Clone Information

BLAST Search Result

Clone Name	rbart15g05
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	emb\|AL161549.2\|ATCHRIV49 Arabidopsis thaliana DNA chromosome 4, ...	40	0.24
2	emb\|AL035526.1\|ATF28A21 Arabidopsis thaliana DNA chromosome 4, B...	40	0.24
3	gb\|AC168212.7\| Mus musculus chromosome 18, clone RP23-290N19, co...	38	0.95
4	emb\|AL133335.29\| Human DNA sequence from clone RP5-1162C3 on chr...	38	0.95
5	dbj\|AP008212.1\| Oryza sativa (japonica cultivar-group) genomic D...	38	0.95
6	dbj\|AP005852.2\| Oryza sativa (japonica cultivar-group) genomic D...	38	0.95
7	gb\|AC102255.10\| Mus musculus chromosome 18, clone RP24-182H11, c...	38	0.95
8	ref\|NM_201950.1\| Arabidopsis thaliana GLX2-1 (GLYOXALASE 2-1); h...	36	3.8
9	ref\|NM_129904.2\| Arabidopsis thaliana GLX2-1 (GLYOXALASE 2-1); h...	36	3.8
10	gb\|AF016670.2\| Caenorhabditis elegans cosmid K02F6, complete seq...	36	3.8
11	gb\|AC154844.2\| Mus musculus BAC clone RP23-46K13 from chromosome...	36	3.8
12	gb\|AC167971.3\| Mus musculus BAC clone RP24-439I22 from chromosom...	36	3.8
13	gb\|AC161260.2\| Mus musculus BAC clone RP23-448A11 from chromosom...	36	3.8
14	gb\|AC016792.5\| Drosophila melanogaster clone BACR26A02, complete...	36	3.8
15	gb\|AC007928.7\| Drosophila melanogaster clone BACR04O02, complete...	36	3.8
16	gb\|AF393466.1\| Uncultured crenarchaeote 74A4 partial genomic seq...	36	3.8
17	gb\|AC182697.2\| Populus trichocarpa clone Pop1-6M9, complete sequ...	36	3.8
18	gb\|AC112150.4\| Mus musculus BAC clone RP24-84I17 from chromosome...	36	3.8
19	emb\|CR847508.9\| Zebrafish DNA sequence from clone DKEY-235E19 in...	36	3.8
20	gb\|AC018464.9\| Homo sapiens BAC clone RP11-328M22 from 7, comple...	36	3.8
21	gb\|U13876.3\| Caenorhabditis elegans cosmid F57B9, complete sequence	36	3.8
22	emb\|AL928729.2\| Human DNA sequence from clone RP11-162I21 on chr...	36	3.8
23	emb\|AL354723.17\| Human DNA sequence from clone RP11-526D20 on ch...	36	3.8
24	emb\|AL139238.13\| Human DNA sequence from clone RP11-16O1 on chro...	36	3.8
25	emb\|AL136233.14\| Human DNA sequence from clone RP11-9E13 on chro...	36	3.8
26	gb\|AC131205.3\| Homo sapiens 12 BAC RP11-185H22 (Roswell Park Can...	36	3.8
27	gb\|AY063806.1\| Arabidopsis thaliana putative glyoxalase II (At2g...	36	3.8
28	emb\|AL096860.1\|ATT21L8 Arabidopsis thaliana DNA chromosome 3, BA...	36	3.8
29	emb\|BX908780.7\| Zebrafish DNA sequence from clone CH211-198K9 in...	36	3.8
30	gb\|AC007782.20\| Homo sapiens 12 BAC RP11-515B12 (Roswell Park Ca...	36	3.8
31	ref\|NM_200315.1\| Danio rerio zgc:56306 (zgc:56306), mRNA	36	3.8
32	emb\|BX649535.7\| Zebrafish DNA sequence from clone DKEY-234E12 in...	36	3.8
33	gb\|AC117397.2\| Homo sapiens 3 BAC RP11-92D20 (Roswell Park Cance...	36	3.8
34	emb\|BX664749.12\| Zebrafish DNA sequence from clone DKEY-53M7 in ...	36	3.8
35	gb\|AC148242.14\| Medicago truncatula clone mth2-18f6, complete se...	36	3.8
36	gb\|AC002335.3\| Arabidopsis thaliana chromosome 2 clone T1O24 map...	36	3.8
37	dbj\|AK143994.1\| Mus musculus adult male kidney cDNA, RIKEN full-...	36	3.8
38	gb\|AC021760.9\| Homo sapiens chromosome 8, clone RP11-433L7, comp...	36	3.8
39	gb\|AC024248.7\| Homo sapiens BAC clone RP11-659O3 from 4, complet...	36	3.8
40	gb\|AC022432.5\| Homo sapiens chromosome 19 clone CTD-3030D20, com...	36	3.8
41	gb\|AC023869.5\|AC023869 Homo sapiens chromosome 11, clone RP11-43...	36	3.8
42	emb\|BX004990.12\| Zebrafish DNA sequence from clone DKEY-12H12, c...	36	3.8
43	dbj\|AP008208.1\| Oryza sativa (japonica cultivar-group) genomic D...	36	3.8
44	dbj\|AP008207.1\| Oryza sativa (japonica cultivar-group) genomic D...	36	3.8
45	emb\|BX537294.4\| Zebrafish DNA sequence from clone DKEY-111K10 in...	36	3.8
46	emb\|BX004760.10\| Zebrafish DNA sequence from clone CH211-222O4 i...	36	3.8
47	gb\|AC020699.6\| Homo sapiens BAC clone RP11-131K17 from 4, comple...	36	3.8
48	gb\|AC062020.5\| Homo sapiens BAC clone RP11-154O23 from 2, comple...	36	3.8
49	gb\|AC135168.8\| Homo sapiens, clone CTD-2025E19, complete sequence	36	3.8
50	dbj\|AP003369.2\| Oryza sativa (japonica cultivar-group) genomic D...	36	3.8
51	dbj\|AP002870.1\| Oryza sativa (japonica cultivar-group) genomic D...	36	3.8
52	dbj\|AP004082.3\| Oryza sativa (japonica cultivar-group) genomic D...	36	3.8
53	gb\|AC155885.2\| Medicago truncatula chromosome 7 BAC clone mth2-1...	36	3.8
54	gb\|BC050518.1\| Danio rerio zgc:56306, mRNA (cDNA clone MGC:56306...	36	3.8
55	emb\|BX296516.3\| Zebrafish DNA sequence from clone DKEY-219E20 in...	36	3.8
56	gb\|AE003704.3\| Drosophila melanogaster chromosome 3R, section 42...	36	3.8
57	emb\|Z19157.1\|CEZC84 Caenorhabditis elegans Cosmid ZC84, complete...	36	3.8
58	gb\|U90928.1\|ATU90928 Arabidopsis thaliana glyoxalase II mitochon...	36	3.8
59	gb\|U90927.1\|ATU90927 Arabidopsis thaliana glyoxalase II isozyme ...	36	3.8
60	emb\|CT010508.10\| Mouse DNA sequence from clone RP23-250G8 on chr...	36	3.8
61	gb\|AC163696.3\| Ornithorhynchus anatinus BAC clone OABb-153I22 fr...	36	3.8
62	emb\|AL953872.7\| Zebrafish DNA sequence from clone CH211-235H23, ...	36	3.8
63	gb\|AC003114.1\|T12M4 Arabidopsis thaliana chromosome 1 BAC T12M4 ...	36	3.8
64	gb\|AC124707.4\| Mus musculus BAC clone RP24-73H16 from 12, comple...	36	3.8
65	emb\|AL929308.5\| Zebrafish DNA sequence from clone CH211-93M8, co...	36	3.8
66	gb\|AC134772.2\| Homo sapiens chromosome 3 clone RP13-794C1, compl...	36	3.8
67	emb\|AL928875.4\| Zebrafish DNA sequence from clone CH211-114C12, ...	36	3.8

>emb|AL161549.2|ATCHRIV49 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 49
          Length = 199075

 Score = 40.1 bits (20), Expect = 0.24
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 8     ataaactaaatatttagttt 27
             ||||||||||||||||||||
Sbjct: 64933 ataaactaaatatttagttt 64952



 Score = 38.2 bits (19), Expect = 0.95
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 9     taaactaaatatttagttt 27
             |||||||||||||||||||
Sbjct: 64953 taaactaaatatttagttt 64935

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>emb|AL035526.1|ATF28A21 Arabidopsis thaliana DNA chromosome 4, BAC clone F28A21 (ESSA project)
          Length = 94301

 Score = 40.1 bits (20), Expect = 0.24
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 8     ataaactaaatatttagttt 27
             ||||||||||||||||||||
Sbjct: 45652 ataaactaaatatttagttt 45671



 Score = 38.2 bits (19), Expect = 0.95
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 9     taaactaaatatttagttt 27
             |||||||||||||||||||
Sbjct: 45672 taaactaaatatttagttt 45654

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>gb|AC168212.7| Mus musculus chromosome 18, clone RP23-290N19, complete sequence
          Length = 197719

 Score = 38.2 bits (19), Expect = 0.95
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 5     ggaataaactaaatattta 23
             |||||||||||||||||||
Sbjct: 17244 ggaataaactaaatattta 17226

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>emb|AL133335.29| Human DNA sequence from clone RP5-1162C3 on chromosome 20 Contains the
             PFDN4 gene for prefoldin 4 and two CpG islands, complete
             sequence
          Length = 101961

 Score = 38.2 bits (19), Expect = 0.95
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 9     taaactaaatatttagttt 27
             |||||||||||||||||||
Sbjct: 26522 taaactaaatatttagttt 26540



 Score = 36.2 bits (18), Expect = 3.8
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                               
Query: 10    aaactaaatatttagttt 27
             ||||||||||||||||||
Sbjct: 26540 aaactaaatatttagttt 26523

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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 38.2 bits (19), Expect = 0.95
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                   
Query: 7        aataaactaaatatttagt 25
                |||||||||||||||||||
Sbjct: 11579320 aataaactaaatatttagt 11579302

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>dbj|AP005852.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0414E10
          Length = 141760

 Score = 38.2 bits (19), Expect = 0.95
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 7     aataaactaaatatttagt 25
             |||||||||||||||||||
Sbjct: 57206 aataaactaaatatttagt 57188

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>gb|AC102255.10| Mus musculus chromosome 18, clone RP24-182H11, complete sequence
          Length = 195275

 Score = 38.2 bits (19), Expect = 0.95
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 5     ggaataaactaaatattta 23
             |||||||||||||||||||
Sbjct: 79184 ggaataaactaaatattta 79166

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>ref|NM_201950.1| Arabidopsis thaliana GLX2-1 (GLYOXALASE 2-1); hydroxyacylglutathione
            hydrolase AT2G43430 (GLX2-1) transcript variant
            AT2G43430.2 mRNA, complete cds
          Length = 1746

 Score = 36.2 bits (18), Expect = 3.8
 Identities = 21/22 (95%)
 Strand = Plus / Plus

                                  
Query: 13   ctaaatatttagtttcaactca 34
            ||||||||||||||| ||||||
Sbjct: 1698 ctaaatatttagtttaaactca 1719

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>ref|NM_129904.2| Arabidopsis thaliana GLX2-1 (GLYOXALASE 2-1); hydroxyacylglutathione
            hydrolase AT2G43430 (GLX2-1) transcript variant
            AT2G43430.1 mRNA, complete cds
          Length = 1387

 Score = 36.2 bits (18), Expect = 3.8
 Identities = 21/22 (95%)
 Strand = Plus / Plus

                                  
Query: 13   ctaaatatttagtttcaactca 34
            ||||||||||||||| ||||||
Sbjct: 1319 ctaaatatttagtttaaactca 1340

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>gb|AF016670.2| Caenorhabditis elegans cosmid K02F6, complete sequence
          Length = 38689

 Score = 36.2 bits (18), Expect = 3.8
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                               
Query: 17    atatttagtttcaactca 34
             ||||||||||||||||||
Sbjct: 13544 atatttagtttcaactca 13561

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>gb|AC154844.2| Mus musculus BAC clone RP23-46K13 from chromosome 16, complete sequence
          Length = 196946

 Score = 36.2 bits (18), Expect = 3.8
 Identities = 21/22 (95%)
 Strand = Plus / Minus

                                    
Query: 7      aataaactaaatatttagtttc 28
              |||||||| |||||||||||||
Sbjct: 145967 aataaactgaatatttagtttc 145946

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>gb|AC167971.3| Mus musculus BAC clone RP24-439I22 from chromosome 7, complete sequence
          Length = 198057

 Score = 36.2 bits (18), Expect = 3.8
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                               
Query: 7     aataaactaaatatttag 24
             ||||||||||||||||||
Sbjct: 76922 aataaactaaatatttag 76939

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>gb|AC161260.2| Mus musculus BAC clone RP23-448A11 from chromosome 9, complete sequence
          Length = 190608

 Score = 36.2 bits (18), Expect = 3.8
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                               
Query: 14    taaatatttagtttcaac 31
             ||||||||||||||||||
Sbjct: 67650 taaatatttagtttcaac 67667

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>gb|AC016792.5| Drosophila melanogaster clone BACR26A02, complete sequence
          Length = 164971

 Score = 36.2 bits (18), Expect = 3.8
 Identities = 21/22 (95%)
 Strand = Plus / Minus

                                   
Query: 11    aactaaatatttagtttcaact 32
             |||||||||||||||| |||||
Sbjct: 14165 aactaaatatttagttccaact 14144

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>gb|AC007928.7| Drosophila melanogaster clone BACR04O02, complete sequence
          Length = 176395

 Score = 36.2 bits (18), Expect = 3.8
 Identities = 21/22 (95%)
 Strand = Plus / Minus

                                    
Query: 11     aactaaatatttagtttcaact 32
              |||||||||||||||| |||||
Sbjct: 140748 aactaaatatttagttccaact 140727

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>gb|AF393466.1| Uncultured crenarchaeote 74A4 partial genomic sequence
          Length = 43902

 Score = 36.2 bits (18), Expect = 3.8
 Identities = 21/22 (95%)
 Strand = Plus / Minus

                                   
Query: 9     taaactaaatatttagtttcaa 30
             ||||||||||||||| ||||||
Sbjct: 38629 taaactaaatatttattttcaa 38608

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>gb|AC182697.2| Populus trichocarpa clone Pop1-6M9, complete sequence
          Length = 58709

 Score = 36.2 bits (18), Expect = 3.8
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                               
Query: 1     gggaggaataaactaaat 18
             ||||||||||||||||||
Sbjct: 35486 gggaggaataaactaaat 35503

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>gb|AC112150.4| Mus musculus BAC clone RP24-84I17 from chromosome 16, complete sequence
          Length = 211640

 Score = 36.2 bits (18), Expect = 3.8
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                                
Query: 3      gaggaataaactaaatat 20
              ||||||||||||||||||
Sbjct: 190664 gaggaataaactaaatat 190681

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>emb|CR847508.9| Zebrafish DNA sequence from clone DKEY-235E19 in linkage group 9,
             complete sequence
          Length = 62311

 Score = 36.2 bits (18), Expect = 3.8
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                               
Query: 8     ataaactaaatatttagt 25
             ||||||||||||||||||
Sbjct: 11676 ataaactaaatatttagt 11693

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>gb|AC018464.9| Homo sapiens BAC clone RP11-328M22 from 7, complete sequence
          Length = 155862

 Score = 36.2 bits (18), Expect = 3.8
 Identities = 21/22 (95%)
 Strand = Plus / Minus

                                    
Query: 7      aataaactaaatatttagtttc 28
              ||||||||||||| ||||||||
Sbjct: 119270 aataaactaaataattagtttc 119249

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>gb|U13876.3| Caenorhabditis elegans cosmid F57B9, complete sequence
          Length = 39112

 Score = 36.2 bits (18), Expect = 3.8
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                               
Query: 13    ctaaatatttagtttcaa 30
             ||||||||||||||||||
Sbjct: 23720 ctaaatatttagtttcaa 23737

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>emb|AL928729.2| Human DNA sequence from clone RP11-162I21 on chromosome 10 Contains a
             novel gene and the 5' end of the MRC1 gene for mannose
             receptor C type 1, complete sequence
          Length = 98910

 Score = 36.2 bits (18), Expect = 3.8
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                               
Query: 18    tatttagtttcaactcat 35
             ||||||||||||||||||
Sbjct: 41159 tatttagtttcaactcat 41142

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>emb|AL354723.17| Human DNA sequence from clone RP11-526D20 on chromosome 9 Contains the
             gene for voltage-gated potassium channel (Kv11.1), the 3'
             end of gene KIAA0020 and a CpG island, complete sequence
          Length = 159933

 Score = 36.2 bits (18), Expect = 3.8
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                               
Query: 1     gggaggaataaactaaat 18
             ||||||||||||||||||
Sbjct: 90072 gggaggaataaactaaat 90055

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>emb|AL139238.13| Human DNA sequence from clone RP11-16O1 on chromosome 10 Contains a
             novel gene and the 5' end of the gene for a novel protein
             similar to mannose receptor C type 1 (MRC1), complete
             sequence
          Length = 106029

 Score = 36.2 bits (18), Expect = 3.8
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                               
Query: 18    tatttagtttcaactcat 35
             ||||||||||||||||||
Sbjct: 43127 tatttagtttcaactcat 43110

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>emb|AL136233.14| Human DNA sequence from clone RP11-9E13 on chromosome 10 Contains the
             5' end of the RUFY2 gene for RUN and FYVE domain
             containing 2 (FLJ36895, FLJ10063), the DNA2L gene for DNA2
             DNA replication helicase 2-like (yeast) (KIAA0083), a
             ribosomal protein L26 (RPL26) pseudogene, a novel gene and
             two CpG islands, complete sequence
          Length = 138733

 Score = 36.2 bits (18), Expect = 3.8
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                               
Query: 14    taaatatttagtttcaac 31
             ||||||||||||||||||
Sbjct: 57769 taaatatttagtttcaac 57786

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>gb|AC131205.3| Homo sapiens 12 BAC RP11-185H22 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 110790

 Score = 36.2 bits (18), Expect = 3.8
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                               
Query: 5     ggaataaactaaatattt 22
             ||||||||||||||||||
Sbjct: 23635 ggaataaactaaatattt 23618

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>gb|AY063806.1| Arabidopsis thaliana putative glyoxalase II (At2g43430) mRNA,
            complete cds
          Length = 1348

 Score = 36.2 bits (18), Expect = 3.8
 Identities = 21/22 (95%)
 Strand = Plus / Plus

                                  
Query: 13   ctaaatatttagtttcaactca 34
            ||||||||||||||| ||||||
Sbjct: 1283 ctaaatatttagtttaaactca 1304

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>emb|AL096860.1|ATT21L8 Arabidopsis thaliana DNA chromosome 3, BAC clone T21L8
          Length = 87224

 Score = 36.2 bits (18), Expect = 3.8
 Identities = 24/26 (92%)
 Strand = Plus / Plus

                                       
Query: 7     aataaactaaatatttagtttcaact 32
             ||||| ||||||||||||||| ||||
Sbjct: 77715 aataatctaaatatttagtttgaact 77740

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>emb|BX908780.7| Zebrafish DNA sequence from clone CH211-198K9 in linkage group 1,
             complete sequence
          Length = 199679

 Score = 36.2 bits (18), Expect = 3.8
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                               
Query: 7     aataaactaaatatttag 24
             ||||||||||||||||||
Sbjct: 68298 aataaactaaatatttag 68281

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>gb|AC007782.20| Homo sapiens 12 BAC RP11-515B12 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 166083

 Score = 36.2 bits (18), Expect = 3.8
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                                
Query: 4      aggaataaactaaatatt 21
              ||||||||||||||||||
Sbjct: 124344 aggaataaactaaatatt 124327

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>ref|NM_200315.1| Danio rerio zgc:56306 (zgc:56306), mRNA
          Length = 4194

 Score = 36.2 bits (18), Expect = 3.8
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                              
Query: 7    aataaactaaatatttag 24
            ||||||||||||||||||
Sbjct: 3872 aataaactaaatatttag 3855

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>emb|BX649535.7| Zebrafish DNA sequence from clone DKEY-234E12 in linkage group 3,
             complete sequence
          Length = 151079

 Score = 36.2 bits (18), Expect = 3.8
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                               
Query: 12    actaaatatttagtttca 29
             ||||||||||||||||||
Sbjct: 34471 actaaatatttagtttca 34454

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>gb|AC117397.2| Homo sapiens 3 BAC RP11-92D20 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 128398

 Score = 36.2 bits (18), Expect = 3.8
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                               
Query: 12    actaaatatttagtttca 29
             ||||||||||||||||||
Sbjct: 88985 actaaatatttagtttca 88968

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>emb|BX664749.12| Zebrafish DNA sequence from clone DKEY-53M7 in linkage group 5, complete
              sequence
          Length = 181789

 Score = 36.2 bits (18), Expect = 3.8
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                                
Query: 6      gaataaactaaatattta 23
              ||||||||||||||||||
Sbjct: 151805 gaataaactaaatattta 151822

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>gb|AC148242.14| Medicago truncatula clone mth2-18f6, complete sequence
          Length = 125077

 Score = 36.2 bits (18), Expect = 3.8
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                               
Query: 15    aaatatttagtttcaact 32
             ||||||||||||||||||
Sbjct: 50150 aaatatttagtttcaact 50167

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>gb|AC002335.3| Arabidopsis thaliana chromosome 2 clone T1O24 map CIC10F02, complete
             sequence
          Length = 102057

 Score = 36.2 bits (18), Expect = 3.8
 Identities = 21/22 (95%)
 Strand = Plus / Minus

                                   
Query: 13    ctaaatatttagtttcaactca 34
             ||||||||||||||| ||||||
Sbjct: 50343 ctaaatatttagtttaaactca 50322

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>dbj|AK143994.1| Mus musculus adult male kidney cDNA, RIKEN full-length enriched
            library, clone:F530014I15 product:hypothetical protein,
            full insert sequence
          Length = 3452

 Score = 36.2 bits (18), Expect = 3.8
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                              
Query: 3    gaggaataaactaaatat 20
            ||||||||||||||||||
Sbjct: 3088 gaggaataaactaaatat 3105

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>gb|AC021760.9| Homo sapiens chromosome 8, clone RP11-433L7, complete sequence
          Length = 183059

 Score = 36.2 bits (18), Expect = 3.8
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                               
Query: 13    ctaaatatttagtttcaa 30
             ||||||||||||||||||
Sbjct: 42453 ctaaatatttagtttcaa 42436

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>gb|AC024248.7| Homo sapiens BAC clone RP11-659O3 from 4, complete sequence
          Length = 202340

 Score = 36.2 bits (18), Expect = 3.8
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                               
Query: 6     gaataaactaaatattta 23
             ||||||||||||||||||
Sbjct: 12835 gaataaactaaatattta 12852

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>gb|AC022432.5| Homo sapiens chromosome 19 clone CTD-3030D20, complete sequence
          Length = 102223

 Score = 36.2 bits (18), Expect = 3.8
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                               
Query: 6     gaataaactaaatattta 23
             ||||||||||||||||||
Sbjct: 27638 gaataaactaaatattta 27655

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>gb|AC023869.5|AC023869 Homo sapiens chromosome 11, clone RP11-436B24, complete sequence
          Length = 181765

 Score = 36.2 bits (18), Expect = 3.8
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                                
Query: 15     aaatatttagtttcaact 32
              ||||||||||||||||||
Sbjct: 175093 aaatatttagtttcaact 175110

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>emb|BX004990.12| Zebrafish DNA sequence from clone DKEY-12H12, complete sequence
          Length = 201461

 Score = 36.2 bits (18), Expect = 3.8
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                               
Query: 6     gaataaactaaatattta 23
             ||||||||||||||||||
Sbjct: 62869 gaataaactaaatattta 62886

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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 36.2 bits (18), Expect = 3.8
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                                  
Query: 12       actaaatatttagtttca 29
                ||||||||||||||||||
Sbjct: 35743330 actaaatatttagtttca 35743347

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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 36.2 bits (18), Expect = 3.8
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                                  
Query: 7        aataaactaaatatttag 24
                ||||||||||||||||||
Sbjct: 14207815 aataaactaaatatttag 14207798

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>emb|BX537294.4| Zebrafish DNA sequence from clone DKEY-111K10 in linkage group 5,
              complete sequence
          Length = 204048

 Score = 36.2 bits (18), Expect = 3.8
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                                
Query: 6      gaataaactaaatattta 23
              ||||||||||||||||||
Sbjct: 163499 gaataaactaaatattta 163482

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>emb|BX004760.10| Zebrafish DNA sequence from clone CH211-222O4 in linkage group 3,
             complete sequence
          Length = 190220

 Score = 36.2 bits (18), Expect = 3.8
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                               
Query: 4     aggaataaactaaatatt 21
             ||||||||||||||||||
Sbjct: 61241 aggaataaactaaatatt 61224

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>gb|AC020699.6| Homo sapiens BAC clone RP11-131K17 from 4, complete sequence
          Length = 186961

 Score = 36.2 bits (18), Expect = 3.8
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                                
Query: 9      taaactaaatatttagtt 26
              ||||||||||||||||||
Sbjct: 168756 taaactaaatatttagtt 168773

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>gb|AC062020.5| Homo sapiens BAC clone RP11-154O23 from 2, complete sequence
          Length = 170197

 Score = 36.2 bits (18), Expect = 3.8
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                                
Query: 15     aaatatttagtttcaact 32
              ||||||||||||||||||
Sbjct: 112097 aaatatttagtttcaact 112080

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>gb|AC135168.8| Homo sapiens, clone CTD-2025E19, complete sequence
          Length = 125231

 Score = 36.2 bits (18), Expect = 3.8
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                               
Query: 15    aaatatttagtttcaact 32
             ||||||||||||||||||
Sbjct: 31714 aaatatttagtttcaact 31731

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>dbj|AP003369.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
              clone:B1102E12
          Length = 155692

 Score = 36.2 bits (18), Expect = 3.8
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                                
Query: 7      aataaactaaatatttag 24
              ||||||||||||||||||
Sbjct: 147529 aataaactaaatatttag 147512

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>dbj|AP002870.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
            clone:P0458A05
          Length = 120593

 Score = 36.2 bits (18), Expect = 3.8
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                              
Query: 7    aataaactaaatatttag 24
            ||||||||||||||||||
Sbjct: 3505 aataaactaaatatttag 3488

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>dbj|AP004082.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1149_C12
          Length = 120743

 Score = 36.2 bits (18), Expect = 3.8
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                               
Query: 12    actaaatatttagtttca 29
             ||||||||||||||||||
Sbjct: 14045 actaaatatttagtttca 14062

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>gb|AC155885.2| Medicago truncatula chromosome 7 BAC clone mth2-10p23, complete
             sequence
          Length = 116747

 Score = 36.2 bits (18), Expect = 3.8
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                               
Query: 20    tttagtttcaactcataa 37
             ||||||||||||||||||
Sbjct: 70802 tttagtttcaactcataa 70785

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>gb|BC050518.1| Danio rerio zgc:56306, mRNA (cDNA clone MGC:56306 IMAGE:5603140),
            complete cds
          Length = 4194

 Score = 36.2 bits (18), Expect = 3.8
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                              
Query: 7    aataaactaaatatttag 24
            ||||||||||||||||||
Sbjct: 3872 aataaactaaatatttag 3855

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>emb|BX296516.3| Zebrafish DNA sequence from clone DKEY-219E20 in linkage group 20,
              complete sequence
          Length = 160555

 Score = 36.2 bits (18), Expect = 3.8
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                                
Query: 4      aggaataaactaaatatt 21
              ||||||||||||||||||
Sbjct: 137156 aggaataaactaaatatt 137139

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>gb|AE003704.3| Drosophila melanogaster chromosome 3R, section 42 of 118 of the complete
              sequence
          Length = 220679

 Score = 36.2 bits (18), Expect = 3.8
 Identities = 21/22 (95%)
 Strand = Plus / Plus

                                    
Query: 11     aactaaatatttagtttcaact 32
              |||||||||||||||| |||||
Sbjct: 164955 aactaaatatttagttccaact 164976

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>emb|Z19157.1|CEZC84 Caenorhabditis elegans Cosmid ZC84, complete sequence
          Length = 38955

 Score = 36.2 bits (18), Expect = 3.8
 Identities = 21/22 (95%)
 Strand = Plus / Minus

                                   
Query: 15    aaatatttagtttcaactcata 36
             ||||||| ||||||||||||||
Sbjct: 37389 aaatattaagtttcaactcata 37368

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>gb|U90928.1|ATU90928 Arabidopsis thaliana glyoxalase II mitochondrial isozyme (Glx2-1)
            mRNA, nuclear gene encoding mitochondrial protein,
            complete cds
          Length = 1404

 Score = 36.2 bits (18), Expect = 3.8
 Identities = 21/22 (95%)
 Strand = Plus / Plus

                                  
Query: 13   ctaaatatttagtttcaactca 34
            ||||||||||||||| ||||||
Sbjct: 1317 ctaaatatttagtttaaactca 1338

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>gb|U90927.1|ATU90927 Arabidopsis thaliana glyoxalase II isozyme (Glx2-1) gene, nuclear
            gene encoding mitochondrial protein, complete cds
          Length = 6570

 Score = 36.2 bits (18), Expect = 3.8
 Identities = 21/22 (95%)
 Strand = Plus / Plus

                                  
Query: 13   ctaaatatttagtttcaactca 34
            ||||||||||||||| ||||||
Sbjct: 5904 ctaaatatttagtttaaactca 5925

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>emb|CT010508.10| Mouse DNA sequence from clone RP23-250G8 on chromosome 9, complete
             sequence
          Length = 223547

 Score = 36.2 bits (18), Expect = 3.8
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                               
Query: 14    taaatatttagtttcaac 31
             ||||||||||||||||||
Sbjct: 52134 taaatatttagtttcaac 52117

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>gb|AC163696.3| Ornithorhynchus anatinus BAC clone OABb-153I22 from chromosome unknown,
              complete sequence
          Length = 139018

 Score = 36.2 bits (18), Expect = 3.8
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                                
Query: 6      gaataaactaaatattta 23
              ||||||||||||||||||
Sbjct: 117593 gaataaactaaatattta 117610

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>emb|AL953872.7| Zebrafish DNA sequence from clone CH211-235H23, complete sequence
          Length = 164584

 Score = 36.2 bits (18), Expect = 3.8
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                               
Query: 6     gaataaactaaatattta 23
             ||||||||||||||||||
Sbjct: 15472 gaataaactaaatattta 15455

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>gb|AC003114.1|T12M4 Arabidopsis thaliana chromosome 1 BAC T12M4 sequence, complete sequence
          Length = 59261

 Score = 36.2 bits (18), Expect = 3.8
 Identities = 21/22 (95%)
 Strand = Plus / Minus

                                   
Query: 16    aatatttagtttcaactcataa 37
             |||||||||| |||||||||||
Sbjct: 13848 aatatttagtgtcaactcataa 13827

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>gb|AC124707.4| Mus musculus BAC clone RP24-73H16 from 12, complete sequence
          Length = 196237

 Score = 36.2 bits (18), Expect = 3.8
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                               
Query: 14    taaatatttagtttcaac 31
             ||||||||||||||||||
Sbjct: 83886 taaatatttagtttcaac 83903

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>emb|AL929308.5| Zebrafish DNA sequence from clone CH211-93M8, complete sequence
          Length = 168467

 Score = 36.2 bits (18), Expect = 3.8
 Identities = 21/22 (95%)
 Strand = Plus / Plus

                                   
Query: 9     taaactaaatatttagtttcaa 30
             |||| |||||||||||||||||
Sbjct: 97671 taaaataaatatttagtttcaa 97692

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>gb|AC134772.2| Homo sapiens chromosome 3 clone RP13-794C1, complete sequence
          Length = 177231

 Score = 36.2 bits (18), Expect = 3.8
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                                
Query: 10     aaactaaatatttagttt 27
              ||||||||||||||||||
Sbjct: 122854 aaactaaatatttagttt 122837



 Score = 36.2 bits (18), Expect = 3.8
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                                
Query: 10     aaactaaatatttagttt 27
              ||||||||||||||||||
Sbjct: 122837 aaactaaatatttagttt 122854

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>emb|AL928875.4| Zebrafish DNA sequence from clone CH211-114C12, complete sequence
          Length = 158038

 Score = 36.2 bits (18), Expect = 3.8
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                               
Query: 15    aaatatttagtttcaact 32
             ||||||||||||||||||
Sbjct: 28151 aaatatttagtttcaact 28168


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 514,844
Number of Sequences: 3902068
Number of extensions: 514844
Number of successful extensions: 154892
Number of sequences better than 10.0: 67
Number of HSP's better than 10.0 without gapping: 67
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 154530
Number of HSP's gapped (non-prelim): 362
length of query: 37
length of database: 17,233,045,268
effective HSP length: 20
effective length of query: 17
effective length of database: 17,155,003,908
effective search space: 291635066436
effective search space used: 291635066436
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 18 (36.2 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result