ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart15f04
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AK067501.1| Oryza sativa (japonica cultivar-group) cDNA clon... 109 6e-21
2emb|AL731607.3|OSJN00250 Oryza sativa genomic DNA, chromosome 4,... 98 2e-17
3dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 98 2e-17
4emb|AL732332.3| Oryza sativa genomic DNA, chromosome 4, BAC clon... 98 2e-17
5emb|AL606454.3|OSJN00009 Oryza sativa genomic DNA, chromosome 4,... 98 2e-17
6gb|AC109170.10| Mus musculus chromosome 8, clone RP23-87B3, comp... 44 0.28
7gb|AC123794.4| Mus musculus BAC clone RP24-315P14 from chromosom... 44 0.28
8gb|AY104098.1| Zea mays PCO119647 mRNA sequence 44 0.28
9emb|BX255949.3| Zebrafish DNA sequence from clone DKEY-76F5 in l... 44 0.28
10emb|AL935181.5| Zebrafish DNA sequence from clone CH211-162K9, c... 42 1.1
11gb|AC114644.10| Mus musculus chromosome 1, clone RP24-128L10, co... 40 4.4
12ref|XM_516202.1| PREDICTED: Pan troglodytes hypothetical protein... 40 4.4
13ref|XM_873163.1| PREDICTED: Bos taurus similar to retinoblastoma... 40 4.4
14ref|XM_873064.1| PREDICTED: Bos taurus similar to retinoblastoma... 40 4.4
15ref|XM_610013.2| PREDICTED: Bos taurus similar to retinoblastoma... 40 4.4
16ref|XM_864346.1| PREDICTED: Bos taurus similar to retinoblastoma... 40 4.4
17gb|AC112794.4| Mus musculus chromosome 12 clone RP24-121O24, com... 40 4.4
18ref|XM_988474.1| PREDICTED: Mus musculus AT rich interactive dom... 40 4.4
19ref|XM_898193.2| PREDICTED: Mus musculus AT rich interactive dom... 40 4.4
20ref|XM_354675.4| PREDICTED: Mus musculus AT rich interactive dom... 40 4.4
21ref|XM_898206.2| PREDICTED: Mus musculus AT rich interactive dom... 40 4.4
22ref|XM_923512.2| PREDICTED: Mus musculus AT rich interactive dom... 40 4.4
23ref|XM_914992.2| PREDICTED: Mus musculus AT rich interactive dom... 40 4.4
24ref|XM_923528.2| PREDICTED: Mus musculus AT rich interactive dom... 40 4.4
25gb|BC037715.1| Mus musculus AT rich interactive domain 4A (Rbp1 ... 40 4.4
26gb|AC124728.5| Mus musculus BAC clone RP23-470C22 from chromosom... 40 4.4
27gb|AC122191.4| Mus musculus BAC clone RP23-42J4 from 6, complete... 40 4.4
28ref|XM_537461.2| PREDICTED: Canis familiaris similar to retinobl... 40 4.4
29ref|XM_859819.1| PREDICTED: Canis familiaris similar to retinobl... 40 4.4
30ref|XM_662867.1| Cryptosporidium hominis TU502 dolichyl phosphat... 40 4.4
31ref|NM_023001.1| Homo sapiens AT rich interactive domain 4A (RBP... 40 4.4
32ref|NM_002892.2| Homo sapiens AT rich interactive domain 4A (RBP... 40 4.4
33ref|NM_023000.1| Homo sapiens AT rich interactive domain 4A (RBP... 40 4.4
34emb|CR392362.23| Zebrafish DNA sequence from clone DKEY-5B19 in ... 40 4.4
35gb|AC115917.10| Mus musculus chromosome 1, clone RP24-488H6, com... 40 4.4
36emb|AL354829.8| Human DNA sequence from clone RP11-218B22 on chr... 40 4.4
37emb|AL121581.41|HS1022E24 Human DNA sequence from clone RP5-1022... 40 4.4
38emb|BX908807.1| Neurospora crassa DNA linkage group III BAC cont... 40 4.4
39emb|AJ720708.1| Gallus gallus mRNA for hypothetical protein, clo... 40 4.4
40gb|AC163282.3| Mus musculus BAC clone RP23-454I20 from chromosom... 40 4.4
41ref|NM_001012902.1| Gallus gallus AT rich interactive domain 4A ... 40 4.4
42gb|AC117372.2| Homo sapiens 12 BAC RP11-266O15 (Roswell Park Can... 40 4.4
43gb|AC007134.10| Arabidopsis thaliana chromosome 2 clone F7H1 map... 40 4.4
44gb|AC073614.17| Homo sapiens Xp BAC RP11-617O8 (Roswell Park Can... 40 4.4
45gb|S66427.1| RBP1=retinoblastoma binding protein 1 [human, Nalm-... 40 4.4
46ref|XM_626196.1| Cryptosporidium parvum Iowa II Alg5 like dolich... 40 4.4
47emb|CR386280.1| Gallus gallus finished cDNA, clone ChEST57c20 40 4.4
48dbj|AK033606.1| Mus musculus adult male cecum cDNA, RIKEN full-l... 40 4.4
49dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 40 4.4
50gb|AC046130.25| Homo sapiens 12 BAC RP11-847H18 (Roswell Park Ca... 40 4.4
51ref|NM_172891.1| Mus musculus serine/threonine/tyrosine kinase 1... 40 4.4
52ref|XM_234281.3| PREDICTED: Rattus norvegicus AT rich interactiv... 40 4.4
53gb|AC009302.2| Homo sapiens BAC clone RP11-71J24 from 2, complet... 40 4.4
54dbj|AP005801.3| Oryza sativa (japonica cultivar-group) genomic D... 40 4.4
55dbj|AP005780.2| Oryza sativa (japonica cultivar-group) genomic D... 40 4.4
56emb|CR383683.17| Zebrafish DNA sequence from clone DKEY-114C3 in... 40 4.4
57emb|BX000462.10| Zebrafish DNA sequence from clone DKEY-114F6 in... 40 4.4
58gb|AY105877.1| Zea mays PCO119646 mRNA sequence 40 4.4
59emb|AL139021.6|CNS01DX3 Human chromosome 14 DNA sequence BAC R-5... 40 4.4
60emb|BX465834.20| Zebrafish DNA sequence from clone CH211-202E12 ... 40 4.4
61gb|CP000190.1| Drosophila melanogaster genomic scaffold 21100002... 40 4.4
62gb|AC145958.3| Gallus gallus BAC clone CH261-16J12 from chromoso... 40 4.4
63gb|AC134594.5| Mus musculus BAC clone RP23-388B6 from 12, comple... 40 4.4
64dbj|AP006116.1| Lotus japonicus genomic DNA, chromosome 1, clone... 40 4.4
65emb|AL714027.8| Mouse DNA sequence from clone RP23-96E23 on chro... 40 4.4
66emb|AL365317.22| Mouse DNA sequence from clone RP23-179K8 on chr... 40 4.4 
>dbj|AK067501.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013110H12, full
            insert sequence
          Length = 1438

 Score =  109 bits (55), Expect = 6e-21
 Identities = 79/87 (90%)
 Strand = Plus / Minus

                                                                        
Query: 189  gcctgaaacaaaacctcccccactctataaacagatgccattctggggctccagcaccac 248
            |||||||||||||||||| ||||||||||||||| ||| ||||||| ||||||||| |||
Sbjct: 1143 gcctgaaacaaaacctccgccactctataaacaggtgcgattctggagctccagcatcac 1084

                                       
Query: 249  aacttattgtgtccaccgcgattgaat 275
            |||||||| | |||||| |||||||||
Sbjct: 1083 aacttattatttccaccacgattgaat 1057
to top
>emb|AL731607.3|OSJN00250 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0063C18,
              complete sequence
          Length = 150416

 Score = 97.6 bits (49), Expect = 2e-17
 Identities = 70/77 (90%)
 Strand = Plus / Minus

                                                                          
Query: 189    gcctgaaacaaaacctcccccactctataaacagatgccattctggggctccagcaccac 248
              |||||||||||||||||| ||||||||||||||| ||| ||||||| ||||||||| |||
Sbjct: 128586 gcctgaaacaaaacctccgccactctataaacaggtgcgattctggagctccagcatcac 128527

                               
Query: 249    aacttattgtgtccacc 265
              |||||||| | ||||||
Sbjct: 128526 aacttattatttccacc 128510
to top
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 97.6 bits (49), Expect = 2e-17
 Identities = 70/77 (90%)
 Strand = Plus / Minus

                                                                            
Query: 189      gcctgaaacaaaacctcccccactctataaacagatgccattctggggctccagcaccac 248
                |||||||||||||||||| ||||||||||||||| ||| ||||||| ||||||||| |||
Sbjct: 32769153 gcctgaaacaaaacctccgccactctataaacaggtgcgattctggagctccagcatcac 32769094

                                 
Query: 249      aacttattgtgtccacc 265
                |||||||| | ||||||
Sbjct: 32769093 aacttattatttccacc 32769077
to top
>emb|AL732332.3| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0306F03, complete
             sequence
          Length = 91539

 Score = 97.6 bits (49), Expect = 2e-17
 Identities = 70/77 (90%)
 Strand = Plus / Minus

                                                                         
Query: 189   gcctgaaacaaaacctcccccactctataaacagatgccattctggggctccagcaccac 248
             |||||||||||||||||| ||||||||||||||| ||| ||||||| ||||||||| |||
Sbjct: 39397 gcctgaaacaaaacctccgccactctataaacaggtgcgattctggagctccagcatcac 39338

                              
Query: 249   aacttattgtgtccacc 265
             |||||||| | ||||||
Sbjct: 39337 aacttattatttccacc 39321
to top
>emb|AL606454.3|OSJN00009 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0033G05,
             complete sequence
          Length = 142556

 Score = 97.6 bits (49), Expect = 2e-17
 Identities = 70/77 (90%)
 Strand = Plus / Minus

                                                                         
Query: 189   gcctgaaacaaaacctcccccactctataaacagatgccattctggggctccagcaccac 248
             |||||||||||||||||| ||||||||||||||| ||| ||||||| ||||||||| |||
Sbjct: 31443 gcctgaaacaaaacctccgccactctataaacaggtgcgattctggagctccagcatcac 31384

                              
Query: 249   aacttattgtgtccacc 265
             |||||||| | ||||||
Sbjct: 31383 aacttattatttccacc 31367
to top
>gb|AC109170.10| Mus musculus chromosome 8, clone RP23-87B3, complete sequence
          Length = 274518

 Score = 44.1 bits (22), Expect = 0.28
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 52    gcagggaaatgaaatacagtac 73
             ||||||||||||||||||||||
Sbjct: 76563 gcagggaaatgaaatacagtac 76542
to top
>gb|AC123794.4| Mus musculus BAC clone RP24-315P14 from chromosome 8, complete sequence
          Length = 187246

 Score = 44.1 bits (22), Expect = 0.28
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 52    gcagggaaatgaaatacagtac 73
             ||||||||||||||||||||||
Sbjct: 85868 gcagggaaatgaaatacagtac 85847
to top
>gb|AY104098.1| Zea mays PCO119647 mRNA sequence
          Length = 1235

 Score = 44.1 bits (22), Expect = 0.28
 Identities = 46/54 (85%)
 Strand = Plus / Minus

                                                                  
Query: 191  ctgaaacaaaacctcccccactctataaacagatgccattctggggctccagca 244
            ||||| ||||| ||||  || ||||||||||||| | ||||||| |||||||||
Sbjct: 1013 ctgaatcaaaatctccatcattctataaacagatacaattctggagctccagca 960
to top
>emb|BX255949.3| Zebrafish DNA sequence from clone DKEY-76F5 in linkage group 2,
             complete sequence
          Length = 214484

 Score = 44.1 bits (22), Expect = 0.28
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                       
Query: 13    caatgtctgaataaatatatatgtaa 38
             ||||||||||| ||||||||||||||
Sbjct: 13117 caatgtctgaaaaaatatatatgtaa 13092
to top
>emb|AL935181.5| Zebrafish DNA sequence from clone CH211-162K9, complete sequence
          Length = 156592

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 14    aatgtctgaataaatatatat 34
             |||||||||||||||||||||
Sbjct: 33307 aatgtctgaataaatatatat 33287
to top
>gb|AC114644.10| Mus musculus chromosome 1, clone RP24-128L10, complete sequence
          Length = 137391

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 53    cagggaaatgaaatacagtacaaa 76
             ||||||||||||||||||| ||||
Sbjct: 57179 cagggaaatgaaatacagttcaaa 57202
to top
>ref|XM_516202.1| PREDICTED: Pan troglodytes hypothetical protein XP_516202
            (LOC460074), mRNA
          Length = 10214

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 176  ctgcacacagcctgcctgaa 195
            ||||||||||||||||||||
Sbjct: 6418 ctgcacacagcctgcctgaa 6437
to top
>ref|XM_873163.1| PREDICTED: Bos taurus similar to retinoblastoma-binding protein 1
            isoform I, transcript variant 4 (LOC531515), mRNA
          Length = 5925

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 13   caatgtctgaataaatatat 32
            ||||||||||||||||||||
Sbjct: 4671 caatgtctgaataaatatat 4652
to top
>ref|XM_873064.1| PREDICTED: Bos taurus similar to retinoblastoma-binding protein 1
            isoform I, transcript variant 3 (LOC531515), mRNA
          Length = 5970

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 13   caatgtctgaataaatatat 32
            ||||||||||||||||||||
Sbjct: 4716 caatgtctgaataaatatat 4697
to top
>ref|XM_610013.2| PREDICTED: Bos taurus similar to retinoblastoma-binding protein 1
            isoform I, transcript variant 1 (LOC531515), mRNA
          Length = 5250

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 13   caatgtctgaataaatatat 32
            ||||||||||||||||||||
Sbjct: 3996 caatgtctgaataaatatat 3977
to top
>ref|XM_864346.1| PREDICTED: Bos taurus similar to retinoblastoma-binding protein 1
            isoform I, transcript variant 2 (LOC531515), mRNA
          Length = 6132

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 13   caatgtctgaataaatatat 32
            ||||||||||||||||||||
Sbjct: 4878 caatgtctgaataaatatat 4859
to top
>gb|AC112794.4| Mus musculus chromosome 12 clone RP24-121O24, complete sequence
          Length = 171520

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 13    caatgtctgaataaatatat 32
             ||||||||||||||||||||
Sbjct: 31557 caatgtctgaataaatatat 31576
to top
>ref|XM_988474.1| PREDICTED: Mus musculus AT rich interactive domain 4A (Rbp1 like)
            (Arid4a), mRNA
          Length = 5780

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 13   caatgtctgaataaatatat 32
            ||||||||||||||||||||
Sbjct: 4965 caatgtctgaataaatatat 4946
to top
>ref|XM_898193.2| PREDICTED: Mus musculus AT rich interactive domain 4A (Rbp1 like),
            transcript variant 5 (Arid4a), mRNA
          Length = 4861

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 13   caatgtctgaataaatatat 32
            ||||||||||||||||||||
Sbjct: 4046 caatgtctgaataaatatat 4027
to top
>ref|XM_354675.4| PREDICTED: Mus musculus AT rich interactive domain 4A (Rbp1 like),
            transcript variant 1 (Arid4a), mRNA
          Length = 5780

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 13   caatgtctgaataaatatat 32
            ||||||||||||||||||||
Sbjct: 4965 caatgtctgaataaatatat 4946
to top
>ref|XM_898206.2| PREDICTED: Mus musculus AT rich interactive domain 4A (Rbp1 like),
            transcript variant 6 (Arid4a), mRNA
          Length = 5743

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 13   caatgtctgaataaatatat 32
            ||||||||||||||||||||
Sbjct: 4928 caatgtctgaataaatatat 4909
to top
>ref|XM_923512.2| PREDICTED: Mus musculus AT rich interactive domain 4A (Rbp1 like),
            transcript variant 9 (Arid4a), mRNA
          Length = 4861

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 13   caatgtctgaataaatatat 32
            ||||||||||||||||||||
Sbjct: 4046 caatgtctgaataaatatat 4027
to top
>ref|XM_914992.2| PREDICTED: Mus musculus AT rich interactive domain 4A (Rbp1 like),
            transcript variant 7 (Arid4a), mRNA
          Length = 5780

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 13   caatgtctgaataaatatat 32
            ||||||||||||||||||||
Sbjct: 4965 caatgtctgaataaatatat 4946
to top
>ref|XM_923528.2| PREDICTED: Mus musculus AT rich interactive domain 4A (Rbp1 like),
            transcript variant 12 (Arid4a), mRNA
          Length = 5743

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 13   caatgtctgaataaatatat 32
            ||||||||||||||||||||
Sbjct: 4928 caatgtctgaataaatatat 4909
to top
>gb|BC037715.1| Mus musculus AT rich interactive domain 4A (Rbp1 like), mRNA (cDNA
            clone IMAGE:4241494), partial cds
          Length = 3028

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 13   caatgtctgaataaatatat 32
            ||||||||||||||||||||
Sbjct: 2957 caatgtctgaataaatatat 2938
to top
>gb|AC124728.5| Mus musculus BAC clone RP23-470C22 from chromosome 6, complete sequence
          Length = 183845

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 22     aataaatatatatgtaactaaagc 45
              |||||||||| |||||||||||||
Sbjct: 140757 aataaatataaatgtaactaaagc 140734
to top
>gb|AC122191.4| Mus musculus BAC clone RP23-42J4 from 6, complete sequence
          Length = 250147

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 16     tgtctgaataaatatatatg 35
              ||||||||||||||||||||
Sbjct: 127849 tgtctgaataaatatatatg 127868
to top
>ref|XM_537461.2| PREDICTED: Canis familiaris similar to retinoblastoma-binding protein
            1 isoform III, transcript variant 1 (LOC480339), mRNA
          Length = 5673

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 13   caatgtctgaataaatatat 32
            ||||||||||||||||||||
Sbjct: 4668 caatgtctgaataaatatat 4649
to top
>ref|XM_859819.1| PREDICTED: Canis familiaris similar to retinoblastoma-binding protein
            1 isoform III, transcript variant 2 (LOC480339), mRNA
          Length = 4786

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 13   caatgtctgaataaatatat 32
            ||||||||||||||||||||
Sbjct: 3781 caatgtctgaataaatatat 3762
to top
>ref|XM_662867.1| Cryptosporidium hominis TU502 dolichyl phosphate
          glucosyltransferase (Chro.50118) partial mRNA
          Length = 1089

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                              
Query: 26 aatatatatgtaactaaagc 45
          ||||||||||||||||||||
Sbjct: 98 aatatatatgtaactaaagc 79
to top
>ref|NM_023001.1| Homo sapiens AT rich interactive domain 4A (RBP1-like) (ARID4A),
            transcript variant 3, mRNA
          Length = 4627

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 13   caatgtctgaataaatatat 32
            ||||||||||||||||||||
Sbjct: 4569 caatgtctgaataaatatat 4550
to top
>ref|NM_002892.2| Homo sapiens AT rich interactive domain 4A (RBP1-like) (ARID4A),
            transcript variant 1, mRNA
          Length = 4834

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 13   caatgtctgaataaatatat 32
            ||||||||||||||||||||
Sbjct: 4776 caatgtctgaataaatatat 4757
to top
>ref|NM_023000.1| Homo sapiens AT rich interactive domain 4A (RBP1-like) (ARID4A),
            transcript variant 2, mRNA
          Length = 4672

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 13   caatgtctgaataaatatat 32
            ||||||||||||||||||||
Sbjct: 4614 caatgtctgaataaatatat 4595
to top
>emb|CR392362.23| Zebrafish DNA sequence from clone DKEY-5B19 in linkage group 8,
             complete sequence
          Length = 114516

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 23    ataaatatatatgtaactaa 42
             ||||||||||||||||||||
Sbjct: 77694 ataaatatatatgtaactaa 77675
to top
>gb|AC115917.10| Mus musculus chromosome 1, clone RP24-488H6, complete sequence
          Length = 186588

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 7      aatacacaatgtctgaataaatat 30
              ||||||||||| ||||||||||||
Sbjct: 174500 aatacacaatggctgaataaatat 174477
to top
>emb|AL354829.8| Human DNA sequence from clone RP11-218B22 on chromosome 13 Contains the
             3' end of the DIAPH3 gene for diaphanous homolog 3
             (Drosophila), complete sequence
          Length = 154212

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 22    aataaatatatatgtaactaaagc 45
             ||||||||||||||||| ||||||
Sbjct: 98061 aataaatatatatgtaaataaagc 98038
to top
>emb|AL121581.41|HS1022E24 Human DNA sequence from clone RP5-1022E24 on chromosome 20 Contains the
             3' end of the OPRL1 gene for opiate receptor-like 1
             protein, the GPR8 gene encoding a G protein-coupled
             receptor, the KIAA0835 gene encoding a protein similar to 
             the myelin transcription factor 1 (MYT1), a novel gene, 7
             CpG islands, ESTs, STSs and GSSs, complete sequence
          Length = 179888

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 113   gcaaatgtttggtttccaaa 132
             ||||||||||||||||||||
Sbjct: 70743 gcaaatgtttggtttccaaa 70724
to top
>emb|BX908807.1| Neurospora crassa DNA linkage group III BAC contig B13B7
          Length = 93134

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 256   tgtgtccaccgcgattgaat 275
             ||||||||||||||||||||
Sbjct: 75194 tgtgtccaccgcgattgaat 75175
to top
>emb|AJ720708.1| Gallus gallus mRNA for hypothetical protein, clone 23o7
          Length = 4882

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 13   caatgtctgaataaatatat 32
            ||||||||||||||||||||
Sbjct: 4822 caatgtctgaataaatatat 4803
to top
>gb|AC163282.3| Mus musculus BAC clone RP23-454I20 from chromosome 12, complete sequence
          Length = 202583

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 14     aatgtctgaataaatatatatgta 37
              |||||||| |||||||||||||||
Sbjct: 142029 aatgtctgcataaatatatatgta 142006
to top
>ref|NM_001012902.1| Gallus gallus AT rich interactive domain 4A (RBP1-like) (ARID4A),
            mRNA
          Length = 4882

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 13   caatgtctgaataaatatat 32
            ||||||||||||||||||||
Sbjct: 4822 caatgtctgaataaatatat 4803
to top
>gb|AC117372.2| Homo sapiens 12 BAC RP11-266O15 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 165301

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                          
Query: 16     tgtctgaataaatatatatgtaactaaa 43
              |||||||||| | |||||||||||||||
Sbjct: 129930 tgtctgaatataaatatatgtaactaaa 129957
to top
>gb|AC007134.10| Arabidopsis thaliana chromosome 2 clone F7H1 map mi398, complete
             sequence
          Length = 84544

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 249   aacttattgtgtccaccgcgattg 272
             |||| |||||||||||||||||||
Sbjct: 50064 aactcattgtgtccaccgcgattg 50041
to top
>gb|AC073614.17| Homo sapiens Xp BAC RP11-617O8 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 129801

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 20    tgaataaatatatatgtaactaaa 43
             ||||||||||||||||| ||||||
Sbjct: 44631 tgaataaatatatatgttactaaa 44608
to top
>gb|S66427.1| RBP1=retinoblastoma binding protein 1 [human, Nalm-6 pre-B cell
            leukemia, mRNA, 4834 nt]
          Length = 4834

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 13   caatgtctgaataaatatat 32
            ||||||||||||||||||||
Sbjct: 4776 caatgtctgaataaatatat 4757
to top
>ref|XM_626196.1| Cryptosporidium parvum Iowa II Alg5 like dolichyl-phosphate
          beta-glucosyltransferase (cgd5_2590), partial mRNA
          Length = 1089

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                              
Query: 26 aatatatatgtaactaaagc 45
          ||||||||||||||||||||
Sbjct: 98 aatatatatgtaactaaagc 79
to top
>emb|CR386280.1| Gallus gallus finished cDNA, clone ChEST57c20
          Length = 1141

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 13  caatgtctgaataaatatat 32
           ||||||||||||||||||||
Sbjct: 396 caatgtctgaataaatatat 377
to top
>dbj|AK033606.1| Mus musculus adult male cecum cDNA, RIKEN full-length enriched
           library, clone:9130025L13 product:Similar to FGF
           receptor 4B, full insert sequence
          Length = 3378

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 16  tgtctgaataaatatatatg 35
           ||||||||||||||||||||
Sbjct: 349 tgtctgaataaatatatatg 330
to top
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
               sequence
          Length = 22696651

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 115     aaatgtttggtttccaaagt 134
               ||||||||||||||||||||
Sbjct: 8990658 aaatgtttggtttccaaagt 8990639
to top
>gb|AC046130.25| Homo sapiens 12 BAC RP11-847H18 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 176600

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 16    tgtctgaataaatatatatgtaactaaa 43
             |||||||||| | |||||||||||||||
Sbjct: 79850 tgtctgaatataaatatatgtaactaaa 79877
to top
>ref|NM_172891.1| Mus musculus serine/threonine/tyrosine kinase 1 (Styk1), mRNA
          Length = 3378

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 16  tgtctgaataaatatatatg 35
           ||||||||||||||||||||
Sbjct: 349 tgtctgaataaatatatatg 330
to top
>ref|XM_234281.3| PREDICTED: Rattus norvegicus AT rich interactive domain 4A (Rbp1
            like) (predicted) (Arid4a_predicted), mRNA
          Length = 4822

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 13   caatgtctgaataaatatat 32
            ||||||||||||||||||||
Sbjct: 4697 caatgtctgaataaatatat 4678
to top
>gb|AC009302.2| Homo sapiens BAC clone RP11-71J24 from 2, complete sequence
          Length = 180970

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 185   gcctgcctgaaacaaaacctcccc 208
             |||||||||||| |||||||||||
Sbjct: 59920 gcctgcctgaaataaaacctcccc 59897
to top
>dbj|AP005801.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
              clone:OSJNBa0045M11
          Length = 159148

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 115    aaatgtttggtttccaaagt 134
              ||||||||||||||||||||
Sbjct: 150965 aaatgtttggtttccaaagt 150946
to top
>dbj|AP005780.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
             clone:OSJNBb0051H02
          Length = 136520

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 115   aaatgtttggtttccaaagt 134
             ||||||||||||||||||||
Sbjct: 34254 aaatgtttggtttccaaagt 34235
to top
>emb|CR383683.17| Zebrafish DNA sequence from clone DKEY-114C3 in linkage group 22,
            complete sequence
          Length = 153095

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 23   ataaatatatatgtaactaa 42
            ||||||||||||||||||||
Sbjct: 9470 ataaatatatatgtaactaa 9451
to top
>emb|BX000462.10| Zebrafish DNA sequence from clone DKEY-114F6 in linkage group 1, complete
              sequence
          Length = 167671

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 160    tgggccacaaatcaggctgcacac 183
              |||||||| |||||||||||||||
Sbjct: 161711 tgggccaccaatcaggctgcacac 161734
to top
>gb|AY105877.1| Zea mays PCO119646 mRNA sequence
          Length = 964

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 56/67 (83%), Gaps = 2/67 (2%)
 Strand = Plus / Minus

                                                                       
Query: 209 cactctataaacagatgccattctggggctccagcaccacaacttattgtgtccaccgcg 268
           |||||||||||||| | |  |||||| |||||||||   ||||||||||| ||||  |||
Sbjct: 603 cactctataaacaggtacagttctggagctccagca--tcaacttattgtttccagggcg 546

                  
Query: 269 attgaat 275
           |||||||
Sbjct: 545 attgaat 539
to top
>emb|AL139021.6|CNS01DX3 Human chromosome 14 DNA sequence BAC R-517O13 of library RPCI-11 from
             chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 176343

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 13    caatgtctgaataaatatat 32
             ||||||||||||||||||||
Sbjct: 36523 caatgtctgaataaatatat 36504
to top
>emb|BX465834.20| Zebrafish DNA sequence from clone CH211-202E12 in linkage group 5,
              complete sequence
          Length = 176520

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 24     taaatatatatgtaactaaa 43
              ||||||||||||||||||||
Sbjct: 112632 taaatatatatgtaactaaa 112651
to top
>gb|CP000190.1| Drosophila melanogaster genomic scaffold 211000022280673
          Length = 72576

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 268   gattgaataataattggaaa 287
             ||||||||||||||||||||
Sbjct: 50897 gattgaataataattggaaa 50916
to top
>gb|AC145958.3| Gallus gallus BAC clone CH261-16J12 from chromosome unknown, complete
              sequence
          Length = 207441

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 13     caatgtctgaataaatatat 32
              ||||||||||||||||||||
Sbjct: 138623 caatgtctgaataaatatat 138642
to top
>gb|AC134594.5| Mus musculus BAC clone RP23-388B6 from 12, complete sequence
          Length = 194521

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 14     aatgtctgaataaatatatatgta 37
              |||||||| |||||||||||||||
Sbjct: 191891 aatgtctgcataaatatatatgta 191914
to top
>dbj|AP006116.1| Lotus japonicus genomic DNA, chromosome 1, clone:LjT40C04, TM0199,
             complete sequence
          Length = 123325

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 22    aataaatatatatgtaacta 41
             ||||||||||||||||||||
Sbjct: 36903 aataaatatatatgtaacta 36922
to top
>emb|AL714027.8| Mouse DNA sequence from clone RP23-96E23 on chromosome X, complete
             sequence
          Length = 175809

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 24    taaatatatatgtaactaaa 43
             ||||||||||||||||||||
Sbjct: 56171 taaatatatatgtaactaaa 56152
to top
>emb|AL365317.22| Mouse DNA sequence from clone RP23-179K8 on chromosome 1, complete
             sequence
          Length = 187131

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 7     aatacacaatgtctgaataaatat 30
             ||||||||||| ||||||||||||
Sbjct: 99506 aatacacaatggctgaataaatat 99529


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,430,356
Number of Sequences: 3902068
Number of extensions: 4430356
Number of successful extensions: 98486
Number of sequences better than 10.0: 66
Number of HSP's better than 10.0 without gapping: 65
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 98337
Number of HSP's gapped (non-prelim): 149
length of query: 330
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 308
effective length of database: 17,147,199,772
effective search space: 5281337529776
effective search space used: 5281337529776
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top