ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart15h01
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AC113333.2| Oryza sativa (japonica cultivar-group) chromosome... 117 3e-23
2dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 117 3e-23
3ref|NM_185699.1| Oryza sativa (japonica cultivar-group), Ozsa805... 44 0.30
4ref|NM_185689.1| Oryza sativa (japonica cultivar-group), Ozsa804... 44 0.30
5dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.30
6dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, co... 44 0.30
7dbj|AP003019.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.30
8dbj|AP002069.2| Oryza sativa (japonica cultivar-group) genomic D... 44 0.30
9gb|AC130836.4| Mus musculus BAC clone RP24-147P10 from chromosom... 42 1.2
10gb|AC157099.5| Mus musculus 6 BAC RP24-467O4 (Roswell Park Cance... 42 1.2
11gb|AC159712.7| Mus musculus BAC RP23-236J3 (Roswell Park Cancer... 42 1.2
12gb|AC142166.6| Mus musculus BAC clone RP24-455G9 from chromosome... 42 1.2
13gb|CP000112.1| Desulfovibrio desulfuricans G20, complete genome 40 4.7
14ref|XM_550107.1| Oryza sativa (japonica cultivar-group), mRNA 40 4.7
15gb|CP000125.1| Burkholderia pseudomallei 1710b chromosome II, co... 40 4.7
16emb|AJ965256.1| Dehalococcoides sp. CBDB1 complete genome 40 4.7
17gb|AC129304.6| Mus musculus BAC clone RP24-462H23 from chromosom... 40 4.7
18gb|AC122018.4| Mus musculus BAC clone RP24-361O20 from chromosom... 40 4.7
19gb|AC125234.4| Mus musculus BAC clone RP23-14K16 from 13, comple... 40 4.7
20emb|BX571966.1| Burkholderia pseudomallei strain K96243, chromos... 40 4.7
21gb|AF186190.4| Homo sapiens chromosome 8 clone CTC-369M3 map 8q2... 40 4.7
22gb|AF192304.6| Homo sapiens chromosome 8 clone CTC-458A3 map 8q2... 40 4.7
23gb|CP000249.1| Frankia sp. CcI3, complete genome 40 4.7
24gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome 40 4.7
25gb|AY987040.1| Oryza sativa (japonica cultivar-group) EUI gene, ... 40 4.7
26gb|CP000011.2| Burkholderia mallei ATCC 23344 chromosome 2, comp... 40 4.7
27dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 40 4.7
28dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 40 4.7
29gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome 40 4.7
30gb|AF055579.2|AF055579 Streptomyces antibioticus putative 3-keto... 40 4.7
31dbj|AP005092.3| Oryza sativa (japonica cultivar-group) genomic D... 40 4.7
32dbj|AP005314.2| Oryza sativa (japonica cultivar-group) genomic D... 40 4.7
33dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome 40 4.7
34dbj|AP003311.2| Oryza sativa (japonica cultivar-group) genomic D... 40 4.7
35dbj|AP005619.3| Oryza sativa (japonica cultivar-group) genomic D... 40 4.7
36gb|AF237894.1|AF237894S1 Streptomyces antibioticus Tu99 oleandom... 40 4.7
37dbj|AK073741.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 4.7
38gb|AC137692.4| Mus musculus BAC clone RP24-323P9 from 13, comple... 40 4.7
39gb|AC137619.3| Oryza sativa (japonica cultivar-group) chromosome... 40 4.7 
>gb|AC113333.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1115_B06,
             complete sequence
          Length = 139139

 Score =  117 bits (59), Expect = 3e-23
 Identities = 77/83 (92%)
 Strand = Plus / Plus

                                                                         
Query: 274   gtacttgagcccgaactcacggaacccgatctccatgtccgccgcggcgacgagcagctc 333
             |||||||||||||||||| ||||| |||||||||||||| || |||||||||||||||||
Sbjct: 27994 gtacttgagcccgaactcccggaagccgatctccatgtcggcggcggcgacgagcagctc 28053

                                    
Query: 334   ggaggcctgcgccggctcgagga 356
             ||  |||||||||||||||||||
Sbjct: 28054 ggccgcctgcgccggctcgagga 28076
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score =  117 bits (59), Expect = 3e-23
 Identities = 77/83 (92%)
 Strand = Plus / Plus

                                                                            
Query: 274      gtacttgagcccgaactcacggaacccgatctccatgtccgccgcggcgacgagcagctc 333
                |||||||||||||||||| ||||| |||||||||||||| || |||||||||||||||||
Sbjct: 27663436 gtacttgagcccgaactcccggaagccgatctccatgtcggcggcggcgacgagcagctc 27663495

                                       
Query: 334      ggaggcctgcgccggctcgagga 356
                ||  |||||||||||||||||||
Sbjct: 27663496 ggccgcctgcgccggctcgagga 27663518



 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 312      ccgccgcggcgacgagcagc 331
                ||||||||||||||||||||
Sbjct: 23594041 ccgccgcggcgacgagcagc 23594022
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>ref|NM_185699.1| Oryza sativa (japonica cultivar-group), Ozsa8050 predicted mRNA
          Length = 1137

 Score = 44.1 bits (22), Expect = 0.30
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 253 gccgccggcgccgacgccgtcg 274
           ||||||||||||||||||||||
Sbjct: 408 gccgccggcgccgacgccgtcg 387
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>ref|NM_185689.1| Oryza sativa (japonica cultivar-group), Ozsa8040 predicted mRNA
          Length = 1137

 Score = 44.1 bits (22), Expect = 0.30
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 253 gccgccggcgccgacgccgtcg 274
           ||||||||||||||||||||||
Sbjct: 408 gccgccggcgccgacgccgtcg 387
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
               sequence
          Length = 30731886

 Score = 44.1 bits (22), Expect = 0.30
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                     
Query: 253     gccgccggcgccgacgccgtcg 274
               ||||||||||||||||||||||
Sbjct: 3895414 gccgccggcgccgacgccgtcg 3895393



 Score = 44.1 bits (22), Expect = 0.30
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                     
Query: 253     gccgccggcgccgacgccgtcg 274
               ||||||||||||||||||||||
Sbjct: 3883591 gccgccggcgccgacgccgtcg 3883570



 Score = 44.1 bits (22), Expect = 0.30
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                     
Query: 253     gccgccggcgccgacgccgtcg 274
               ||||||||||||||||||||||
Sbjct: 3845535 gccgccggcgccgacgccgtcg 3845514



 Score = 40.1 bits (20), Expect = 4.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 251     gagccgccggcgccgacgccgtcg 274
               ||||||||| ||||||||||||||
Sbjct: 8188071 gagccgccgccgccgacgccgtcg 8188048
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>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome
          Length = 9025608

 Score = 44.1 bits (22), Expect = 0.30
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                         
Query: 253     gccgccggcgccgacgccgtcgtact 278
               |||||||||||||| |||||||||||
Sbjct: 8056297 gccgccggcgccgaggccgtcgtact 8056322



 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 258     cggcgccgacgccgtcgtac 277
               ||||||||||||||||||||
Sbjct: 7692939 cggcgccgacgccgtcgtac 7692920
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>dbj|AP003019.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
            clone:OSJNBa0035I03
          Length = 153749

 Score = 44.1 bits (22), Expect = 0.30
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 253  gccgccggcgccgacgccgtcg 274
            ||||||||||||||||||||||
Sbjct: 1290 gccgccggcgccgacgccgtcg 1269
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>dbj|AP002069.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
              clone:P0015E04
          Length = 152046

 Score = 44.1 bits (22), Expect = 0.30
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 253    gccgccggcgccgacgccgtcg 274
              ||||||||||||||||||||||
Sbjct: 141545 gccgccggcgccgacgccgtcg 141524



 Score = 44.1 bits (22), Expect = 0.30
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 253    gccgccggcgccgacgccgtcg 274
              ||||||||||||||||||||||
Sbjct: 103489 gccgccggcgccgacgccgtcg 103468
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>gb|AC130836.4| Mus musculus BAC clone RP24-147P10 from chromosome Y, complete sequence
          Length = 199089

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 9     tctgcattttattacttgtct 29
             |||||||||||||||||||||
Sbjct: 51430 tctgcattttattacttgtct 51410
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>gb|AC157099.5| Mus musculus 6 BAC RP24-467O4 (Roswell Park Cancer Institute (C57BL/6J
             Male) Mouse BAC Library) complete sequence
          Length = 173237

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 153   ccctgtcccagtcaaaccagc 173
             |||||||||||||||||||||
Sbjct: 71854 ccctgtcccagtcaaaccagc 71874
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>gb|AC159712.7| Mus musculus  BAC RP23-236J3 (Roswell Park Cancer Institute (C57BL/6J
            Female) Mouse BAC Library) complete sequence
          Length = 221910

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 153  ccctgtcccagtcaaaccagc 173
            |||||||||||||||||||||
Sbjct: 1543 ccctgtcccagtcaaaccagc 1523
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>gb|AC142166.6| Mus musculus BAC clone RP24-455G9 from chromosome y, complete sequence
          Length = 169731

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 9     tctgcattttattacttgtct 29
             |||||||||||||||||||||
Sbjct: 20405 tctgcattttattacttgtct 20425
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>gb|CP000112.1| Desulfovibrio desulfuricans G20, complete genome
          Length = 3730232

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 253   gccgccggcgccgacgccgt 272
             ||||||||||||||||||||
Sbjct: 48000 gccgccggcgccgacgccgt 48019
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>ref|XM_550107.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 891

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 255 cgccggcgccgacgccgtcg 274
           ||||||||||||||||||||
Sbjct: 661 cgccggcgccgacgccgtcg 642
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>gb|CP000125.1| Burkholderia pseudomallei 1710b chromosome II, complete sequence
          Length = 3181762

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 312     ccgccgcggcgacgagcagc 331
               ||||||||||||||||||||
Sbjct: 2857433 ccgccgcggcgacgagcagc 2857414
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>emb|AJ965256.1| Dehalococcoides sp. CBDB1 complete genome
          Length = 1395502

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 150    cctccctgtcccagtcaaac 169
              ||||||||||||||||||||
Sbjct: 185942 cctccctgtcccagtcaaac 185961
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>gb|AC129304.6| Mus musculus BAC clone RP24-462H23 from chromosome 10, complete sequence
          Length = 153772

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 151    ctccctgtcccagtcaaacc 170
              ||||||||||||||||||||
Sbjct: 117909 ctccctgtcccagtcaaacc 117928
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>gb|AC122018.4| Mus musculus BAC clone RP24-361O20 from chromosome 10, complete
             sequence
          Length = 173543

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 151   ctccctgtcccagtcaaacc 170
             ||||||||||||||||||||
Sbjct: 51665 ctccctgtcccagtcaaacc 51684
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>gb|AC125234.4| Mus musculus BAC clone RP23-14K16 from 13, complete sequence
          Length = 209715

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 1      gtctctgctctgcattttat 20
              ||||||||||||||||||||
Sbjct: 183898 gtctctgctctgcattttat 183879
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>emb|BX571966.1| Burkholderia pseudomallei strain K96243, chromosome 2, complete sequence
          Length = 3173005

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 312     ccgccgcggcgacgagcagc 331
               ||||||||||||||||||||
Sbjct: 1035994 ccgccgcggcgacgagcagc 1035975
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>gb|AF186190.4| Homo sapiens chromosome 8 clone CTC-369M3 map 8q24.3 , complete
             sequence
          Length = 152405

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 236   ctggctgcacgtcaggagcc 255
             ||||||||||||||||||||
Sbjct: 46980 ctggctgcacgtcaggagcc 46961
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>gb|AF192304.6| Homo sapiens chromosome 8 clone CTC-458A3 map 8q24.3, complete sequence
          Length = 177028

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 236    ctggctgcacgtcaggagcc 255
              ||||||||||||||||||||
Sbjct: 136443 ctggctgcacgtcaggagcc 136424
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>gb|CP000249.1| Frankia sp. CcI3, complete genome
          Length = 5433628

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 253     gccgccggcgccgacgccgt 272
               ||||||||||||||||||||
Sbjct: 1904881 gccgccggcgccgacgccgt 1904862



 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 252     agccgccggcgccgacgccg 271
               ||||||||||||||||||||
Sbjct: 1464125 agccgccggcgccgacgccg 1464106
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>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome
          Length = 5331656

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 255     cgccggcgccgacgccgtcg 274
               ||||||||||||||||||||
Sbjct: 4483748 cgccggcgccgacgccgtcg 4483767
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>gb|AY987040.1| Oryza sativa (japonica cultivar-group) EUI gene, complete cds
          Length = 13120

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 312   ccgccgcggcgacgagcagc 331
             ||||||||||||||||||||
Sbjct: 13111 ccgccgcggcgacgagcagc 13092
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>gb|CP000011.2| Burkholderia mallei ATCC 23344 chromosome 2, complete sequence
          Length = 2325379

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 312    ccgccgcggcgacgagcagc 331
              ||||||||||||||||||||
Sbjct: 629742 ccgccgcggcgacgagcagc 629723
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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 312      ccgccgcggcgacgagcagc 331
                ||||||||||||||||||||
Sbjct: 20641210 ccgccgcggcgacgagcagc 20641191
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
               sequence
          Length = 43261740

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 255     cgccggcgccgacgccgtcg 274
               ||||||||||||||||||||
Sbjct: 2400175 cgccggcgccgacgccgtcg 2400194
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>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome
          Length = 5013479

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 198     gctgggcctgccggcgccgg 217
               ||||||||||||||||||||
Sbjct: 4422934 gctgggcctgccggcgccgg 4422915
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>gb|AF055579.2|AF055579 Streptomyces antibioticus putative 3-ketoreductase (oleW),
            2,3-dehydratase (oleV), dTDP-4-keto-6-deoxyglucose
            3,5-epimerase (oleL), dTDP-D-glucose synthase (oleS),
            dehydratase (oleE), 4-ketoreductase (oleU), dehydratase
            (oleNI), reductase (oleT), glycosyltransferase OleI
            (oleI), aminotransferase (oleN2), and glycosidase OleR
            (oleR) genes, complete cds
          Length = 15052

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 256  gccggcgccgacgccgtcgt 275
            ||||||||||||||||||||
Sbjct: 7632 gccggcgccgacgccgtcgt 7613
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>dbj|AP005092.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
             clone:OJ1112_E07
          Length = 132055

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 312   ccgccgcggcgacgagcagc 331
             ||||||||||||||||||||
Sbjct: 34821 ccgccgcggcgacgagcagc 34802
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>dbj|AP005314.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
              clone:P0515E01
          Length = 140063

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 312    ccgccgcggcgacgagcagc 331
              ||||||||||||||||||||
Sbjct: 106868 ccgccgcggcgacgagcagc 106849
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>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome
          Length = 6021225

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 312     ccgccgcggcgacgagcagc 331
               ||||||||||||||||||||
Sbjct: 2903789 ccgccgcggcgacgagcagc 2903808
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>dbj|AP003311.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0024G09
          Length = 175565

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 255    cgccggcgccgacgccgtcg 274
              ||||||||||||||||||||
Sbjct: 129225 cgccggcgccgacgccgtcg 129244
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>dbj|AP005619.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0624H09
          Length = 158719

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 251   gagccgccggcgccgacgccgtcg 274
             ||||||||| ||||||||||||||
Sbjct: 80434 gagccgccgccgccgacgccgtcg 80411
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>gb|AF237894.1|AF237894S1 Streptomyces antibioticus Tu99 oleandomycin biosynthetic gene
            cluster, partial sequence
          Length = 9523

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 256  gccggcgccgacgccgtcgt 275
            ||||||||||||||||||||
Sbjct: 7200 gccggcgccgacgccgtcgt 7181
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>dbj|AK073741.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033067A21, full
           insert sequence
          Length = 1444

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 312 ccgccgcggcgacgagcagc 331
           ||||||||||||||||||||
Sbjct: 111 ccgccgcggcgacgagcagc 92
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>gb|AC137692.4| Mus musculus BAC clone RP24-323P9 from 13, complete sequence
          Length = 180677

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 1      gtctctgctctgcattttat 20
              ||||||||||||||||||||
Sbjct: 102801 gtctctgctctgcattttat 102820
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>gb|AC137619.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0095J22,
              complete sequence
          Length = 151730

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 312    ccgccgcggcgacgagcagc 331
              ||||||||||||||||||||
Sbjct: 131213 ccgccgcggcgacgagcagc 131194


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,317,276
Number of Sequences: 3902068
Number of extensions: 2317276
Number of successful extensions: 54666
Number of sequences better than 10.0: 39
Number of HSP's better than 10.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 52877
Number of HSP's gapped (non-prelim): 1789
length of query: 356
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 334
effective length of database: 17,147,199,772
effective search space: 5727164723848
effective search space used: 5727164723848
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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