.3 bits (142), Expect = 5e-09
 Identities = 25/41 (60%), Positives = 32/41 (78%)
 Frame = -2

Query: 459 TTGKGNVNLSDSNVRPLEVFMCSIVRKMGYGEGFKWMSQYI 337
           TTGKG V L    +RP+EVFMCS+V + GYGEG +W+SQY+
Sbjct: 151 TTGKGKVPLE--GIRPIEVFMCSVVMRQGYGEGIRWLSQYV 189

>SAR1_SCHPO (Q01475) GTP-binding protein sar1|
          Length = 190

 Score = 58.5 bits (140), Expect = 8e-09
 Identities = 25/41 (60%), Positives = 33/41 (80%)
 Frame = -2

Query: 459 TTGKGNVNLSDSNVRPLEVFMCSIVRKMGYGEGFKWMSQYI 337
           TTGKG V+     +RP+EVFMCS+V + GYGEGFKW++QY+
Sbjct: 151 TTGKG-VSKPVPGIRPIEVFMCSVVLRQGYGEGFKWLAQYV 190

>SAR1_CAEEL (Q23445) GTP-binding protein SAR1|
          Length = 193

 Score = 57.4 bits (137), Expect = 2e-08
 Identities = 21/40 (52%), Positives = 33/40 (82%)
 Frame = -2

Query: 456 TGKGNVNLSDSNVRPLEVFMCSIVRKMGYGEGFKWMSQYI 337
           TGKG+V+ ++   RP+EVFMCS++++ GYGEG +W+ QY+
Sbjct: 154 TGKGDVSRNEMASRPMEVFMCSVLQRQGYGEGIRWLGQYL 193

>SAR1_TRIRE (P78976) GTP-binding protein SAR1|
          Length = 189

 Score = 55.8 bits (133), Expect = 5e-08
 Identities = 22/41 (53%), Positives = 31/41 (75%)
 Frame = -2

Query: 459 TTGKGNVNLSDSNVRPLEVFMCSIVRKMGYGEGFKWMSQYI 337
           TTGKG V L    +RP+E+FMCS+V + GYG+G +W+S Y+
Sbjct: 151 TTGKGRVQLE--GIRPIELFMCSVVMRQGYGDGIRWLSNYV 189

>SAR1_GIALA (Q8MQT8) GTP-binding protein Sar1|
          Length = 191

 Score = 53.5 bits (127), Expect = 2e-07
 Identities = 23/40 (57%), Positives = 31/40 (77%)
 Frame = -2

Query: 456 TGKGNVNLSDSNVRPLEVFMCSIVRKMGYGEGFKWMSQYI 337
           TGKG  NL  S+ RPLEVF CS++ + GY +GFKW+S+Y+
Sbjct: 153 TGKGGSNLR-SDQRPLEVFPCSVINRFGYTDGFKWLSKYL 191

>SAR1_PICPA (Q9P4C8) GTP-binding protein sar1|
          Length = 190

 Score = 53.5 bits (127), Expect = 2e-07
 Identities = 25/41 (60%), Positives = 29/41 (70%)
 Frame = -2

Query: 459 TTGKGNVNLSDSNVRPLEVFMCSIVRKMGYGEGFKWMSQYI 337
           TTGK  V L +   RPLEVF CSI  + GYGEG +W+SQYI
Sbjct: 151 TTGKDKVQLVEGQ-RPLEVFTCSIYLRQGYGEGIRWLSQYI 190

>SAR1_YEAST (P20606) GTP-binding protein SAR1|
          Length = 190

 Score = 45.4 bits (106), Expect = 7e-05
 Identities = 18/27 (66%), Positives = 23/27 (85%)
 Frame = -2

Query: 417 RPLEVFMCSIVRKMGYGEGFKWMSQYI 337
           RP+EVFMCS+V + GY E F+W+SQYI
Sbjct: 164 RPVEVFMCSVVMRNGYLEAFQWLSQYI 190

>RF1M_HUMAN (O75570) Peptide chain release factor 1, mitochondrial precursor|
           (MRF-1)
          Length = 445

 Score = 32.7 bits (73), Expect = 0.45
 Identities = 22/73 (30%), Positives = 38/73 (52%), Gaps = 11/73 (15%)
 Frame = -1

Query: 457 HWEGQRELVGFKRAAPGGVH--VQHRPQDGLWRRFQMDVPVHQVRSLPAV---------H 311
           HW  Q EL+ +  A  GG+H        DG+++  + +  +H+V+ +P V         H
Sbjct: 219 HW--QFELLNYTPADYGGLHHAAARISGDGVYKHLKYEGGIHRVQRIPEVGLSSRMQRIH 276

Query: 310 SGSIQVLVLCPSP 272
           +G++ V+VL P P
Sbjct: 277 TGTMSVIVL-PQP 288

>RF1_NOCFA (Q5Z0Z2) Peptide chain release factor 1 (RF-1)|
          Length = 356

 Score = 30.4 bits (67), Expect = 2.3
 Identities = 18/62 (29%), Positives = 33/62 (53%), Gaps = 6/62 (9%)
 Frame = -1

Query: 439 ELVGFKRAAPGGVHVQHRPQDGLWRRFQMDVPVHQVRSLPA------VHSGSIQVLVLCP 278
           +L G+K A    +  +   +DG+W RF+ +  VH+V+ +P       +H+ +  VL+  P
Sbjct: 150 DLGGYKEATLS-IKSRDAARDGVWSRFKFEGGVHRVQRVPVTESQGRIHTSAAGVLIY-P 207

Query: 277 SP 272
            P
Sbjct: 208 EP 209

>RL24_MYCGE (P47408) 50S ribosomal protein L24|
          Length = 108

 Score = 29.3 bits (64), Expect = 5.0
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = +3

Query: 132 SKITLHTNNQTNRRNHITRITVNLQAFPITKINLFLQ 242
           +K+T+H   Q N+R+  T  T      P+ K+ LF Q
Sbjct: 40  NKVTVHKKEQVNKRSKQTNPTTKEAPLPLNKLALFDQ 76


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 67,486,091
Number of Sequences: 219361
Number of extensions: 1390613
Number of successful extensions: 3473
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 3416
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3471
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2909956200
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)