ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart15f12
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AY104371.1| Zea mays PCO121406 mRNA sequence 202 7e-49
2gb|AY111082.1| Zea mays CL35819_1 mRNA sequence 186 4e-44
3ref|XM_550488.1| Oryza sativa (japonica cultivar-group), mRNA 82 2e-12
4dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 82 2e-12
5dbj|AP001552.1| Oryza sativa (japonica cultivar-group) geneomic ... 82 2e-12
6dbj|AK104301.1| Oryza sativa (japonica cultivar-group) cDNA clon... 82 2e-12
7dbj|AK099246.1| Oryza sativa (japonica cultivar-group) cDNA clon... 82 2e-12
8dbj|AK074027.1| Oryza sativa (japonica cultivar-group) cDNA clon... 82 2e-12
9dbj|AK061483.1| Oryza sativa (japonica cultivar-group) cDNA clon... 82 2e-12
10gb|AC183492.1| Brassica oleracea Contig G, complete sequence 60 7e-06
11emb|AL731579.4|OSJN00225 Oryza sativa genomic DNA, chromosome 4,... 54 4e-04
12emb|AL662952.6|OSJN00151 Oryza sativa genomic DNA, chromosome 4,... 54 4e-04
13dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 54 4e-04
14dbj|AK067019.1| Oryza sativa (japonica cultivar-group) cDNA clon... 54 4e-04
15gb|BT014424.1| Lycopersicon esculentum clone 133742F, mRNA sequence 50 0.007
16gb|AY105917.1| Zea mays PCO144852 mRNA sequence 44 0.41
17gb|AE014292.2| Brucella suis 1330 chromosome II, complete sequence 42 1.6
18gb|AC129330.4| Mus musculus BAC clone RP23-61B8 from chromosome ... 42 1.6
19gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 42 1.6
20gb|AC091751.2| Gallus gallus clone WAG-71G10, complete sequence 42 1.6
21emb|BX511037.9| Zebrafish DNA sequence from clone DKEY-66N24 in ... 42 1.6
22gb|DP000061.1| Monodelphis domestica target 117 genomic scaffold 42 1.6
23gb|AC092558.4| Oryza sativa chromosome 3 BAC OSJNBb0036F07 genom... 42 1.6
24dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.6
25gb|AE009671.1| Brucella melitensis 16M chromosome II, section 33... 42 1.6
26ref|NM_204131.1| Gallus gallus LIM domain kinase 1 (LIMK1), mRNA 42 1.6
27dbj|BA000019.2| Nostoc sp. PCC 7120 DNA, complete genome 42 1.6
28gb|AE017224.1| Brucella abortus biovar 1 str. 9-941 chromosome I... 42 1.6
29dbj|AK072451.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 1.6
30emb|AM040265.1| Brucella melitensis biovar Abortus chromosome II... 42 1.6
31dbj|AP002091.2| Homo sapiens genomic DNA, chromosome 6q25.2, clo... 42 1.6
32dbj|AB073752.1| Gallus gallus limk1 mRNA for LIM kinase 1, compl... 42 1.6
33gb|AC119899.8| Mus musculus chromosome 5, clone RP24-235E5, comp... 40 6.4
34gb|AE007283.1| Sinorhizobium meliloti 1021 plasmid pSymA section... 40 6.4
35ref|XM_382043.1| Gibberella zeae PH-1 chromosome 1 hypothetical ... 40 6.4
36ref|XM_649544.1| Entamoeba histolytica HM-1:IMSS protein kinase ... 40 6.4
37gb|AC149080.14| Medicago truncatula clone mth2-75j5, complete se... 40 6.4
38emb|BX572604.1| Rhodopseudomonas palustris CGA009 complete genom... 40 6.4
39emb|CR392367.6| Zebrafish DNA sequence from clone CH211-144A4 in... 40 6.4
40emb|BX276104.14| Mouse DNA sequence from clone RP24-313E3 on chr... 40 6.4
41gb|AC150843.16| Medicago truncatula clone mth2-103p8, complete s... 40 6.4
42dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete ... 40 6.4
43gb|DQ337861.1| Uncultured bacterium clone Psedi_nirS-22 NirS (ni... 40 6.4
44gb|DQ337837.1| Uncultured bacterium clone P1m_nirS-08 NirS (nirS... 40 6.4
45gb|AC034268.4| Homo sapiens chromosome 17, clone RP11-312B18, co... 40 6.4
46gb|AC012173.9| Homo sapiens chromosome 16 clone RP11-152P23, com... 40 6.4
47emb|AL929009.5| Zebrafish DNA sequence from clone CH211-202A8 in... 40 6.4
48emb|CR854847.7| Zebrafish DNA sequence from clone DKEY-266L9 in ... 40 6.4
49gb|AC004050.1|AC004050 Homo sapiens chromosome 4 clone B207D4 ma... 40 6.4
50gb|AC154192.3| Mus musculus BAC clone RP24-70F14 from chromosome... 40 6.4
51gb|AF020713.1|AF020713 Bacteriophage SPBc2 complete genome 40 6.4
52emb|CT025551.9| Mouse DNA sequence from clone RP23-414I10 on chr... 40 6.4
53emb|Z99115.2|BSUB0012 Bacillus subtilis complete genome (section... 40 6.4 
>gb|AY104371.1| Zea mays PCO121406 mRNA sequence
          Length = 1266

 Score =  202 bits (102), Expect = 7e-49
 Identities = 150/166 (90%)
 Strand = Plus / Minus

                                                                       
Query: 310 ccggagcccttctgctgctcctcggccgacatcttctccttcgtcatcgtgccgacatct 369
           ||||||||||| || ||||||||||| | |||||||||||| |||||||| ||||| || 
Sbjct: 920 ccggagcccttgtgatgctcctcggcggccatcttctccttggtcatcgtcccgacgtcc 861

                                                                       
Query: 370 gtggcggccttggcgaccttgccgaacgcgctggtcacccatgacgcgctggtgaagaca 429
           ||||||| |||||||||||||  |||||||||||| ||||||||||||| ||||||||||
Sbjct: 860 gtggcggtcttggcgaccttgttgaacgcgctggtgacccatgacgcgccggtgaagaca 801

                                                         
Query: 430 tacctgttcttcatgatggcagacccggcgttgctcaccgtctgct 475
           |||||||||||||||||||||||||||||  |||||||| ||||||
Sbjct: 800 tacctgttcttcatgatggcagacccggcactgctcaccttctgct 755
to top
>gb|AY111082.1| Zea mays CL35819_1 mRNA sequence
          Length = 588

 Score =  186 bits (94), Expect = 4e-44
 Identities = 145/162 (89%)
 Strand = Plus / Plus

                                                                       
Query: 314 agcccttctgctgctcctcggccgacatcttctccttcgtcatcgtgccgacatctgtgg 373
           |||||||||||||||||||||||| |||||||||||| ||||| || ||||| || ||||
Sbjct: 383 agcccttctgctgctcctcggccgccatcttctccttggtcattgtcccgacgtccgtgg 442

                                                                       
Query: 374 cggccttggcgaccttgccgaacgcgctggtcacccatgacgcgctggtgaagacatacc 433
           | |||||||||||||||  |||||||| ||| ||||| ||||||| ||||||||| ||||
Sbjct: 443 cagccttggcgaccttgttgaacgcgccggtgacccacgacgcgccggtgaagacgtacc 502

                                                     
Query: 434 tgttcttcatgatggcagacccggcgttgctcaccgtctgct 475
           |||||||||||||||||||||||||  |||||||| ||||||
Sbjct: 503 tgttcttcatgatggcagacccggcactgctcaccttctgct 544
to top
>ref|XM_550488.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1027

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 131/161 (81%)
 Strand = Plus / Minus

                                                                       
Query: 313 gagcccttctgctgctcctcggccgacatcttctccttcgtcatcgtgccgacatctgtg 372
           |||||||| ||||| || || || | |||||||||||| ||||| || || ||||| |||
Sbjct: 864 gagcccttatgctggtcttcagctgccatcttctcctttgtcattgtaccaacatcagtg 805

                                                                       
Query: 373 gcggccttggcgaccttgccgaacgcgctggtcacccatgacgcgctggtgaagacatac 432
           || |||||||| || |||  ||| ||| |||| ||||| || || | |||||||||||||
Sbjct: 804 gcagccttggcaactttgttgaatgcgttggtgacccacgaagccccggtgaagacatac 745

                                                    
Query: 433 ctgttcttcatgatggcagacccggcgttgctcaccgtctg 473
           || ||||||||||| ||||| || ||  |||||||| ||||
Sbjct: 744 ctattcttcatgatagcagatccagcagtgctcaccttctg 704
to top
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6,
              complete sequence
          Length = 30731886

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 131/161 (81%)
 Strand = Plus / Minus

                                                                          
Query: 313    gagcccttctgctgctcctcggccgacatcttctccttcgtcatcgtgccgacatctgtg 372
              |||||||| ||||| || || || | |||||||||||| ||||| || || ||||| |||
Sbjct: 700886 gagcccttatgctggtcttcagctgccatcttctcctttgtcattgtaccaacatcagtg 700827

                                                                          
Query: 373    gcggccttggcgaccttgccgaacgcgctggtcacccatgacgcgctggtgaagacatac 432
              || |||||||| || |||  ||| ||| |||| ||||| || || | |||||||||||||
Sbjct: 700826 gcagccttggcaactttgttgaatgcgttggtgacccacgaagccccggtgaagacatac 700767

                                                       
Query: 433    ctgttcttcatgatggcagacccggcgttgctcaccgtctg 473
              || ||||||||||| ||||| || ||  |||||||| ||||
Sbjct: 700766 ctattcttcatgatagcagatccagcagtgctcaccttctg 700726
to top
>dbj|AP001552.1| Oryza sativa (japonica cultivar-group) geneomic DNA, chromosome 6, PAC
              clone:P0029D06
          Length = 150120

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 131/161 (81%)
 Strand = Plus / Minus

                                                                          
Query: 313    gagcccttctgctgctcctcggccgacatcttctccttcgtcatcgtgccgacatctgtg 372
              |||||||| ||||| || || || | |||||||||||| ||||| || || ||||| |||
Sbjct: 107314 gagcccttatgctggtcttcagctgccatcttctcctttgtcattgtaccaacatcagtg 107255

                                                                          
Query: 373    gcggccttggcgaccttgccgaacgcgctggtcacccatgacgcgctggtgaagacatac 432
              || |||||||| || |||  ||| ||| |||| ||||| || || | |||||||||||||
Sbjct: 107254 gcagccttggcaactttgttgaatgcgttggtgacccacgaagccccggtgaagacatac 107195

                                                       
Query: 433    ctgttcttcatgatggcagacccggcgttgctcaccgtctg 473
              || ||||||||||| ||||| || ||  |||||||| ||||
Sbjct: 107194 ctattcttcatgatagcagatccagcagtgctcaccttctg 107154
to top
>dbj|AK104301.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-011-A08, full
           insert sequence
          Length = 1143

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 131/161 (81%)
 Strand = Plus / Minus

                                                                       
Query: 313 gagcccttctgctgctcctcggccgacatcttctccttcgtcatcgtgccgacatctgtg 372
           |||||||| ||||| || || || | |||||||||||| ||||| || || ||||| |||
Sbjct: 864 gagcccttatgctggtcttcagctgccatcttctcctttgtcattgtaccaacatcagtg 805

                                                                       
Query: 373 gcggccttggcgaccttgccgaacgcgctggtcacccatgacgcgctggtgaagacatac 432
           || |||||||| || |||  ||| ||| |||| ||||| || || | |||||||||||||
Sbjct: 804 gcagccttggcaactttgttgaatgcgttggtgacccacgaagccccggtgaagacatac 745

                                                    
Query: 433 ctgttcttcatgatggcagacccggcgttgctcaccgtctg 473
           || ||||||||||| ||||| || ||  |||||||| ||||
Sbjct: 744 ctattcttcatgatagcagatccagcagtgctcaccttctg 704
to top
>dbj|AK099246.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013116H22, full
           insert sequence
          Length = 1193

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 131/161 (81%)
 Strand = Plus / Minus

                                                                       
Query: 313 gagcccttctgctgctcctcggccgacatcttctccttcgtcatcgtgccgacatctgtg 372
           |||||||| ||||| || || || | |||||||||||| ||||| || || ||||| |||
Sbjct: 867 gagcccttatgctggtcttcagctgccatcttctcctttgtcattgtaccaacatcagtg 808

                                                                       
Query: 373 gcggccttggcgaccttgccgaacgcgctggtcacccatgacgcgctggtgaagacatac 432
           || |||||||| || |||  ||| ||| |||| ||||| || || | |||||||||||||
Sbjct: 807 gcagccttggcaactttgttgaatgcgttggtgacccacgaagccccggtgaagacatac 748

                                                    
Query: 433 ctgttcttcatgatggcagacccggcgttgctcaccgtctg 473
           || ||||||||||| ||||| || ||  |||||||| ||||
Sbjct: 747 ctattcttcatgatagcagatccagcagtgctcaccttctg 707
to top
>dbj|AK074027.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033076C18, full
           insert sequence
          Length = 1026

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 131/161 (81%)
 Strand = Plus / Minus

                                                                       
Query: 313 gagcccttctgctgctcctcggccgacatcttctccttcgtcatcgtgccgacatctgtg 372
           |||||||| ||||| || || || | |||||||||||| ||||| || || ||||| |||
Sbjct: 863 gagcccttatgctggtcttcagctgccatcttctcctttgtcattgtaccaacatcagtg 804

                                                                       
Query: 373 gcggccttggcgaccttgccgaacgcgctggtcacccatgacgcgctggtgaagacatac 432
           || |||||||| || |||  ||| ||| |||| ||||| || || | |||||||||||||
Sbjct: 803 gcagccttggcaactttgttgaatgcgttggtgacccacgaagccccggtgaagacatac 744

                                                    
Query: 433 ctgttcttcatgatggcagacccggcgttgctcaccgtctg 473
           || ||||||||||| ||||| || ||  |||||||| ||||
Sbjct: 743 ctattcttcatgatagcagatccagcagtgctcaccttctg 703
to top
>dbj|AK061483.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-308-H08, full
           insert sequence
          Length = 1147

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 131/161 (81%)
 Strand = Plus / Minus

                                                                       
Query: 313 gagcccttctgctgctcctcggccgacatcttctccttcgtcatcgtgccgacatctgtg 372
           |||||||| ||||| || || || | |||||||||||| ||||| || || ||||| |||
Sbjct: 868 gagcccttatgctggtcttcagctgccatcttctcctttgtcattgtaccaacatcagtg 809

                                                                       
Query: 373 gcggccttggcgaccttgccgaacgcgctggtcacccatgacgcgctggtgaagacatac 432
           || |||||||| || |||  ||| ||| |||| ||||| || || | |||||||||||||
Sbjct: 808 gcagccttggcaactttgttgaatgcgttggtgacccacgaagccccggtgaagacatac 749

                                                    
Query: 433 ctgttcttcatgatggcagacccggcgttgctcaccgtctg 473
           || ||||||||||| ||||| || ||  |||||||| ||||
Sbjct: 748 ctattcttcatgatagcagatccagcagtgctcaccttctg 708
to top
>gb|AC183492.1| Brassica oleracea Contig G, complete sequence
          Length = 236640

 Score = 60.0 bits (30), Expect = 7e-06
 Identities = 42/46 (91%)
 Strand = Plus / Plus

                                                           
Query: 430   tacctgttcttcatgatggcagacccggcgttgctcaccgtctgct 475
             ||||||||||||||||| || || || |||||||||||||||||||
Sbjct: 45161 tacctgttcttcatgatagccgagcccgcgttgctcaccgtctgct 45206
to top
>emb|AL731579.4|OSJN00225 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0006A01,
             complete sequence
          Length = 143157

 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 27/27 (100%)
 Strand = Plus / Plus

                                        
Query: 426   gacatacctgttcttcatgatggcaga 452
             |||||||||||||||||||||||||||
Sbjct: 60392 gacatacctgttcttcatgatggcaga 60418
to top
>emb|AL662952.6|OSJN00151 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0009P12,
              complete sequence
          Length = 179644

 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 27/27 (100%)
 Strand = Plus / Plus

                                         
Query: 426    gacatacctgttcttcatgatggcaga 452
              |||||||||||||||||||||||||||
Sbjct: 157462 gacatacctgttcttcatgatggcaga 157488
to top
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 27/27 (100%)
 Strand = Plus / Plus

                                           
Query: 426      gacatacctgttcttcatgatggcaga 452
                |||||||||||||||||||||||||||
Sbjct: 30020710 gacatacctgttcttcatgatggcaga 30020736
to top
>dbj|AK067019.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013089A03, full
           insert sequence
          Length = 1318

 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 27/27 (100%)
 Strand = Plus / Minus

                                      
Query: 426 gacatacctgttcttcatgatggcaga 452
           |||||||||||||||||||||||||||
Sbjct: 714 gacatacctgttcttcatgatggcaga 688
to top
>gb|BT014424.1| Lycopersicon esculentum clone 133742F, mRNA sequence
          Length = 1011

 Score = 50.1 bits (25), Expect = 0.007
 Identities = 43/49 (87%)
 Strand = Plus / Minus

                                                            
Query: 427 acatacctgttcttcatgatggcagacccggcgttgctcaccgtctgct 475
           ||||| |||||||||||||||||||| || ||  |||| ||||||||||
Sbjct: 648 acatatctgttcttcatgatggcagatccagcagtgctaaccgtctgct 600
to top
>gb|AY105917.1| Zea mays PCO144852 mRNA sequence
          Length = 478

 Score = 44.1 bits (22), Expect = 0.41
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                     
Query: 427 acatacctgttcttcatgatggcaga 452
           |||||||||||||||||||| |||||
Sbjct: 223 acatacctgttcttcatgatagcaga 198
to top
>gb|AE014292.2| Brucella suis 1330 chromosome II, complete sequence
          Length = 1207381

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 372    ggcggccttggcgaccttgcc 392
              |||||||||||||||||||||
Sbjct: 952416 ggcggccttggcgaccttgcc 952436
to top
>gb|AC129330.4| Mus musculus BAC clone RP23-61B8 from chromosome 8, complete sequence
          Length = 218698

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 131    cttctacaaagagaaacaaaa 151
              |||||||||||||||||||||
Sbjct: 181908 cttctacaaagagaaacaaaa 181888
to top
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 204      atatatctaaagttgttttct 224
                |||||||||||||||||||||
Sbjct: 30304582 atatatctaaagttgttttct 30304562
to top
>gb|AC091751.2| Gallus gallus clone WAG-71G10, complete sequence
          Length = 120464

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 337   gacatcttctccttcgtcatcgtgc 361
             |||||||||||||||| ||||||||
Sbjct: 50751 gacatcttctccttcggcatcgtgc 50727
to top
>emb|BX511037.9| Zebrafish DNA sequence from clone DKEY-66N24 in linkage group 1,
             complete sequence
          Length = 148544

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 135   tacaaagagaaacaaaatcct 155
             |||||||||||||||||||||
Sbjct: 75788 tacaaagagaaacaaaatcct 75768
to top
>gb|DP000061.1| Monodelphis domestica target 117 genomic scaffold
          Length = 360990

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 232    caataaataatacaacatggc 252
              |||||||||||||||||||||
Sbjct: 106868 caataaataatacaacatggc 106848
to top
>gb|AC092558.4| Oryza sativa chromosome 3 BAC OSJNBb0036F07 genomic sequence, complete
             sequence
          Length = 130359

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 204   atatatctaaagttgttttct 224
             |||||||||||||||||||||
Sbjct: 96262 atatatctaaagttgttttct 96242
to top
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 204      atatatctaaagttgttttct 224
                |||||||||||||||||||||
Sbjct: 30396004 atatatctaaagttgttttct 30395984
to top
>gb|AE009671.1| Brucella melitensis 16M chromosome II, section 33 of 107 of the
            complete sequence
          Length = 14876

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 372  ggcggccttggcgaccttgcc 392
            |||||||||||||||||||||
Sbjct: 5349 ggcggccttggcgaccttgcc 5329
to top
>ref|NM_204131.1| Gallus gallus LIM domain kinase 1 (LIMK1), mRNA
          Length = 2796

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 337  gacatcttctccttcgtcatcgtgc 361
            |||||||||||||||| ||||||||
Sbjct: 1649 gacatcttctccttcggcatcgtgc 1673
to top
>dbj|BA000019.2| Nostoc sp. PCC 7120 DNA, complete genome
          Length = 6413771

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 41     tccacaacttaaaaaaggaaa 61
              |||||||||||||||||||||
Sbjct: 416821 tccacaacttaaaaaaggaaa 416801
to top
>gb|AE017224.1| Brucella abortus biovar 1 str. 9-941 chromosome II, complete sequence
          Length = 1162204

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 372    ggcggccttggcgaccttgcc 392
              |||||||||||||||||||||
Sbjct: 264777 ggcggccttggcgaccttgcc 264757
to top
>dbj|AK072451.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023120I03, full
            insert sequence
          Length = 2829

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 204  atatatctaaagttgttttct 224
            |||||||||||||||||||||
Sbjct: 2302 atatatctaaagttgttttct 2322
to top
>emb|AM040265.1| Brucella melitensis biovar Abortus chromosome II, complete sequence,
              strain 2308
          Length = 1156948

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 372    ggcggccttggcgaccttgcc 392
              |||||||||||||||||||||
Sbjct: 264846 ggcggccttggcgaccttgcc 264826
to top
>dbj|AP002091.2| Homo sapiens genomic DNA, chromosome 6q25.2, clone: CITD-2058I12,
             complete sequence
          Length = 106763

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 198   tgttctatatatctaaagttgtttt 222
             |||||||||||||| ||||||||||
Sbjct: 31206 tgttctatatatctgaagttgtttt 31230
to top
>dbj|AB073752.1| Gallus gallus limk1 mRNA for LIM kinase 1, complete cds
          Length = 2796

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 337  gacatcttctccttcgtcatcgtgc 361
            |||||||||||||||| ||||||||
Sbjct: 1649 gacatcttctccttcggcatcgtgc 1673
to top
>gb|AC119899.8| Mus musculus chromosome 5, clone RP24-235E5, complete sequence
          Length = 210751

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 89    attttgtaataacatgtaaaaccccaag 116
             ||||||| |||||||||||| |||||||
Sbjct: 73913 attttgtgataacatgtaaagccccaag 73940
to top
>gb|AE007283.1| Sinorhizobium meliloti 1021 plasmid pSymA section 89 of 121 of the
            complete plasmid sequence
          Length = 10765

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 276  tggcgatcagcggatgggcg 295
            ||||||||||||||||||||
Sbjct: 4163 tggcgatcagcggatgggcg 4182
to top
>ref|XM_382043.1| Gibberella zeae PH-1 chromosome 1 hypothetical protein (FG01867.1)
           partial mRNA
          Length = 1851

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 328 tcctcggccgacatcttctccttc 351
           |||||||||||| |||||||||||
Sbjct: 423 tcctcggccgacttcttctccttc 446
to top
>ref|XM_649544.1| Entamoeba histolytica HM-1:IMSS protein kinase (48.t00015)  partial
           mRNA
          Length = 1536

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 230 accaataaataatacaacat 249
           ||||||||||||||||||||
Sbjct: 255 accaataaataatacaacat 236
to top
>gb|AC149080.14| Medicago truncatula clone mth2-75j5, complete sequence
          Length = 96907

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 43    cacaacttaaaaaaggaaaa 62
             ||||||||||||||||||||
Sbjct: 95466 cacaacttaaaaaaggaaaa 95485
to top
>emb|BX572604.1| Rhodopseudomonas palustris CGA009 complete genome; segment 12/16
          Length = 348068

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 389    tgccgaacgcgctggtcacc 408
              ||||||||||||||||||||
Sbjct: 265269 tgccgaacgcgctggtcacc 265250
to top
>emb|CR392367.6| Zebrafish DNA sequence from clone CH211-144A4 in linkage group 24,
              complete sequence
          Length = 167553

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 132    ttctacaaagagaaacaaaa 151
              ||||||||||||||||||||
Sbjct: 158163 ttctacaaagagaaacaaaa 158144
to top
>emb|BX276104.14| Mouse DNA sequence from clone RP24-313E3 on chromosome 4, complete
             sequence
          Length = 152376

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 227   tccaccaataaataatacaa 246
             ||||||||||||||||||||
Sbjct: 41603 tccaccaataaataatacaa 41584
to top
>gb|AC150843.16| Medicago truncatula clone mth2-103p8, complete sequence
          Length = 125707

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 43    cacaacttaaaaaaggaaaa 62
             ||||||||||||||||||||
Sbjct: 31048 cacaacttaaaaaaggaaaa 31067
to top
>dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete genome
          Length = 4967148

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 371     tggcggccttggcgaccttg 390
               ||||||||||||||||||||
Sbjct: 2824116 tggcggccttggcgaccttg 2824097
to top
>gb|DQ337861.1| Uncultured bacterium clone Psedi_nirS-22 NirS (nirS) gene, partial
           cds
          Length = 410

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 388 ttgccgaacgcgctggtcacccat 411
           ||||||| ||||||||||||||||
Sbjct: 290 ttgccgagcgcgctggtcacccat 267
to top
>gb|DQ337837.1| Uncultured bacterium clone P1m_nirS-08 NirS (nirS) gene, partial
           cds
          Length = 410

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 388 ttgccgaacgcgctggtcacccat 411
           ||||||| ||||||||||||||||
Sbjct: 290 ttgccgagcgcgctggtcacccat 267
to top
>gb|AC034268.4| Homo sapiens chromosome 17, clone RP11-312B18, complete sequence
          Length = 198935

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 30    tacagcatccttccacaact 49
             ||||||||||||||||||||
Sbjct: 88100 tacagcatccttccacaact 88119
to top
>gb|AC012173.9| Homo sapiens chromosome 16 clone RP11-152P23, complete sequence
          Length = 74925

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 27    tattacagcatccttccaca 46
             ||||||||||||||||||||
Sbjct: 10540 tattacagcatccttccaca 10559
to top
>emb|AL929009.5| Zebrafish DNA sequence from clone CH211-202A8 in linkage group 24,
              complete sequence
          Length = 208279

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 132    ttctacaaagagaaacaaaa 151
              ||||||||||||||||||||
Sbjct: 169736 ttctacaaagagaaacaaaa 169755
to top
>emb|CR854847.7| Zebrafish DNA sequence from clone DKEY-266L9 in linkage group 11,
             complete sequence
          Length = 48855

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 203   tatatatctaaagttgtttt 222
             ||||||||||||||||||||
Sbjct: 39021 tatatatctaaagttgtttt 39002
to top
>gb|AC004050.1|AC004050 Homo sapiens chromosome 4 clone B207D4 map 4q25, complete sequence
          Length = 127098

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 86    accattttgtaataacatgt 105
             ||||||||||||||||||||
Sbjct: 16849 accattttgtaataacatgt 16830
to top
>gb|AC154192.3| Mus musculus BAC clone RP24-70F14 from chromosome 17, complete sequence
          Length = 234088

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 138   aaagagaaacaaaatcctgg 157
             ||||||||||||||||||||
Sbjct: 77675 aaagagaaacaaaatcctgg 77656
to top
>gb|AF020713.1|AF020713 Bacteriophage SPBc2 complete genome
          Length = 134416

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 4     gaacaacacaacgctaccaa 23
             ||||||||||||||||||||
Sbjct: 10537 gaacaacacaacgctaccaa 10556
to top
>emb|CT025551.9| Mouse DNA sequence from clone RP23-414I10 on chromosome 13, complete
              sequence
          Length = 196737

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 140    agagaaacaaaatcctgggt 159
              ||||||||||||||||||||
Sbjct: 191580 agagaaacaaaatcctgggt 191561
to top
>emb|Z99115.2|BSUB0012 Bacillus subtilis complete genome (section 12 of 21): from 2207806 to
             2409180
          Length = 201375

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 4     gaacaacacaacgctaccaa 23
             ||||||||||||||||||||
Sbjct: 67303 gaacaacacaacgctaccaa 67284


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,259,426
Number of Sequences: 3902068
Number of extensions: 5259426
Number of successful extensions: 114423
Number of sequences better than 10.0: 53
Number of HSP's better than 10.0 without gapping: 53
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 114086
Number of HSP's gapped (non-prelim): 337
length of query: 475
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 453
effective length of database: 17,147,199,772
effective search space: 7767681496716
effective search space used: 7767681496716
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top