>gb|AF174004.1|AF174004 Triticum aestivum alternative oxidase mRNA, partial cds; nuclear gene
            for mitochondrial product
          Length = 1100

 Score =  303 bits (153), Expect = 2e-79
 Identities = 268/300 (89%), Gaps = 16/300 (5%)
 Strand = Plus / Minus

                                                                        
Query: 82   tggcgtaagccaaataggttcatctttga--gcgaaatgggggttcaacaatatcctaa- 138
            ||||||| |||||||||||||||||| ||  |||||| || |||||||||||||||||| 
Sbjct: 1069 tggcgtacgccaaataggttcatcttagatagcgaaacggtggttcaacaatatcctaat 1010

                                                                        
Query: 139  atacgtaactgacaagcacactgcttatttctcagtactcgatagttaccaaaggagcaa 198
            ||||| ||||||||||||||||| |||||||||||||||  |||||||||||||||||||
Sbjct: 1009 atacgcaactgacaagcacactgattatttctcagtactgaatagttaccaaaggagcaa 950

                                                                        
Query: 199  caattgcgacatcctatacagctaaag--agccctcatttcctcggaagcctt-caaaac 255
            ||||||| |||||||||||||||||||  ||| |||||||||||    ||||| ||||||
Sbjct: 949  caattgcaacatcctatacagctaaagatagctctcatttcctc---tgccttccaaaac 893

                                                                        
Query: 256  gaaacactcatttgcttg------gtagtagtagcgatgcaaaattcagcagaagacggc 309
            ||||||||||||||||||      ||||||| |||||||||||| ||||||||| |||||
Sbjct: 892  gaaacactcatttgcttggtggtagtagtagcagcgatgcaaaactcagcagaacacggc 833

                                                                        
Query: 310  caagcctcagtggtatccgatcggcgccggggtggccttcagctccataccctggtagta 369
            | ||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||
Sbjct: 832  c-agcctcagtggtatccgatcggcgctggggtggccttcagctgcataccctggtagta 774

>dbj|AB078882.1| Triticum aestivum mRNA for alternative oxidase, complete cds
          Length = 1119

 Score =  153 bits (77), Expect = 5e-34
 Identities = 116/129 (89%), Gaps = 10/129 (7%)
 Strand = Plus / Minus

                                                                        
Query: 250  caaaacgaaacactcatttgcttggt---------agtagtagcgatgcaaaattcagca 300
            ||||||||||||||||||||||||||         |||||||||| ||||||||||||||
Sbjct: 1096 caaaacgaaacactcatttgcttggtggtagtagcagtagtagcgttgcaaaattcagca 1037

                                                                        
Query: 301  gaagacggccaagcctcagtggtatccgatcggcgccggggtggccttcagctccatacc 360
            ||| ||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 1036 gaacacggcca-gcctcagtggtatccgatcggcgccggggtggccttcagctgcatacc 978

                     
Query: 361  ctggtagta 369
            |||||||||
Sbjct: 977  ctggtagta 969

>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 47/53 (88%)
 Strand = Plus / Plus

                                                                     
Query: 314      cctcagtggtatccgatcggcgccggggtggccttcagctccataccctggta 366
                |||||||| |||||||||||||| |||||   |||||||||||| ||||||||
Sbjct: 30321565 cctcagtgatatccgatcggcgcaggggtctgcttcagctccatgccctggta 30321617



 Score = 40.1 bits (20), Expect = 4.9
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                            
Query: 209      atcctatacagctaaagagccctcattt 236
                |||| ||||||||||||||| |||||||
Sbjct: 30321462 atccgatacagctaaagagctctcattt 30321489

>dbj|AK064040.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-125-C12, full
            insert sequence
          Length = 1471

 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 47/53 (88%)
 Strand = Plus / Minus

                                                                 
Query: 314  cctcagtggtatccgatcggcgccggggtggccttcagctccataccctggta 366
            |||||||| |||||||||||||| |||||   |||||||||||| ||||||||
Sbjct: 1104 cctcagtgatatccgatcggcgcaggggtctgcttcagctccatgccctggta 1052



 Score = 40.1 bits (20), Expect = 4.9
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                        
Query: 209  atcctatacagctaaagagccctcattt 236
            |||| ||||||||||||||| |||||||
Sbjct: 1207 atccgatacagctaaagagctctcattt 1180

>dbj|AB004813.1| Oryza sativa (japonica cultivar-group) AOX1b and AOX1a genes,
            complete cds
          Length = 7421

 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 47/53 (88%)
 Strand = Plus / Minus

                                                                 
Query: 314  cctcagtggtatccgatcggcgccggggtggccttcagctccataccctggta 366
            |||||||| |||||||||||||| |||||   |||||||||||| ||||||||
Sbjct: 6724 cctcagtgatatccgatcggcgcaggggtctgcttcagctccatgccctggta 6672



 Score = 40.1 bits (20), Expect = 4.9
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                        
Query: 209  atcctatacagctaaagagccctcattt 236
            |||| ||||||||||||||| |||||||
Sbjct: 6827 atccgatacagctaaagagctctcattt 6800

>emb|AL606683.3|OSJN00089 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0083N12,
             complete sequence
          Length = 160989

 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 47/53 (88%)
 Strand = Plus / Plus

                                                                  
Query: 314   cctcagtggtatccgatcggcgccggggtggccttcagctccataccctggta 366
             |||||||| |||||||||||||| |||||   |||||||||||| ||||||||
Sbjct: 71461 cctcagtgatatccgatcggcgcaggggtctgcttcagctccatgccctggta 71513



 Score = 40.1 bits (20), Expect = 4.9
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 209   atcctatacagctaaagagccctcattt 236
             |||| ||||||||||||||| |||||||
Sbjct: 71358 atccgatacagctaaagagctctcattt 71385

>dbj|AB007452.1| Oryza sativa mRNA for alternative oxidase, complete cds
          Length = 1256

 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 47/53 (88%)
 Strand = Plus / Minus

                                                                 
Query: 314  cctcagtggtatccgatcggcgccggggtggccttcagctccataccctggta 366
            |||||||| |||||||||||||| |||||   |||||||||||| ||||||||
Sbjct: 1085 cctcagtgatatccgatcggcgcaggggtctgcttcagctccatgccctggta 1033



 Score = 40.1 bits (20), Expect = 4.9
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                        
Query: 209  atcctatacagctaaagagccctcattt 236
            |||| ||||||||||||||| |||||||
Sbjct: 1188 atccgatacagctaaagagctctcattt 1161

>dbj|AB004864.1| Oryza sativa (japonica cultivar-group) AOX1a mRNA for alternative
            oxidase, complete cds
          Length = 1459

 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 47/53 (88%)
 Strand = Plus / Minus

                                                                 
Query: 314  cctcagtggtatccgatcggcgccggggtggccttcagctccataccctggta 366
            |||||||| |||||||||||||| |||||   |||||||||||| ||||||||
Sbjct: 1092 cctcagtgatatccgatcggcgcaggggtctgcttcagctccatgccctggta 1040



 Score = 40.1 bits (20), Expect = 4.9
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                        
Query: 209  atcctatacagctaaagagccctcattt 236
            |||| ||||||||||||||| |||||||
Sbjct: 1195 atccgatacagctaaagagctctcattt 1168

>dbj|AB189673.1| Dracunculus vulgaris DvAOX mRNA for alternative oxidase, complete cds
          Length = 1372

 Score = 56.0 bits (28), Expect = 8e-05
 Identities = 49/56 (87%)
 Strand = Plus / Minus

                                                                    
Query: 313  gcctcagtggtatccgatcggcgccggggtggccttcagctccataccctggtagt 368
            |||||||||||| |||| ||||||||| || | ||||||||| | |||||||||||
Sbjct: 1153 gcctcagtggtacccgagcggcgccggcgtcgtcttcagctcaagaccctggtagt 1098

>ref|XM_473757.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 999

 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 45/51 (88%)
 Strand = Plus / Minus

                                                              
Query: 316 tcagtggtatccgatcggcgccggggtggccttcagctccataccctggta 366
           |||||| |||||||||||||| |||||   |||||||||||| ||||||||
Sbjct: 999 tcagtgatatccgatcggcgcaggggtctgcttcagctccatgccctggta 949

>gb|AY644465.1| Saccharum officinarum mitochondrial alternative oxidase 1 mRNA,
            complete cds; nuclear gene for mitochondrial product
          Length = 1316

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 29/30 (96%)
 Strand = Plus / Minus

                                          
Query: 312  agcctcagtggtatccgatcggcgccgggg 341
            ||||||||||||||||||||||||| ||||
Sbjct: 1096 agcctcagtggtatccgatcggcgcagggg 1067

>gb|AY485264.1| Zea mays alternative oxidase 1a (Aox1a) gene, complete cds
          Length = 3361

 Score = 48.1 bits (24), Expect = 0.020
 Identities = 27/28 (96%)
 Strand = Plus / Minus

                                        
Query: 314  cctcagtggtatccgatcggcgccgggg 341
            ||||||||||||||||||||||| ||||
Sbjct: 3050 cctcagtggtatccgatcggcgcagggg 3023

>gb|AY059647.1| Zea mays alternative oxidase AOX2 precursor (Aox2) mRNA, nuclear gene
            encoding mitochondrial protein, complete cds~~
          Length = 1456

 Score = 48.1 bits (24), Expect = 0.020
 Identities = 27/28 (96%)
 Strand = Plus / Minus

                                        
Query: 314  cctcagtggtatccgatcggcgccgggg 341
            ||||||||||||||||||||||| ||||
Sbjct: 1099 cctcagtggtatccgatcggcgcagggg 1072

>gb|AY108791.1| Zea mays PCO108471 mRNA sequence
          Length = 1415

 Score = 48.1 bits (24), Expect = 0.020
 Identities = 27/28 (96%)
 Strand = Plus / Minus

                                        
Query: 314  cctcagtggtatccgatcggcgccgggg 341
            ||||||||||||||||||||||| ||||
Sbjct: 1113 cctcagtggtatccgatcggcgcagggg 1086

>gb|AC124653.5| Homo sapiens chromosome 11, clone RP11-100H14, complete sequence
          Length = 151313

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 52    atcaatgggggtctgacaacgaaaa 76
             |||||||||||||||||||| ||||
Sbjct: 45506 atcaatgggggtctgacaaccaaaa 45530



 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 52    atcaatgggggtctgacaac 71
             ||||||||||||||||||||
Sbjct: 21855 atcaatgggggtctgacaac 21836

>gb|AC107937.2| Homo sapiens chromosome 11, clone CTD1-2019H2, complete sequence
          Length = 79253

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 52   atcaatgggggtctgacaacgaaaa 76
            |||||||||||||||||||| ||||
Sbjct: 2940 atcaatgggggtctgacaaccaaaa 2916



 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 52    atcaatgggggtctgacaac 71
             ||||||||||||||||||||
Sbjct: 27114 atcaatgggggtctgacaac 27133

>gb|AC129501.3| Homo sapiens chromosome 11, clone RP11-1095K7, complete sequence
          Length = 179540

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 52    atcaatgggggtctgacaacgaaaa 76
             |||||||||||||||||||| ||||
Sbjct: 45520 atcaatgggggtctgacaaccaaaa 45544



 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 52    atcaatgggggtctgacaac 71
             ||||||||||||||||||||
Sbjct: 21871 atcaatgggggtctgacaac 21852

>dbj|AP006587.1| Homo sapiens genomic DNA, chromosome 11 clone:RP11-163O19, complete
             sequence
          Length = 172438

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 52    atcaatgggggtctgacaacgaaaa 76
             |||||||||||||||||||| ||||
Sbjct: 98002 atcaatgggggtctgacaaccaaaa 98026



 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 52    atcaatgggggtctgacaac 71
             ||||||||||||||||||||
Sbjct: 74348 atcaatgggggtctgacaac 74329

>gb|U73642.1|U73642 Human Chromosome 11 Cosmid cSRL30h11, complete sequence
          Length = 41032

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 52    atcaatgggggtctgacaacgaaaa 76
             |||||||||||||||||||| ||||
Sbjct: 13437 atcaatgggggtctgacaaccaaaa 13461

>dbj|AB065505.1| Homo sapiens gene for seven transmembrane helix receptor, complete cds,
             isolate:CBRC7TM_68
          Length = 60989

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 52    atcaatgggggtctgacaacgaaaa 76
             |||||||||||||||||||| ||||
Sbjct: 15449 atcaatgggggtctgacaaccaaaa 15425



 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 52    atcaatgggggtctgacaac 71
             ||||||||||||||||||||
Sbjct: 38670 atcaatgggggtctgacaac 38689

>ref|XM_644660.1| Entamoeba histolytica HM-1:IMSS hypothetical protein (274.t00013)
           partial mRNA
          Length = 744

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 249 tcaaaacgaaacactcattt 268
           ||||||||||||||||||||
Sbjct: 204 tcaaaacgaaacactcattt 223

>emb|CR407594.22| Zebrafish DNA sequence from clone DKEY-122C11 in linkage group 4,
             complete sequence
          Length = 160262

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 281   tagcgatgcaaaattcagca 300
             ||||||||||||||||||||
Sbjct: 20972 tagcgatgcaaaattcagca 20953

>gb|AC093151.2| Homo sapiens chromosome 1 clone RP11-399E6, complete sequence
          Length = 188276

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 142    cgtaactgacaagcacactg 161
              ||||||||||||||||||||
Sbjct: 119899 cgtaactgacaagcacactg 119918

>gb|AC013799.6| Homo sapiens, clone RP11-20J1, complete sequence
          Length = 186076

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 35    tgtacatagtgaggtagatcaatg 58
             ||||||||||||||||||| ||||
Sbjct: 59591 tgtacatagtgaggtagatgaatg 59568

>gb|CP000232.1| Moorella thermoacetica ATCC 39073, complete genome
          Length = 2628784

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 331     cggcgccggggtggccttca 350
               ||||||||||||||||||||
Sbjct: 1721041 cggcgccggggtggccttca 1721022


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,142,942
Number of Sequences: 3902068
Number of extensions: 3142942
Number of successful extensions: 61810
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 61732
Number of HSP's gapped (non-prelim): 73
length of query: 369
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 347
effective length of database: 17,147,199,772
effective search space: 5950078320884
effective search space used: 5950078320884
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)