ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart15f09
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1emb|CR392033.5| Zebrafish DNA sequence from clone DKEY-122A22 in... 40 0.62
2emb|AL035689.26|HS187J11 Human DNA sequence from clone RP1-187J1... 38 2.5
3emb|AL390335.3|CNS06C7O Human chromosome 14 DNA sequence BAC R-7... 38 2.5
4emb|AL391516.4|CNS06C88 Human chromosome 14 DNA sequence BAC R-6... 38 2.5
5emb|AL390801.4|CNS06C7S Human chromosome 14 DNA sequence BAC R-7... 38 2.5
6gb|L43967.2| Mycoplasma genitalium G37, complete genome 38 2.5
7ref|NM_117616.1| Arabidopsis thaliana UDP-glycosyltransferase/ t... 36 9.7
8gb|AC162520.7| Mus musculus chromosome 5, clone RP24-118C7, comp... 36 9.7
9gb|AC149676.2| Bos taurus BAC CH240-43C16 (Children's Hospital ... 36 9.7
10gb|BT013851.1| Lycopersicon esculentum clone 132811R, mRNA sequence 36 9.7
11gb|AC161257.2| Mus musculus BAC clone RP24-91A16 from chromosome... 36 9.7
12emb|Z50071.1|CET07D4 Caenorhabditis elegans Cosmid T07D4, comple... 36 9.7
13gb|AC144935.3| Mus musculus BAC clone RP24-340M21 from chromosom... 36 9.7
14gb|AC106820.4| Homo sapiens chromosome 16 clone RP11-715J22, com... 36 9.7
15emb|Z54306.1|CEB0457 Caenorhabditis elegans Cosmid B0457, comple... 36 9.7
16gb|AC122931.4| Mus musculus BAC clone RP23-15C15 from 9, complet... 36 9.7
17gb|AC144389.22| Medicago truncatula clone mth2-25e14, complete s... 36 9.7
18emb|AL589943.26| Human DNA sequence from clone RP11-44D23 on chr... 36 9.7
19emb|AL513170.16| Human DNA sequence from clone RP11-285B4 on chr... 36 9.7
20emb|AL390955.20| Human DNA sequence from clone RP5-933K21 on chr... 36 9.7
21gb|AF491780.1| Homo sapiens neuregulin 1 (NRG1) gene, partial cd... 36 9.7
22gb|AC135241.3| Mus musculus chromosome UNK clone RP24-340G21, co... 36 9.7
23gb|AC153011.4| Mus musculus BAC clone RP23-316O20 from chromosom... 36 9.7
24gb|AC022833.5| Homo sapiens chromosome , clone RP11-147C21, comp... 36 9.7
25gb|AC021909.7| Homo sapiens, clone RP11-22F19, complete sequence 36 9.7
26gb|AC150443.2| Medicago truncatula chromosome 7 BAC clone mth2-7... 36 9.7
27dbj|AB169576.1| Macaca fascicularis brain cDNA, clone: QnpA-1175... 36 9.7
28gb|AC121769.4| Mus musculus BAC clone RP23-340N4 from chromosome... 36 9.7
29gb|AC154701.2| Mus musculus BAC clone RP24-344N20 from chromosom... 36 9.7
30tpg|BK001437.1| TPA: TPA_exp: Homo sapiens SULT6B1 (SULT6B1) gen... 36 9.7
31tpg|BK000383.1| TPA: TPA_exp: Homo sapiens neuregulin 1 isoform ... 36 9.7
32gb|AC068937.4|AC068937 Homo sapiens chromosome 8, clone RP11-490... 36 9.7
33gb|AC007899.3| Homo sapiens BAC clone RP11-531C11 from 2, comple... 36 9.7
34gb|AC108782.9| Mus musculus chromosome 8, clone RP23-350C11, com... 36 9.7
35emb|Z97338.2|ATFCA3 Arabidopsis thaliana DNA chromosome 4, ESSA ... 36 9.7
36emb|AL161541.2|ATCHRIV41 Arabidopsis thaliana DNA chromosome 4, ... 36 9.7
37emb|AL928589.11| Mouse DNA sequence from clone RP23-350C1 on chr... 36 9.7
38emb|AL929473.7| Mouse DNA sequence from clone RP23-143P21 on chr... 36 9.7

>emb|CR392033.5| Zebrafish DNA sequence from clone DKEY-122A22 in linkage group 16,
              complete sequence
          Length = 170291

 Score = 40.1 bits (20), Expect = 0.62
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 17     acttgaccataatctcattc 36
              ||||||||||||||||||||
Sbjct: 145431 acttgaccataatctcattc 145450



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>emb|AL035689.26|HS187J11 Human DNA sequence from clone RP1-187J11 on chromosome 6q11.1-22.33
             Contains the 3' part of the gene for endoplasmic reticulum
             associated protein 140 kDa (ERAP140) (similar to nucleolar
             protein C7B), the gene for a novel protein similar to
             protein kinase C inhibitors, the gene for MDS024 protein
             and two putative CpG islands, complete sequence
          Length = 144364

 Score = 38.2 bits (19), Expect = 2.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 4     accaacaggataaacttga 22
             |||||||||||||||||||
Sbjct: 39650 accaacaggataaacttga 39668



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>emb|AL390335.3|CNS06C7O Human chromosome 14 DNA sequence BAC R-757K12 of library RPCI-11 from
             chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 176505

 Score = 38.2 bits (19), Expect = 2.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 39    attcaaggacaatgtattt 57
             |||||||||||||||||||
Sbjct: 24017 attcaaggacaatgtattt 24035



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>emb|AL391516.4|CNS06C88 Human chromosome 14 DNA sequence BAC R-629F19 of library RPCI-11 from
             chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 167069

 Score = 38.2 bits (19), Expect = 2.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 39    attcaaggacaatgtattt 57
             |||||||||||||||||||
Sbjct: 69727 attcaaggacaatgtattt 69745



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>emb|AL390801.4|CNS06C7S Human chromosome 14 DNA sequence BAC R-728G21 of library RPCI-11 from
             chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 166847

 Score = 38.2 bits (19), Expect = 2.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 39    attcaaggacaatgtattt 57
             |||||||||||||||||||
Sbjct: 81492 attcaaggacaatgtattt 81474



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>gb|L43967.2| Mycoplasma genitalium G37, complete genome
          Length = 580076

 Score = 38.2 bits (19), Expect = 2.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 4      accaacaggataaacttga 22
              |||||||||||||||||||
Sbjct: 175971 accaacaggataaacttga 175989



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>ref|NM_117616.1| Arabidopsis thaliana UDP-glycosyltransferase/ transferase,
           transferring glycosyl groups AT4G15280 mRNA, complete
           cds
          Length = 1437

 Score = 36.2 bits (18), Expect = 9.7
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                             
Query: 5   ccaacaggataaacttga 22
           ||||||||||||||||||
Sbjct: 728 ccaacaggataaacttga 711



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>gb|AC162520.7| Mus musculus chromosome 5, clone RP24-118C7, complete sequence
          Length = 187196

 Score = 36.2 bits (18), Expect = 9.7
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                                
Query: 39     attcaaggacaatgtatt 56
              ||||||||||||||||||
Sbjct: 160976 attcaaggacaatgtatt 160959



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>gb|AC149676.2| Bos taurus  BAC CH240-43C16 (Children's Hospital Oakland Research
              Institute Bovine BAC Library (male)) complete sequence
          Length = 168416

 Score = 36.2 bits (18), Expect = 9.7
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                                
Query: 27     aatctcattcggattcaa 44
              ||||||||||||||||||
Sbjct: 153382 aatctcattcggattcaa 153365



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>gb|BT013851.1| Lycopersicon esculentum clone 132811R, mRNA sequence
          Length = 2171

 Score = 36.2 bits (18), Expect = 9.7
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                              
Query: 9    caggataaacttgaccat 26
            ||||||||||||||||||
Sbjct: 1158 caggataaacttgaccat 1141



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>gb|AC161257.2| Mus musculus BAC clone RP24-91A16 from chromosome 9, complete sequence
          Length = 245088

 Score = 36.2 bits (18), Expect = 9.7
 Identities = 21/22 (95%)
 Strand = Plus / Minus

                                    
Query: 5      ccaacaggataaacttgaccat 26
              |||||||||||| |||||||||
Sbjct: 238049 ccaacaggataagcttgaccat 238028



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>emb|Z50071.1|CET07D4 Caenorhabditis elegans Cosmid T07D4, complete sequence
          Length = 26511

 Score = 36.2 bits (18), Expect = 9.7
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                               
Query: 41    tcaaggacaatgtattta 58
             ||||||||||||||||||
Sbjct: 24338 tcaaggacaatgtattta 24355



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>gb|AC144935.3| Mus musculus BAC clone RP24-340M21 from chromosome 9, complete sequence
          Length = 109624

 Score = 36.2 bits (18), Expect = 9.7
 Identities = 21/22 (95%)
 Strand = Plus / Plus

                                   
Query: 5     ccaacaggataaacttgaccat 26
             |||||||||||| |||||||||
Sbjct: 77169 ccaacaggataagcttgaccat 77190



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>gb|AC106820.4| Homo sapiens chromosome 16 clone RP11-715J22, complete sequence
          Length = 176552

 Score = 36.2 bits (18), Expect = 9.7
 Identities = 21/22 (95%)
 Strand = Plus / Plus

                                    
Query: 44     aggacaatgtatttaaggaaaa 65
              |||||||||||||| |||||||
Sbjct: 152049 aggacaatgtatttcaggaaaa 152070



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>emb|Z54306.1|CEB0457 Caenorhabditis elegans Cosmid B0457, complete sequence
          Length = 40634

 Score = 36.2 bits (18), Expect = 9.7
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                              
Query: 41   tcaaggacaatgtattta 58
            ||||||||||||||||||
Sbjct: 1915 tcaaggacaatgtattta 1932



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>gb|AC122931.4| Mus musculus BAC clone RP23-15C15 from 9, complete sequence
          Length = 192274

 Score = 36.2 bits (18), Expect = 9.7
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                               
Query: 45    ggacaatgtatttaagga 62
             ||||||||||||||||||
Sbjct: 45972 ggacaatgtatttaagga 45989



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>gb|AC144389.22| Medicago truncatula clone mth2-25e14, complete sequence
          Length = 127170

 Score = 36.2 bits (18), Expect = 9.7
 Identities = 21/22 (95%)
 Strand = Plus / Minus

                                    
Query: 13     ataaacttgaccataatctcat 34
              |||||||||| |||||||||||
Sbjct: 123855 ataaacttgatcataatctcat 123834



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>emb|AL589943.26| Human DNA sequence from clone RP11-44D23 on chromosome 10, complete
             sequence
          Length = 139325

 Score = 36.2 bits (18), Expect = 9.7
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                               
Query: 37    ggattcaaggacaatgta 54
             ||||||||||||||||||
Sbjct: 65159 ggattcaaggacaatgta 65142



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>emb|AL513170.16| Human DNA sequence from clone RP11-285B4 on chromosome 1, complete
             sequence
          Length = 96748

 Score = 36.2 bits (18), Expect = 9.7
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                               
Query: 1     aacaccaacaggataaac 18
             ||||||||||||||||||
Sbjct: 22513 aacaccaacaggataaac 22496



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>emb|AL390955.20| Human DNA sequence from clone RP5-933K21 on chromosome 6q25.2-26
             Contains the 5' end of the C6orf35 gene for chromosome 6
             open reading frame 35 (BM033), a steroid dehydrogenase
             homolog pseudogene and a CpG island, complete sequence
          Length = 56813

 Score = 36.2 bits (18), Expect = 9.7
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                               
Query: 8     acaggataaacttgacca 25
             ||||||||||||||||||
Sbjct: 55476 acaggataaacttgacca 55459



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>gb|AF491780.1| Homo sapiens neuregulin 1 (NRG1) gene, partial cds, alternatively spliced
          Length = 1285452

 Score = 36.2 bits (18), Expect = 9.7
 Identities = 21/22 (95%)
 Strand = Plus / Minus

                                    
Query: 40     ttcaaggacaatgtatttaagg 61
              ||||||||||| ||||||||||
Sbjct: 605245 ttcaaggacaaggtatttaagg 605224



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>gb|AC135241.3| Mus musculus chromosome UNK clone RP24-340G21, complete sequence
          Length = 109610

 Score = 36.2 bits (18), Expect = 9.7
 Identities = 21/22 (95%)
 Strand = Plus / Plus

                                   
Query: 5     ccaacaggataaacttgaccat 26
             |||||||||||| |||||||||
Sbjct: 77155 ccaacaggataagcttgaccat 77176



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>gb|AC153011.4| Mus musculus BAC clone RP23-316O20 from chromosome 9, complete sequence
          Length = 190332

 Score = 36.2 bits (18), Expect = 9.7
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                                
Query: 45     ggacaatgtatttaagga 62
              ||||||||||||||||||
Sbjct: 133040 ggacaatgtatttaagga 133057



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>gb|AC022833.5| Homo sapiens chromosome , clone RP11-147C21, complete sequence
          Length = 177019

 Score = 36.2 bits (18), Expect = 9.7
 Identities = 21/22 (95%)
 Strand = Plus / Plus

                                   
Query: 40    ttcaaggacaatgtatttaagg 61
             ||||||||||| ||||||||||
Sbjct: 15945 ttcaaggacaaggtatttaagg 15966



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>gb|AC021909.7| Homo sapiens, clone RP11-22F19, complete sequence
          Length = 178621

 Score = 36.2 bits (18), Expect = 9.7
 Identities = 21/22 (95%)
 Strand = Plus / Minus

                                   
Query: 40    ttcaaggacaatgtatttaagg 61
             ||||||||||| ||||||||||
Sbjct: 69420 ttcaaggacaaggtatttaagg 69399



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>gb|AC150443.2| Medicago truncatula chromosome 7 BAC clone mth2-71o19, complete
             sequence
          Length = 132097

 Score = 36.2 bits (18), Expect = 9.7
 Identities = 21/22 (95%)
 Strand = Plus / Minus

                                   
Query: 13    ataaacttgaccataatctcat 34
             |||||||||| |||||||||||
Sbjct: 18002 ataaacttgatcataatctcat 17981



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>dbj|AB169576.1| Macaca fascicularis brain cDNA, clone: QnpA-11752, similar to human
           hydroxysteroid (17-beta) dehydrogenase 12
           (HSD17B12),mRNA, RefSeq: NM_016142.1
          Length = 2202

 Score = 36.2 bits (18), Expect = 9.7
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                             
Query: 8   acaggataaacttgacca 25
           ||||||||||||||||||
Sbjct: 336 acaggataaacttgacca 353



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>gb|AC121769.4| Mus musculus BAC clone RP23-340N4 from chromosome 5, complete sequence
          Length = 186413

 Score = 36.2 bits (18), Expect = 9.7
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                                
Query: 42     caaggacaatgtatttaa 59
              ||||||||||||||||||
Sbjct: 133934 caaggacaatgtatttaa 133951



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>gb|AC154701.2| Mus musculus BAC clone RP24-344N20 from chromosome 14, complete
             sequence
          Length = 169056

 Score = 36.2 bits (18), Expect = 9.7
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                               
Query: 42    caaggacaatgtatttaa 59
             ||||||||||||||||||
Sbjct: 99585 caaggacaatgtatttaa 99568



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>tpg|BK001437.1| TPA: TPA_exp: Homo sapiens SULT6B1 (SULT6B1) gene, complete cds;
             alternatively spliced
          Length = 34001

 Score = 36.2 bits (18), Expect = 9.7
 Identities = 21/22 (95%)
 Strand = Plus / Minus

                                   
Query: 1     aacaccaacaggataaacttga 22
             ||||||||||||||||| ||||
Sbjct: 19093 aacaccaacaggataaaattga 19072



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>tpg|BK000383.1| TPA: TPA_exp: Homo sapiens neuregulin 1 isoform (NRG1) gene,
              alternatively spliced, complete cds
          Length = 1421559

 Score = 36.2 bits (18), Expect = 9.7
 Identities = 21/22 (95%)
 Strand = Plus / Minus

                                    
Query: 40     ttcaaggacaatgtatttaagg 61
              ||||||||||| ||||||||||
Sbjct: 605245 ttcaaggacaaggtatttaagg 605224



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>gb|AC068937.4|AC068937 Homo sapiens chromosome 8, clone RP11-490D16, complete sequence
          Length = 168302

 Score = 36.2 bits (18), Expect = 9.7
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                                
Query: 48     caatgtatttaaggaaaa 65
              ||||||||||||||||||
Sbjct: 136237 caatgtatttaaggaaaa 136254



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>gb|AC007899.3| Homo sapiens BAC clone RP11-531C11 from 2, complete sequence
          Length = 118195

 Score = 36.2 bits (18), Expect = 9.7
 Identities = 21/22 (95%)
 Strand = Plus / Minus

                                   
Query: 1     aacaccaacaggataaacttga 22
             ||||||||||||||||| ||||
Sbjct: 10089 aacaccaacaggataaaattga 10068



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>gb|AC108782.9| Mus musculus chromosome 8, clone RP23-350C11, complete sequence
          Length = 221428

 Score = 36.2 bits (18), Expect = 9.7
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                                
Query: 10     aggataaacttgaccata 27
              ||||||||||||||||||
Sbjct: 134275 aggataaacttgaccata 134258



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>emb|Z97338.2|ATFCA3 Arabidopsis thaliana DNA chromosome 4, ESSA I FCA contig fragment No. 3
          Length = 200252

 Score = 36.2 bits (18), Expect = 9.7
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                               
Query: 5     ccaacaggataaacttga 22
             ||||||||||||||||||
Sbjct: 84552 ccaacaggataaacttga 84535



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>emb|AL161541.2|ATCHRIV41 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 41
          Length = 197419

 Score = 36.2 bits (18), Expect = 9.7
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                               
Query: 5     ccaacaggataaacttga 22
             ||||||||||||||||||
Sbjct: 38029 ccaacaggataaacttga 38012



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>emb|AL928589.11| Mouse DNA sequence from clone RP23-350C1 on chromosome 2, complete
             sequence
          Length = 209053

 Score = 36.2 bits (18), Expect = 9.7
 Identities = 21/22 (95%)
 Strand = Plus / Plus

                                   
Query: 14    taaacttgaccataatctcatt 35
             |||| |||||||||||||||||
Sbjct: 37386 taaagttgaccataatctcatt 37407



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>emb|AL929473.7| Mouse DNA sequence from clone RP23-143P21 on chromosome 4, complete
             sequence
          Length = 59619

 Score = 36.2 bits (18), Expect = 9.7
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                               
Query: 40    ttcaaggacaatgtattt 57
             ||||||||||||||||||
Sbjct: 40485 ttcaaggacaatgtattt 40468


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 543,683
Number of Sequences: 3902068
Number of extensions: 543683
Number of successful extensions: 33394
Number of sequences better than 10.0: 38
Number of HSP's better than 10.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 33338
Number of HSP's gapped (non-prelim): 56
length of query: 65
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 44
effective length of database: 17,151,101,840
effective search space: 754648480960
effective search space used: 754648480960
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 18 (36.2 bits)
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