ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart15h01 |
|---|---|
| Clone Library Name | barley_pub |
>PABP2_BOVIN (Q28165) Polyadenylate-binding protein 2 (Poly(A)-binding protein| 2) (PolyA-binding protein II) (PABII) (Polyadenylate-binding nuclear protein 1) (Nuclear poly(A)-binding protein 1) Length = 305 Score = 36.6 bits (83), Expect = 0.016 Identities = 21/70 (30%), Positives = 31/70 (44%) Frame = +1 Query: 145 ESLPVPVKPAATPGKKTGLGLPAPVADDDRAGCTSGAAGADAVVLEPELTEPDLHVRRGD 324 E P P P PG G G P +++ +G G G D + +PEL VR + Sbjct: 71 EEPPRPRAPPGAPGPGPGSGAPGNQEEEEESGLVEGDPG-DGAIEDPELEAIKARVREME 129 Query: 325 EQLGGLRRLE 354 E+ L+ L+ Sbjct: 130 EEAEKLKELQ 139
>PABP2_HUMAN (Q86U42) Polyadenylate-binding protein 2 (Poly(A)-binding protein| 2) (PolyA binding protein II) (PABII) (Polyadenylate-binding nuclear protein 1) (Nuclear poly(A)-binding protein 1) Length = 305 Score = 36.2 bits (82), Expect = 0.020 Identities = 21/70 (30%), Positives = 30/70 (42%) Frame = +1 Query: 145 ESLPVPVKPAATPGKKTGLGLPAPVADDDRAGCTSGAAGADAVVLEPELTEPDLHVRRGD 324 E P P P PG G G P +++ G G G D + +PEL VR + Sbjct: 71 EEPPRPRAPPGAPGPGPGSGAPGSQEEEEEPGLVEGDPG-DGAIEDPELEAIKARVREME 129 Query: 325 EQLGGLRRLE 354 E+ L+ L+ Sbjct: 130 EEAEKLKELQ 139
>PABP2_MOUSE (Q8CCS6) Polyadenylate-binding protein 2 (Poly(A)-binding protein| 2) (PolyA binding protein II) (PABII) (Polyadenylate-binding nuclear protein 1) (Nuclear poly(A)-binding protein 1) Length = 301 Score = 33.9 bits (76), Expect = 0.10 Identities = 20/70 (28%), Positives = 29/70 (41%) Frame = +1 Query: 145 ESLPVPVKPAATPGKKTGLGLPAPVADDDRAGCTSGAAGADAVVLEPELTEPDLHVRRGD 324 E P P P PG G G P +++ G G D + +PEL VR + Sbjct: 67 EEPPRPRAPPGAPGPGPGSGAPGSQEEEEEPGLVEADPG-DGAIEDPELEAIKARVREME 125 Query: 325 EQLGGLRRLE 354 E+ L+ L+ Sbjct: 126 EEAEKLKELQ 135
>WNK2_HUMAN (Q9Y3S1) Serine/threonine-protein kinase WNK2 (EC 2.7.11.1) (Protein| kinase with no lysine 2) (Protein kinase, lysine-deficient 2) Length = 2297 Score = 32.3 bits (72), Expect = 0.29 Identities = 22/49 (44%), Positives = 24/49 (48%) Frame = +1 Query: 151 LPVPVKPAATPGKKTGLGLPAPVADDDRAGCTSGAAGADAVVLEPELTE 297 LP PAATPG + LG PAP A D A + A VL P L E Sbjct: 1009 LPEQAAPAATPGSQILLGHPAPYAVDVAAQVPT-VPVPPAAVLSPPLPE 1056
>PCGF6_MOUSE (Q99NA9) Polycomb group RING finger protein 6 (RING finger protein| 134) (Mel18 and Bmi1-like RING finger) Length = 353 Score = 31.2 bits (69), Expect = 0.65 Identities = 19/73 (26%), Positives = 30/73 (41%) Frame = +1 Query: 100 TDLADNRRGNKITRVESLPVPVKPAATPGKKTGLGLPAPVADDDRAGCTSGAAGADAVVL 279 TD +N+R ++ R ++P P P P +PAP A ++ A A Sbjct: 6 TDATENKRASEAKRASAMPPP--PPPPPPISPPALIPAPAAGEEGPASLGQAGAAGCSRS 63 Query: 280 EPELTEPDLHVRR 318 P EP+ + R Sbjct: 64 RPPALEPERSLGR 76
>IF2_SYMTH (Q67P86) Translation initiation factor IF-2| Length = 1044 Score = 31.2 bits (69), Expect = 0.65 Identities = 17/35 (48%), Positives = 20/35 (57%) Frame = +1 Query: 157 VPVKPAATPGKKTGLGLPAPVADDDRAGCTSGAAG 261 VPVKPAA G K+GLGLP + G G +G Sbjct: 312 VPVKPAA--GGKSGLGLPTRPGEKAADGARGGGSG 344
>SN1L2_PONPY (Q5REX1) Serine/threonine-protein kinase SNF1-like kinase 2 (EC| 2.7.11.1) Length = 925 Score = 31.2 bits (69), Expect = 0.65 Identities = 19/67 (28%), Positives = 32/67 (47%) Frame = +2 Query: 101 PIWRTIVAATRLQEWKASLSQSNQQLHLEKKPGWACRRRLPMMTELAARQEPPAPTPSYL 280 P+ + ++ ++ LSQ Q++ L+ P + R P+ T+L +Q PP P P Sbjct: 773 PLSPVLEPSSEQMQYSPFLSQY-QEMQLQPLPSTSSPRAAPLPTQLQQQQPPPPPPP--- 828 Query: 281 SPNSRNP 301 P R P Sbjct: 829 -PPPRQP 834
>CHD9_MOUSE (Q8BYH8) Chromodomain-helicase-DNA-binding protein 9 (EC 3.6.1.-)| (ATP-dependent helicase CHD9) (CHD-9) (Peroxisomal proliferator-activated receptor A-interacting complex 320 kDa protein) (PPAR-alpha-interacting complex protein 320 kDa) Length = 2885 Score = 31.2 bits (69), Expect = 0.65 Identities = 12/32 (37%), Positives = 20/32 (62%) Frame = +3 Query: 81 ARQPSIHRSGGQSSRQQDYKSGKPPCPSQTSS 176 +++P +H+ G QSS D S + C S++SS Sbjct: 2117 SKKPRVHKRGSQSSSDSDSDSARSSCSSRSSS 2148
>Y1998_PARUW (Q6M9M7) Hypothetical RNA methyltransferase pc1998 (EC 2.1.1.-)| Length = 383 Score = 30.8 bits (68), Expect = 0.85 Identities = 16/43 (37%), Positives = 23/43 (53%) Frame = +2 Query: 92 VDPPIWRTIVAATRLQEWKASLSQSNQQLHLEKKPGWACRRRL 220 V+PPIWR ++ + +K +L N LH GW CR +L Sbjct: 27 VEPPIWREVI-----ENFKETL---NPILHQGTLTGWRCRAKL 61
>NUCL_XENLA (P20397) Nucleolin (Protein C23)| Length = 650 Score = 30.8 bits (68), Expect = 0.85 Identities = 22/82 (26%), Positives = 30/82 (36%) Frame = +1 Query: 85 DSRRSTDLADNRRGNKITRVESLPVPVKPAATPGKKTGLGLPAPVADDDRAGCTSGAAGA 264 DS D+ ++ ++ V P K ATP K T P A + G T G Sbjct: 26 DSEEEEDMEEDDSSDEEVEVPVKKTPAKKTATPAKAT----PGKAATPGKKGATPAKNGK 81 Query: 265 DAVVLEPELTEPDLHVRRGDEQ 330 A E E E D D++ Sbjct: 82 QAKKQESEEEEDDSDEEAEDQK 103
>ARNT_DROME (O15945) Aryl hydrocarbon receptor nuclear translocator homolog| (dARNT) (Protein tango) (Hypoxia-inducible factor 1 beta) Length = 644 Score = 30.4 bits (67), Expect = 1.1 Identities = 19/60 (31%), Positives = 27/60 (45%), Gaps = 8/60 (13%) Frame = +3 Query: 36 QQHALTRPSYDETLTARQPS----IHRSGGQSSRQQD----YKSGKPPCPSQTSSYTWKK 191 QQ Y +T AR PS S G +RQQ Y++G PP P+ + W++ Sbjct: 523 QQPVTEGYQYQQTSPARSPSGPTYTQLSAGNGNRQQAQPGAYQAGPPPPPNAPGMWDWQQ 582
>TRI11_HUMAN (Q96F44) Tripartite motif protein 11 (EC 6.3.2.-) (RING finger| protein 92) (BIA1 protein) Length = 468 Score = 30.4 bits (67), Expect = 1.1 Identities = 13/31 (41%), Positives = 17/31 (54%) Frame = +2 Query: 212 RRLPMMTELAARQEPPAPTPSYLSPNSRNPI 304 R L M E+A R PP+P P + P R P+ Sbjct: 69 RPLAKMAEMARRLHPPSPVPQGVCPAHREPL 99
>NR1H2_BOVIN (Q5BIS6) Oxysterols receptor LXR-beta| Length = 455 Score = 30.0 bits (66), Expect = 1.5 Identities = 17/54 (31%), Positives = 24/54 (44%) Frame = +1 Query: 160 PVKPAATPGKKTGLGLPAPVADDDRAGCTSGAAGADAVVLEPELTEPDLHVRRG 321 P P+++PG K P P D T GA A VV+ EP+ ++G Sbjct: 18 PSTPSSSPGGKEDGPEPCPGGADPDVPSTDGADSASVVVILDTAEEPERKRKKG 71
>NCOR2_MOUSE (Q9WU42) Nuclear receptor corepressor 2 (N-CoR2) (Silencing mediator| of retinoic acid and thyroid hormone receptor) (SMRT) (SMRTe) (Thyroid-, retinoic-acid-receptor-associated corepressor) (T3 receptor-associating factor) (TRAC) Length = 2472 Score = 29.6 bits (65), Expect = 1.9 Identities = 24/67 (35%), Positives = 32/67 (47%), Gaps = 6/67 (8%) Frame = -1 Query: 236 ARSSSATGAGRPSPVFFPGVAAGLTGT--GRLSTLV--ILLPRRLS--ARSVDRRLSRGE 75 ARS+S + RP+ F P L GT G TL+ +LLP+ S AR R+ G Sbjct: 1856 ARSTSTSSPVRPAATFPPATHCPLGGTLEGVYPTLMEPVLLPKETSRVARPERARVDAGH 1915 Query: 74 CFVVAGP 54 F+ P Sbjct: 1916 AFLTKPP 1922
>MAP1A_HUMAN (P78559) Microtubule-associated protein 1A (MAP 1A)| (Proliferation-related protein p80) [Contains: MAP1 light chain LC2] Length = 2805 Score = 29.6 bits (65), Expect = 1.9 Identities = 33/122 (27%), Positives = 47/122 (38%), Gaps = 15/122 (12%) Frame = +1 Query: 31 SVNSTP*H-GPATTKHSPRDSRRSTDLADNRRGNKITRVESLPVPVKPA----------A 177 S TP H P K P+D + + D +R + + ++ VKP Sbjct: 1004 SATHTPFHQSPVEEKSEPQDFQEADSWGDTKRTPGVGKEDAAEETVKPGPEEGTLEKEEK 1063 Query: 178 TPGKKTGLGLPAPV-ADDDRAGCTSGAAGAD--AVVLE-PELTEPDLHVRRGDEQLGGLR 345 P ++ APV D+ GCT A A+V E E EP + + GGLR Sbjct: 1064 VPPPRSPQAQEAPVNIDEGLTGCTIQLLPAQDKAIVFEIMEAGEPTGPILGAEALPGGLR 1123 Query: 346 RL 351 L Sbjct: 1124 TL 1125
>CHD9_HUMAN (Q3L8U1) Chromodomain-helicase-DNA-binding protein 9 (EC 3.6.1.-)| (ATP-dependent helicase CHD9) (CHD-9) (Chromatin-related mesenchymal modulator) (CReMM) (Chromatin remodeling factor CHROM1) (Peroxisomal proliferator-activated receptor A-inter Length = 2897 Score = 29.3 bits (64), Expect = 2.5 Identities = 11/32 (34%), Positives = 20/32 (62%) Frame = +3 Query: 81 ARQPSIHRSGGQSSRQQDYKSGKPPCPSQTSS 176 +++P +H+ G +SS D S + C S++SS Sbjct: 2118 SKKPRVHKRGSESSSDSDSDSERSSCSSRSSS 2149
>NINAC_DROME (P10676) Neither inactivation nor afterpotential protein C (EC| 2.7.11.1) Length = 1501 Score = 29.3 bits (64), Expect = 2.5 Identities = 13/45 (28%), Positives = 22/45 (48%) Frame = +3 Query: 60 SYDETLTARQPSIHRSGGQSSRQQDYKSGKPPCPSQTSSYTWKKN 194 SY+ + +HRSG + + + Y + PP P SS ++ N Sbjct: 1299 SYNSNYNNQNWGVHRSGSRRNSLKGYAAPPPPPPPMPSSNYYRNN 1343
>ASIP_BOVIN (Q29414) Agouti signaling protein precursor (ASP) (Agouti switch| protein) Length = 133 Score = 29.3 bits (64), Expect = 2.5 Identities = 29/104 (27%), Positives = 43/104 (41%), Gaps = 5/104 (4%) Frame = +2 Query: 5 LLCILLLVSRSTARP-----DTAQLRRNTHRATAVDPPIWRTIVAATRLQEWKASLSQSN 169 L+C+ L + S P D L+ N+ P + +IVA K S S Sbjct: 12 LVCLCFLTAYSHLAPEEKPRDERNLKNNSSMNLLDFPSV--SIVALN-----KKSKKISR 64 Query: 170 QQLHLEKKPGWACRRRLPMMTELAARQEPPAPTPSYLSPNSRNP 301 + +K+P +R+ PM AR PP PTP + +S P Sbjct: 65 NEAEKKKRPS---KRKAPMKN--VARTRPPPPTPCVATRDSCKP 103
>FREM2_MOUSE (Q6NVD0) FRAS1-related extracellular matrix protein 2 precursor (ECM3| homolog) (NV domain-containing protein 1) Length = 3160 Score = 28.9 bits (63), Expect = 3.2 Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 2/53 (3%) Frame = +3 Query: 39 QHALTRPSYDETL--TARQPSIHRSGGQSSRQQDYKSGKPPCPSQTSSYTWKK 191 Q AL R Y T+ + + HR G+ S + Y S P P Q ++ +WKK Sbjct: 2991 QVALGREWYIHTIYTVKSKDNTHRGIGKRSLEYQYHSVVHPGPPQATTKSWKK 3043
>COAT_IRV6 (Q05815) Major capsid protein (MCP) (Major structural protein)| (MSP) Length = 467 Score = 28.9 bits (63), Expect = 3.2 Identities = 14/35 (40%), Positives = 17/35 (48%) Frame = +1 Query: 112 DNRRGNKITRVESLPVPVKPAATPGKKTGLGLPAP 216 DN GN ++ PVPV PA + L LP P Sbjct: 150 DNMIGNVSALIQPQPVPVAPATVSLPEADLNLPLP 184
>FRE2_YEAST (P36033) Ferric reductase transmembrane component 2 precursor (EC| 1.16.1.7) (Ferric-chelate reductase 2) Length = 711 Score = 28.9 bits (63), Expect = 3.2 Identities = 14/28 (50%), Positives = 17/28 (60%) Frame = +1 Query: 196 GLGLPAPVADDDRAGCTSGAAGADAVVL 279 G GLP P+A + G TS AAG +V L Sbjct: 546 GTGLPGPIAHAIKLGKTSAAAGKQSVKL 573
>CXA12_RAT (Q80XF7) Gap junction alpha-12 protein (Connexin-47) (Cx47)| Length = 440 Score = 28.5 bits (62), Expect = 4.2 Identities = 22/57 (38%), Positives = 28/57 (49%), Gaps = 3/57 (5%) Frame = -1 Query: 245 VQPARSSSATGAG---RPSPVFFPGVAAGLTGTGRLSTLVILLPRRLSARSVDRRLS 84 V+ R +SA G G RP P FP AAGL S +V R AR+ D+ L+ Sbjct: 297 VRGRRGASAAGPGPAPRPPPCAFPAAAAGLACPPDYSLVVRAAER---ARAHDQNLA 350
>CXA12_MOUSE (Q8BQU6) Gap junction alpha-12 protein (Connexin-47) (Cx47)| Length = 440 Score = 28.5 bits (62), Expect = 4.2 Identities = 22/57 (38%), Positives = 28/57 (49%), Gaps = 3/57 (5%) Frame = -1 Query: 245 VQPARSSSATGAG---RPSPVFFPGVAAGLTGTGRLSTLVILLPRRLSARSVDRRLS 84 V+ R +SA G G RP P FP AAGL S +V R AR+ D+ L+ Sbjct: 297 VRGRRGASAAGPGPTPRPPPCAFPAAAAGLACPPDYSLVVRAAER---ARAHDQNLA 350
>RSD1_SCHPO (O13845) RNA-binding protein rsd1| Length = 604 Score = 28.5 bits (62), Expect = 4.2 Identities = 14/41 (34%), Positives = 20/41 (48%), Gaps = 3/41 (7%) Frame = +3 Query: 63 YDETLTAR---QPSIHRSGGQSSRQQDYKSGKPPCPSQTSS 176 +DETL + QPS G + QDY+ P P++ S Sbjct: 431 FDETLARQERSQPSQRNGGSSTYESQDYREAAPLSPTEEES 471
>GGABP_RAT (Q6AY97) GGA-binding partner| Length = 442 Score = 28.5 bits (62), Expect = 4.2 Identities = 18/64 (28%), Positives = 29/64 (45%) Frame = +1 Query: 112 DNRRGNKITRVESLPVPVKPAATPGKKTGLGLPAPVADDDRAGCTSGAAGADAVVLEPEL 291 D +G ++P PA + G + P + D DR+ +SG +DAV+ P+ Sbjct: 16 DGEQGGNQAVSPAVPWATFPAVS-GVRLSPASPELILDHDRSSPSSGHLRSDAVISSPDD 74 Query: 292 TEPD 303 T D Sbjct: 75 TRAD 78
>CO8A2_HUMAN (P25067) Collagen alpha-2(VIII) chain precursor (Endothelial| collagen) Length = 703 Score = 28.5 bits (62), Expect = 4.2 Identities = 19/49 (38%), Positives = 23/49 (46%), Gaps = 2/49 (4%) Frame = +1 Query: 160 PVKPAATPGKKTGLGLPAPVADDDRAG--CTSGAAGADAVVLEPELTEP 300 P+ P PG K GLP P + RAG T+G G V P +T P Sbjct: 473 PIGPQGLPGLKGEPGLPGP-PGEGRAGEPGTAGPTGPPGVPGSPGITGP 520
>Y1329_MYCLE (P54076) Hypothetical protein ML1329| Length = 331 Score = 28.5 bits (62), Expect = 4.2 Identities = 15/44 (34%), Positives = 21/44 (47%) Frame = +1 Query: 184 GKKTGLGLPAPVADDDRAGCTSGAAGADAVVLEPELTEPDLHVR 315 G + G + + DR GADAVVLEP+ D+ +R Sbjct: 278 GGRDGQVIELDIGSIDRLARDIAGHGADAVVLEPDALRDDVLIR 321
>NUCL_MESAU (P08199) Nucleolin (Protein C23)| Length = 713 Score = 28.5 bits (62), Expect = 4.2 Identities = 16/43 (37%), Positives = 19/43 (44%) Frame = +1 Query: 136 TRVESLPVPVKPAATPGKKTGLGLPAPVADDDRAGCTSGAAGA 264 T + P K ATPGKK A VA + G + A GA Sbjct: 90 TPAKKAVTPAKAVATPGKKGATQAKALVATPGKKGAVTPAKGA 132
>Y4VJ_RHISN (Q53218) Hypothetical 39.2 kDa protein y4vJ| Length = 351 Score = 28.5 bits (62), Expect = 4.2 Identities = 14/27 (51%), Positives = 16/27 (59%) Frame = -1 Query: 203 PSPVFFPGVAAGLTGTGRLSTLVILLP 123 PSP+ AGLT T RL T V +LP Sbjct: 54 PSPLLMVAHCAGLTSTIRLGTAVCVLP 80
>NRP1A_BRARE (Q8QFX6) Neuropilin-1a precursor (znrp1)| Length = 923 Score = 28.5 bits (62), Expect = 4.2 Identities = 14/34 (41%), Positives = 17/34 (50%) Frame = +1 Query: 151 LPVPVKPAATPGKKTGLGLPAPVADDDRAGCTSG 252 + VP P TP T P+ DDD+A C SG Sbjct: 583 MEVPTVPPTTPAAST---TPSDECDDDQANCHSG 613
>ZN185_HUMAN (O15231) Zinc finger protein 185 (LIM-domain protein ZNF185) (P1-A)| Length = 457 Score = 28.1 bits (61), Expect = 5.5 Identities = 24/73 (32%), Positives = 33/73 (45%) Frame = +1 Query: 55 GPATTKHSPRDSRRSTDLADNRRGNKITRVESLPVPVKPAATPGKKTGLGLPAPVADDDR 234 GP+ P RST +++ RG +I R++ L TP + GL L AP D Sbjct: 92 GPSEKSQDPPALARSTPGSNSSRGEEIVRLQIL--------TP--RAGLRLVAP----DV 137 Query: 235 AGCTSGAAGADAV 273 G +S A AV Sbjct: 138 EGMSSSATSVSAV 150
>PPZ2_YEAST (P33329) Serine/threonine-protein phosphatase PP-Z2 (EC 3.1.3.16)| Length = 709 Score = 28.1 bits (61), Expect = 5.5 Identities = 21/70 (30%), Positives = 32/70 (45%) Frame = +1 Query: 40 STP*HGPATTKHSPRDSRRSTDLADNRRGNKITRVESLPVPVKPAATPGKKTGLGLPAPV 219 STP H PA K S RD+ S D + R + I + ++ P A++ K+ L + Sbjct: 269 STPLHSPALRKMSSRDNDDSGDNVNGRGTSPIPNL-NIDKPSPSASSASKREYLSAYPTL 327 Query: 220 ADDDRAGCTS 249 A D + S Sbjct: 328 AHRDSSSSLS 337
>PTG3B_CORGL (Q45298) PTS system glucose-specific EIIBCA component (EIIBCA-Glc)| (EII-Glc/EIII-Glc) [Includes: Glucose-specific phosphotransferase enzyme IIB component (EC 2.7.1.69) (PTS system glucose-specific EIIB component); Glucose permease IIC compone Length = 674 Score = 28.1 bits (61), Expect = 5.5 Identities = 18/45 (40%), Positives = 19/45 (42%) Frame = +1 Query: 172 AATPGKKTGLGLPAPVADDDRAGCTSGAAGADAVVLEPELTEPDL 306 AA T APVA A GAAGA AV +P L L Sbjct: 479 AAEQTNNTPAAPAAPVAPAAGAAAAGGAAGATAVATKPRLAAGQL 523
>ECHP_MOUSE (Q9DBM2) Peroxisomal bifunctional enzyme (PBE) (PBFE) [Includes:| Enoyl-CoA hydratase (EC 4.2.1.17); 3,2-trans-enoyl-CoA isomerase (EC 5.3.3.8); 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35)] Length = 717 Score = 28.1 bits (61), Expect = 5.5 Identities = 16/44 (36%), Positives = 23/44 (52%) Frame = +1 Query: 94 RSTDLADNRRGNKITRVESLPVPVKPAATPGKKTGLGLPAPVAD 225 R +DLA G K+ + + L P P TP +K G +P+AD Sbjct: 514 RVSDLAGLDVGWKVRKGQGLTGPSLPPGTPTRKRGNTRYSPIAD 557
>XYLM_PSEPU (P21395) Xylene monooxygenase subunit 1 (EC 1.14.15.-)| Length = 369 Score = 28.1 bits (61), Expect = 5.5 Identities = 11/38 (28%), Positives = 20/38 (52%), Gaps = 3/38 (7%) Frame = +2 Query: 98 PPIWRTIVAATRLQEWK---ASLSQSNQQLHLEKKPGW 202 PP+W ++A +L++W A+ + + KK GW Sbjct: 318 PPLWFALIAKPKLRDWDQRYATPGERELAMAANKKAGW 355
>PCGF6_HUMAN (Q9BYE7) Polycomb group RING finger protein 6 (RING finger protein| 134) (Mel18 and Bmi1-like RING finger) Length = 352 Score = 28.1 bits (61), Expect = 5.5 Identities = 18/46 (39%), Positives = 23/46 (50%), Gaps = 1/46 (2%) Frame = +1 Query: 154 PVPVKPAA-TPGKKTGLGLPAPVADDDRAGCTSGAAGADAVVLEPE 288 P PV P A TP G PAP+++ GC +G+ LEPE Sbjct: 28 PPPVSPPALTPAPAAGEEGPAPLSETGAPGC----SGSRPPELEPE 69
>DCUP_XYLFT (Q87DV0) Uroporphyrinogen decarboxylase (EC 4.1.1.37) (URO-D) (UPD)| Length = 354 Score = 28.1 bits (61), Expect = 5.5 Identities = 19/62 (30%), Positives = 26/62 (41%), Gaps = 6/62 (9%) Frame = +2 Query: 59 QLRRNTHRATAVDPPIWRTIVAATRLQEWKASLSQSNQQLHLEKKPGWACR------RRL 220 +L R R T PIW A L E++A+ + L + K P AC RR Sbjct: 6 RLLRALRRDTVDRTPIWLMRQAGRYLPEYRAARQHAGSFLKMAKTPELACEITLQPLRRF 65 Query: 221 PM 226 P+ Sbjct: 66 PL 67
>ACE1_TRIRE (Q9P8W3) Zinc finger transcription factor ace1 (ACEI)| Length = 733 Score = 27.7 bits (60), Expect = 7.2 Identities = 19/58 (32%), Positives = 25/58 (43%), Gaps = 13/58 (22%) Frame = +2 Query: 152 SLSQSNQQLHLEKKPGWACRR------RLPMMTELAARQEP-------PAPTPSYLSP 286 S +SN + H+EK GW R + P A+Q P P+ TPSY P Sbjct: 474 SKRESNCKQHMEKAHGWTYVRTKTNGKKAPSQNGSTAQQTPPLANVSTPSSTPSYSVP 531
>STK10_HUMAN (O94804) Serine/threonine-protein kinase 10 (EC 2.7.11.1)| (Lymphocyte-oriented kinase) Length = 968 Score = 27.7 bits (60), Expect = 7.2 Identities = 17/68 (25%), Positives = 27/68 (39%), Gaps = 7/68 (10%) Frame = +1 Query: 37 NSTP*HGPATTKHSPRDSRRSTDLADNRRGNKITRV-------ESLPVPVKPAATPGKKT 195 NS+ P+ P + ST LA ++ + + SL P PG + Sbjct: 343 NSSEVSPPSLNADKPLEESPSTPLAPSQSQDSVNEPCSQPSGDRSLQTTSPPVVAPGNEN 402 Query: 196 GLGLPAPV 219 GL +P P+ Sbjct: 403 GLAVPVPL 410
>PCLO_MOUSE (Q9QYX7) Protein piccolo (Aczonin) (Multidomain presynaptic| cytomatrix protein) (Brain-derived HLMN protein) Length = 5038 Score = 27.7 bits (60), Expect = 7.2 Identities = 13/38 (34%), Positives = 18/38 (47%) Frame = +3 Query: 81 ARQPSIHRSGGQSSRQQDYKSGKPPCPSQTSSYTWKKN 194 A PS+HR S Q + GKPP P + + K+ Sbjct: 73 AESPSMHRKQELDSSQAPQQPGKPPDPGRPPQHGLSKS 110
>ELN_BOVIN (P04985) Elastin precursor (Tropoelastin)| Length = 747 Score = 27.7 bits (60), Expect = 7.2 Identities = 14/32 (43%), Positives = 14/32 (43%) Frame = -1 Query: 242 QPARSSSATGAGRPSPVFFPGVAAGLTGTGRL 147 QP A G P VFFPG G G G L Sbjct: 25 QPGGVPGAVPGGVPGGVFFPGAGLGGLGVGGL 56
>DCX_HUMAN (O43602) Neuronal migration protein doublecortin (Lissencephalin-X)| (Lis-X) (Doublin) Length = 402 Score = 27.7 bits (60), Expect = 7.2 Identities = 20/65 (30%), Positives = 30/65 (46%), Gaps = 6/65 (9%) Frame = +1 Query: 64 TTKHSPRDSRRSTDLADNRRG---NKITRVESLPVPVKPAATPG---KKTGLGLPAPVAD 225 T+ SP RRS AD+ G ++++ +S P+ +PG K L LP + D Sbjct: 335 TSAKSPGPMRRSKSPADSANGTSSSQLSTPKSKQSPISTPTSPGSLRKHKDLYLPLSLDD 394 Query: 226 DDRAG 240 D G Sbjct: 395 SDSLG 399
>TS57_MYCTU (Q10621) Transposase for insertion sequence element IS1557| Length = 444 Score = 27.7 bits (60), Expect = 7.2 Identities = 16/51 (31%), Positives = 27/51 (52%) Frame = +2 Query: 95 DPPIWRTIVAATRLQEWKASLSQSNQQLHLEKKPGWACRRRLPMMTELAAR 247 DP ++R + L+ + + +Q L++ WA R R+P+ ELAAR Sbjct: 325 DPRLYRAYLLKESLRHVFSVKGEEGKQA-LDRWISWAQRCRIPVFVELAAR 374
>CRSP2_HUMAN (O60244) CRSP complex subunit 2 (Cofactor required for Sp1| transcriptional activation subunit 2) (Transcriptional coactivator CRSP150) (Vitamin D3 receptor-interacting protein complex 150 kDa component) (DRIP150) (Thyroid hormone receptor-ass Length = 1454 Score = 27.7 bits (60), Expect = 7.2 Identities = 18/65 (27%), Positives = 30/65 (46%) Frame = -1 Query: 203 PSPVFFPGVAAGLTGTGRLSTLVILLPRRLSARSVDRRLSRGECFVVAGPCQGVLLTERQ 24 PSP PG+ GL G+ S L L + R + R + + ++ GV++ + Sbjct: 1188 PSPT--PGLVPGLAGSYLCSPLERFLGSVIMRRHLQRIIQQETLQLINSNEPGVIMFKTD 1245 Query: 23 VIKCR 9 +KCR Sbjct: 1246 ALKCR 1250
>CWC22_NEUCR (Q7RX84) Pre-mRNA-splicing factor cwc-22| Length = 1010 Score = 27.3 bits (59), Expect = 9.4 Identities = 16/45 (35%), Positives = 21/45 (46%) Frame = +1 Query: 118 RRGNKITRVESLPVPVKPAATPGKKTGLGLPAPVADDDRAGCTSG 252 RRG TR S P+ P + APV+++DRA SG Sbjct: 834 RRGRSGTRSRSRSYSRSPSPPPARGYPTRGRAPVSNNDRAAAASG 878
>TRI11_MOUSE (Q99PQ2) Tripartite motif protein 11 (EC 6.3.2.-)| Length = 467 Score = 27.3 bits (59), Expect = 9.4 Identities = 12/31 (38%), Positives = 16/31 (51%) Frame = +2 Query: 212 RRLPMMTELAARQEPPAPTPSYLSPNSRNPI 304 R L M E+A R PP+P P + R P+ Sbjct: 69 RPLAKMAEMARRLHPPSPVPQGVCAAHREPL 99
>KI67_HUMAN (P46013) Antigen KI-67| Length = 3256 Score = 27.3 bits (59), Expect = 9.4 Identities = 24/84 (28%), Positives = 32/84 (38%), Gaps = 5/84 (5%) Frame = +1 Query: 19 ITCLSVNSTP*HGPATTKHSPRDSRRSTD-----LADNRRGNKITRVESLPVPVKPAATP 183 I C S P PA+TK P+ + R D LA +R + P KPA + Sbjct: 2340 IACKSPQPDPVDTPASTKQRPKRNLRKADVEEEFLALRKRTPSAGKAMDTP---KPAVSD 2396 Query: 184 GKKTGLGLPAPVADDDRAGCTSGA 255 K + PV D G G+ Sbjct: 2397 EKNINTFVETPVQKLDLLGNLPGS 2420
>COBA2_HUMAN (P13942) Collagen alpha-2(XI) chain precursor| Length = 1736 Score = 27.3 bits (59), Expect = 9.4 Identities = 18/44 (40%), Positives = 18/44 (40%) Frame = +1 Query: 160 PVKPAATPGKKTGLGLPAPVADDDRAGCTSGAAGADAVVLEPEL 291 P PA PG GLP V R G T G AG V P L Sbjct: 1355 PAGPAGKPGPDGLRGLPGSVGQQGRPGAT-GQAGPPGPVGPPGL 1397
>SHH_CYNPY (Q90385) Sonic hedgehog protein precursor (SHH) [Contains: Sonic| hedgehog protein N-product; Sonic hedgehog protein C-product] Length = 432 Score = 27.3 bits (59), Expect = 9.4 Identities = 10/19 (52%), Positives = 11/19 (57%) Frame = +3 Query: 129 QDYKSGKPPCPSQTSSYTW 185 QDY S PP PSQ+ W Sbjct: 386 QDYSSHSPPAPSQSEGVHW 404
>NRP1_MOUSE (P97333) Neuropilin-1 precursor (A5 protein)| Length = 923 Score = 27.3 bits (59), Expect = 9.4 Identities = 17/38 (44%), Positives = 20/38 (52%) Frame = +1 Query: 139 RVESLPVPVKPAATPGKKTGLGLPAPVADDDRAGCTSG 252 R+E L V+ A T G T G P DDD+A C SG Sbjct: 577 RMELLGCEVE-APTAGPTTPNGNPVHECDDDQANCHSG 613
>EX9_ECOLI (P38506) Exodeoxyribonuclease-9 (EC 3.1.11.-) (Exodeoxyribonuclease| IX) (Exonuclease IX) (Exo IX) Length = 281 Score = 27.3 bits (59), Expect = 9.4 Identities = 10/21 (47%), Positives = 14/21 (66%) Frame = +3 Query: 105 SGGQSSRQQDYKSGKPPCPSQ 167 SG + R DYK+G+PP P + Sbjct: 86 SGWRHQRLPDYKAGRPPMPEE 106 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 46,176,697 Number of Sequences: 219361 Number of extensions: 931415 Number of successful extensions: 4404 Number of sequences better than 10.0: 51 Number of HSP's better than 10.0 without gapping: 4064 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4397 length of database: 80,573,946 effective HSP length: 94 effective length of database: 59,954,012 effective search space used: 1438896288 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
