Clone Name | rbart15g08 |
---|---|
Clone Library Name | barley_pub |
>gb|AC154377.4| Mus musculus BAC clone RP23-63F23 from chromosome 14, complete sequence Length = 193561 Score = 38.2 bits (19), Expect = 2.2 Identities = 19/19 (100%) Strand = Plus / Plus Query: 5 ataactgggttcattgacc 23 ||||||||||||||||||| Sbjct: 41993 ataactgggttcattgacc 42011
>gb|AC116505.13| Mus musculus chromosome 5, clone RP24-302O2, complete sequence Length = 178695 Score = 36.2 bits (18), Expect = 8.6 Identities = 18/18 (100%) Strand = Plus / Plus Query: 1 gaaaataactgggttcat 18 |||||||||||||||||| Sbjct: 112874 gaaaataactgggttcat 112891
>gb|AY484589.1| Musa acuminata clone MuH9, genomic sequence Length = 82723 Score = 36.2 bits (18), Expect = 8.6 Identities = 18/18 (100%) Strand = Plus / Plus Query: 29 aagggattacagccaact 46 |||||||||||||||||| Sbjct: 59453 aagggattacagccaact 59470
>emb|Z70312.1|CEZC168 Caenorhabditis elegans Cosmid ZC168, complete sequence Length = 26307 Score = 36.2 bits (18), Expect = 8.6 Identities = 18/18 (100%) Strand = Plus / Minus Query: 2 aaaataactgggttcatt 19 |||||||||||||||||| Sbjct: 25212 aaaataactgggttcatt 25195
>emb|AL451049.11| Human DNA sequence from clone RP11-63A2 on chromosome 10 Contains a novel gene and a CpG island, complete sequence Length = 166973 Score = 36.2 bits (18), Expect = 8.6 Identities = 18/18 (100%) Strand = Plus / Minus Query: 2 aaaataactgggttcatt 19 |||||||||||||||||| Sbjct: 139104 aaaataactgggttcatt 139087
>emb|AL353621.19| Human DNA sequence from clone RP11-490D19 on chromosome 9 Contains a novel pseudogene, the MRPL50 gene for mitochondrial ribosomal protein L50, the ZNF189 gene for zinc finger protein 189, the ALDOB gene for aldolase B, fructose-bisphosphate, a NADH dehydrogenase (ubiquinone) 1 alpha subcomplex (NDUFA4) pseudogene, three novel genes, the 5' end of the RNF20 gene for ring finger protein 20 and three CpG islands, complete sequence Length = 164115 Score = 36.2 bits (18), Expect = 8.6 Identities = 18/18 (100%) Strand = Plus / Minus Query: 32 ggattacagccaactgaa 49 |||||||||||||||||| Sbjct: 125391 ggattacagccaactgaa 125374
>gb|AC163292.2| Mus musculus BAC clone RP23-241P22 from chromosome 13, complete sequence Length = 208105 Score = 36.2 bits (18), Expect = 8.6 Identities = 18/18 (100%) Strand = Plus / Minus Query: 4 aataactgggttcattga 21 |||||||||||||||||| Sbjct: 104861 aataactgggttcattga 104844
>gb|AC022398.7| Homo sapiens chromosome 10 clone RP11-491H19, complete sequence Length = 169184 Score = 36.2 bits (18), Expect = 8.6 Identities = 18/18 (100%) Strand = Plus / Plus Query: 2 aaaataactgggttcatt 19 |||||||||||||||||| Sbjct: 129031 aaaataactgggttcatt 129048
>gb|AC160980.5| Mus musculus BAC clone RP23-386F19 from chromosome 13, complete sequence Length = 184857 Score = 36.2 bits (18), Expect = 8.6 Identities = 18/18 (100%) Strand = Plus / Plus Query: 4 aataactgggttcattga 21 |||||||||||||||||| Sbjct: 31667 aataactgggttcattga 31684
>gb|AC152070.4| Pan troglodytes BAC clone RP43-135N21 from chromosome 7, complete sequence Length = 162075 Score = 36.2 bits (18), Expect = 8.6 Identities = 18/18 (100%) Strand = Plus / Minus Query: 2 aaaataactgggttcatt 19 |||||||||||||||||| Sbjct: 34522 aaaataactgggttcatt 34505
>gb|AC145619.4| Homo sapiens BAC clone RP11-722J20 from chromosome 2, complete sequence Length = 152973 Score = 36.2 bits (18), Expect = 8.6 Identities = 18/18 (100%) Strand = Plus / Minus Query: 26 aacaagggattacagcca 43 |||||||||||||||||| Sbjct: 145244 aacaagggattacagcca 145227
>gb|AC090983.13| Homo sapiens chromosome 15, clone RP11-385H1, complete sequence Length = 203244 Score = 36.2 bits (18), Expect = 8.6 Identities = 18/18 (100%) Strand = Plus / Minus Query: 15 tcattgaccccaacaagg 32 |||||||||||||||||| Sbjct: 136285 tcattgaccccaacaagg 136268
>gb|AY954970.1| Staphylococcus phage Twort, complete genome Length = 130706 Score = 36.2 bits (18), Expect = 8.6 Identities = 24/26 (92%) Strand = Plus / Plus Query: 2 aaaataactgggttcattgaccccaa 27 ||||||| ||||||||||||||||| Sbjct: 21581 aaaataaaagggttcattgaccccaa 21606
>gb|AC007448.14| Homo sapiens chromosome 17, clone RP11-401F2, complete sequence Length = 195558 Score = 36.2 bits (18), Expect = 8.6 Identities = 18/18 (100%) Strand = Plus / Minus Query: 34 attacagccaactgaaca 51 |||||||||||||||||| Sbjct: 160023 attacagccaactgaaca 160006
>gb|AC142232.2| Homo sapiens fosmid clone XXFOS-83793A7 from 2, complete sequence Length = 38599 Score = 36.2 bits (18), Expect = 8.6 Identities = 18/18 (100%) Strand = Plus / Minus Query: 26 aacaagggattacagcca 43 |||||||||||||||||| Sbjct: 32470 aacaagggattacagcca 32453
>dbj|BA000019.2| Nostoc sp. PCC 7120 DNA, complete genome Length = 6413771 Score = 36.2 bits (18), Expect = 8.6 Identities = 18/18 (100%) Strand = Plus / Minus Query: 28 caagggattacagccaac 45 |||||||||||||||||| Sbjct: 3805545 caagggattacagccaac 3805528 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 403,059 Number of Sequences: 3902068 Number of extensions: 403059 Number of successful extensions: 30847 Number of sequences better than 10.0: 16 Number of HSP's better than 10.0 without gapping: 16 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 30812 Number of HSP's gapped (non-prelim): 35 length of query: 60 length of database: 17,233,045,268 effective HSP length: 21 effective length of query: 39 effective length of database: 17,151,101,840 effective search space: 668892971760 effective search space used: 668892971760 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 18 (36.2 bits)