Clone Name | rbart15f09 |
---|---|
Clone Library Name | barley_pub |
>emb|CR392033.5| Zebrafish DNA sequence from clone DKEY-122A22 in linkage group 16, complete sequence Length = 170291 Score = 40.1 bits (20), Expect = 0.62 Identities = 20/20 (100%) Strand = Plus / Plus Query: 17 acttgaccataatctcattc 36 |||||||||||||||||||| Sbjct: 145431 acttgaccataatctcattc 145450
>emb|AL035689.26|HS187J11 Human DNA sequence from clone RP1-187J11 on chromosome 6q11.1-22.33 Contains the 3' part of the gene for endoplasmic reticulum associated protein 140 kDa (ERAP140) (similar to nucleolar protein C7B), the gene for a novel protein similar to protein kinase C inhibitors, the gene for MDS024 protein and two putative CpG islands, complete sequence Length = 144364 Score = 38.2 bits (19), Expect = 2.5 Identities = 19/19 (100%) Strand = Plus / Plus Query: 4 accaacaggataaacttga 22 ||||||||||||||||||| Sbjct: 39650 accaacaggataaacttga 39668
>emb|AL390335.3|CNS06C7O Human chromosome 14 DNA sequence BAC R-757K12 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 176505 Score = 38.2 bits (19), Expect = 2.5 Identities = 19/19 (100%) Strand = Plus / Plus Query: 39 attcaaggacaatgtattt 57 ||||||||||||||||||| Sbjct: 24017 attcaaggacaatgtattt 24035
>emb|AL391516.4|CNS06C88 Human chromosome 14 DNA sequence BAC R-629F19 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 167069 Score = 38.2 bits (19), Expect = 2.5 Identities = 19/19 (100%) Strand = Plus / Plus Query: 39 attcaaggacaatgtattt 57 ||||||||||||||||||| Sbjct: 69727 attcaaggacaatgtattt 69745
>emb|AL390801.4|CNS06C7S Human chromosome 14 DNA sequence BAC R-728G21 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 166847 Score = 38.2 bits (19), Expect = 2.5 Identities = 19/19 (100%) Strand = Plus / Minus Query: 39 attcaaggacaatgtattt 57 ||||||||||||||||||| Sbjct: 81492 attcaaggacaatgtattt 81474
>gb|L43967.2| Mycoplasma genitalium G37, complete genome Length = 580076 Score = 38.2 bits (19), Expect = 2.5 Identities = 19/19 (100%) Strand = Plus / Plus Query: 4 accaacaggataaacttga 22 ||||||||||||||||||| Sbjct: 175971 accaacaggataaacttga 175989
>ref|NM_117616.1| Arabidopsis thaliana UDP-glycosyltransferase/ transferase, transferring glycosyl groups AT4G15280 mRNA, complete cds Length = 1437 Score = 36.2 bits (18), Expect = 9.7 Identities = 18/18 (100%) Strand = Plus / Minus Query: 5 ccaacaggataaacttga 22 |||||||||||||||||| Sbjct: 728 ccaacaggataaacttga 711
>gb|AC162520.7| Mus musculus chromosome 5, clone RP24-118C7, complete sequence Length = 187196 Score = 36.2 bits (18), Expect = 9.7 Identities = 18/18 (100%) Strand = Plus / Minus Query: 39 attcaaggacaatgtatt 56 |||||||||||||||||| Sbjct: 160976 attcaaggacaatgtatt 160959
>gb|AC149676.2| Bos taurus BAC CH240-43C16 (Children's Hospital Oakland Research Institute Bovine BAC Library (male)) complete sequence Length = 168416 Score = 36.2 bits (18), Expect = 9.7 Identities = 18/18 (100%) Strand = Plus / Minus Query: 27 aatctcattcggattcaa 44 |||||||||||||||||| Sbjct: 153382 aatctcattcggattcaa 153365
>gb|BT013851.1| Lycopersicon esculentum clone 132811R, mRNA sequence Length = 2171 Score = 36.2 bits (18), Expect = 9.7 Identities = 18/18 (100%) Strand = Plus / Minus Query: 9 caggataaacttgaccat 26 |||||||||||||||||| Sbjct: 1158 caggataaacttgaccat 1141
>gb|AC161257.2| Mus musculus BAC clone RP24-91A16 from chromosome 9, complete sequence Length = 245088 Score = 36.2 bits (18), Expect = 9.7 Identities = 21/22 (95%) Strand = Plus / Minus Query: 5 ccaacaggataaacttgaccat 26 |||||||||||| ||||||||| Sbjct: 238049 ccaacaggataagcttgaccat 238028
>emb|Z50071.1|CET07D4 Caenorhabditis elegans Cosmid T07D4, complete sequence Length = 26511 Score = 36.2 bits (18), Expect = 9.7 Identities = 18/18 (100%) Strand = Plus / Plus Query: 41 tcaaggacaatgtattta 58 |||||||||||||||||| Sbjct: 24338 tcaaggacaatgtattta 24355
>gb|AC144935.3| Mus musculus BAC clone RP24-340M21 from chromosome 9, complete sequence Length = 109624 Score = 36.2 bits (18), Expect = 9.7 Identities = 21/22 (95%) Strand = Plus / Plus Query: 5 ccaacaggataaacttgaccat 26 |||||||||||| ||||||||| Sbjct: 77169 ccaacaggataagcttgaccat 77190
>gb|AC106820.4| Homo sapiens chromosome 16 clone RP11-715J22, complete sequence Length = 176552 Score = 36.2 bits (18), Expect = 9.7 Identities = 21/22 (95%) Strand = Plus / Plus Query: 44 aggacaatgtatttaaggaaaa 65 |||||||||||||| ||||||| Sbjct: 152049 aggacaatgtatttcaggaaaa 152070
>emb|Z54306.1|CEB0457 Caenorhabditis elegans Cosmid B0457, complete sequence Length = 40634 Score = 36.2 bits (18), Expect = 9.7 Identities = 18/18 (100%) Strand = Plus / Plus Query: 41 tcaaggacaatgtattta 58 |||||||||||||||||| Sbjct: 1915 tcaaggacaatgtattta 1932
>gb|AC122931.4| Mus musculus BAC clone RP23-15C15 from 9, complete sequence Length = 192274 Score = 36.2 bits (18), Expect = 9.7 Identities = 18/18 (100%) Strand = Plus / Plus Query: 45 ggacaatgtatttaagga 62 |||||||||||||||||| Sbjct: 45972 ggacaatgtatttaagga 45989
>gb|AC144389.22| Medicago truncatula clone mth2-25e14, complete sequence Length = 127170 Score = 36.2 bits (18), Expect = 9.7 Identities = 21/22 (95%) Strand = Plus / Minus Query: 13 ataaacttgaccataatctcat 34 |||||||||| ||||||||||| Sbjct: 123855 ataaacttgatcataatctcat 123834
>emb|AL589943.26| Human DNA sequence from clone RP11-44D23 on chromosome 10, complete sequence Length = 139325 Score = 36.2 bits (18), Expect = 9.7 Identities = 18/18 (100%) Strand = Plus / Minus Query: 37 ggattcaaggacaatgta 54 |||||||||||||||||| Sbjct: 65159 ggattcaaggacaatgta 65142
>emb|AL513170.16| Human DNA sequence from clone RP11-285B4 on chromosome 1, complete sequence Length = 96748 Score = 36.2 bits (18), Expect = 9.7 Identities = 18/18 (100%) Strand = Plus / Minus Query: 1 aacaccaacaggataaac 18 |||||||||||||||||| Sbjct: 22513 aacaccaacaggataaac 22496
>emb|AL390955.20| Human DNA sequence from clone RP5-933K21 on chromosome 6q25.2-26 Contains the 5' end of the C6orf35 gene for chromosome 6 open reading frame 35 (BM033), a steroid dehydrogenase homolog pseudogene and a CpG island, complete sequence Length = 56813 Score = 36.2 bits (18), Expect = 9.7 Identities = 18/18 (100%) Strand = Plus / Minus Query: 8 acaggataaacttgacca 25 |||||||||||||||||| Sbjct: 55476 acaggataaacttgacca 55459
>gb|AF491780.1| Homo sapiens neuregulin 1 (NRG1) gene, partial cds, alternatively spliced Length = 1285452 Score = 36.2 bits (18), Expect = 9.7 Identities = 21/22 (95%) Strand = Plus / Minus Query: 40 ttcaaggacaatgtatttaagg 61 ||||||||||| |||||||||| Sbjct: 605245 ttcaaggacaaggtatttaagg 605224
>gb|AC135241.3| Mus musculus chromosome UNK clone RP24-340G21, complete sequence Length = 109610 Score = 36.2 bits (18), Expect = 9.7 Identities = 21/22 (95%) Strand = Plus / Plus Query: 5 ccaacaggataaacttgaccat 26 |||||||||||| ||||||||| Sbjct: 77155 ccaacaggataagcttgaccat 77176
>gb|AC153011.4| Mus musculus BAC clone RP23-316O20 from chromosome 9, complete sequence Length = 190332 Score = 36.2 bits (18), Expect = 9.7 Identities = 18/18 (100%) Strand = Plus / Plus Query: 45 ggacaatgtatttaagga 62 |||||||||||||||||| Sbjct: 133040 ggacaatgtatttaagga 133057
>gb|AC022833.5| Homo sapiens chromosome , clone RP11-147C21, complete sequence Length = 177019 Score = 36.2 bits (18), Expect = 9.7 Identities = 21/22 (95%) Strand = Plus / Plus Query: 40 ttcaaggacaatgtatttaagg 61 ||||||||||| |||||||||| Sbjct: 15945 ttcaaggacaaggtatttaagg 15966
>gb|AC021909.7| Homo sapiens, clone RP11-22F19, complete sequence Length = 178621 Score = 36.2 bits (18), Expect = 9.7 Identities = 21/22 (95%) Strand = Plus / Minus Query: 40 ttcaaggacaatgtatttaagg 61 ||||||||||| |||||||||| Sbjct: 69420 ttcaaggacaaggtatttaagg 69399
>gb|AC150443.2| Medicago truncatula chromosome 7 BAC clone mth2-71o19, complete sequence Length = 132097 Score = 36.2 bits (18), Expect = 9.7 Identities = 21/22 (95%) Strand = Plus / Minus Query: 13 ataaacttgaccataatctcat 34 |||||||||| ||||||||||| Sbjct: 18002 ataaacttgatcataatctcat 17981
>dbj|AB169576.1| Macaca fascicularis brain cDNA, clone: QnpA-11752, similar to human hydroxysteroid (17-beta) dehydrogenase 12 (HSD17B12),mRNA, RefSeq: NM_016142.1 Length = 2202 Score = 36.2 bits (18), Expect = 9.7 Identities = 18/18 (100%) Strand = Plus / Plus Query: 8 acaggataaacttgacca 25 |||||||||||||||||| Sbjct: 336 acaggataaacttgacca 353
>gb|AC121769.4| Mus musculus BAC clone RP23-340N4 from chromosome 5, complete sequence Length = 186413 Score = 36.2 bits (18), Expect = 9.7 Identities = 18/18 (100%) Strand = Plus / Plus Query: 42 caaggacaatgtatttaa 59 |||||||||||||||||| Sbjct: 133934 caaggacaatgtatttaa 133951
>gb|AC154701.2| Mus musculus BAC clone RP24-344N20 from chromosome 14, complete sequence Length = 169056 Score = 36.2 bits (18), Expect = 9.7 Identities = 18/18 (100%) Strand = Plus / Minus Query: 42 caaggacaatgtatttaa 59 |||||||||||||||||| Sbjct: 99585 caaggacaatgtatttaa 99568
>tpg|BK001437.1| TPA: TPA_exp: Homo sapiens SULT6B1 (SULT6B1) gene, complete cds; alternatively spliced Length = 34001 Score = 36.2 bits (18), Expect = 9.7 Identities = 21/22 (95%) Strand = Plus / Minus Query: 1 aacaccaacaggataaacttga 22 ||||||||||||||||| |||| Sbjct: 19093 aacaccaacaggataaaattga 19072
>tpg|BK000383.1| TPA: TPA_exp: Homo sapiens neuregulin 1 isoform (NRG1) gene, alternatively spliced, complete cds Length = 1421559 Score = 36.2 bits (18), Expect = 9.7 Identities = 21/22 (95%) Strand = Plus / Minus Query: 40 ttcaaggacaatgtatttaagg 61 ||||||||||| |||||||||| Sbjct: 605245 ttcaaggacaaggtatttaagg 605224
>gb|AC068937.4|AC068937 Homo sapiens chromosome 8, clone RP11-490D16, complete sequence Length = 168302 Score = 36.2 bits (18), Expect = 9.7 Identities = 18/18 (100%) Strand = Plus / Plus Query: 48 caatgtatttaaggaaaa 65 |||||||||||||||||| Sbjct: 136237 caatgtatttaaggaaaa 136254
>gb|AC007899.3| Homo sapiens BAC clone RP11-531C11 from 2, complete sequence Length = 118195 Score = 36.2 bits (18), Expect = 9.7 Identities = 21/22 (95%) Strand = Plus / Minus Query: 1 aacaccaacaggataaacttga 22 ||||||||||||||||| |||| Sbjct: 10089 aacaccaacaggataaaattga 10068
>gb|AC108782.9| Mus musculus chromosome 8, clone RP23-350C11, complete sequence Length = 221428 Score = 36.2 bits (18), Expect = 9.7 Identities = 18/18 (100%) Strand = Plus / Minus Query: 10 aggataaacttgaccata 27 |||||||||||||||||| Sbjct: 134275 aggataaacttgaccata 134258
>emb|Z97338.2|ATFCA3 Arabidopsis thaliana DNA chromosome 4, ESSA I FCA contig fragment No. 3 Length = 200252 Score = 36.2 bits (18), Expect = 9.7 Identities = 18/18 (100%) Strand = Plus / Minus Query: 5 ccaacaggataaacttga 22 |||||||||||||||||| Sbjct: 84552 ccaacaggataaacttga 84535
>emb|AL161541.2|ATCHRIV41 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 41 Length = 197419 Score = 36.2 bits (18), Expect = 9.7 Identities = 18/18 (100%) Strand = Plus / Minus Query: 5 ccaacaggataaacttga 22 |||||||||||||||||| Sbjct: 38029 ccaacaggataaacttga 38012
>emb|AL928589.11| Mouse DNA sequence from clone RP23-350C1 on chromosome 2, complete sequence Length = 209053 Score = 36.2 bits (18), Expect = 9.7 Identities = 21/22 (95%) Strand = Plus / Plus Query: 14 taaacttgaccataatctcatt 35 |||| ||||||||||||||||| Sbjct: 37386 taaagttgaccataatctcatt 37407
>emb|AL929473.7| Mouse DNA sequence from clone RP23-143P21 on chromosome 4, complete sequence Length = 59619 Score = 36.2 bits (18), Expect = 9.7 Identities = 18/18 (100%) Strand = Plus / Minus Query: 40 ttcaaggacaatgtattt 57 |||||||||||||||||| Sbjct: 40485 ttcaaggacaatgtattt 40468 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 543,683 Number of Sequences: 3902068 Number of extensions: 543683 Number of successful extensions: 33394 Number of sequences better than 10.0: 38 Number of HSP's better than 10.0 without gapping: 38 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 33338 Number of HSP's gapped (non-prelim): 56 length of query: 65 length of database: 17,233,045,268 effective HSP length: 21 effective length of query: 44 effective length of database: 17,151,101,840 effective search space: 754648480960 effective search space used: 754648480960 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 18 (36.2 bits)