ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart15e10 |
|---|---|
| Clone Library Name | barley_pub |
>GLYM_SOLTU (P50433) Serine hydroxymethyltransferase, mitochondrial precursor| (EC 2.1.2.1) (Serine methylase) (Glycine hydroxymethyltransferase) (SHMT) Length = 518 Score = 95.5 bits (236), Expect = 4e-20 Identities = 46/68 (67%), Positives = 53/68 (77%) Frame = -3 Query: 420 AEFFDSXXXXXXXXXXXXAGTKLKDFVATLQSDSNIQAEIAKLRHDVEEYAKQFPTIGFE 241 A+FFD+ GTKLKDFVATL+S + I++EIAKLRHDVEEYAKQFPTIGFE Sbjct: 451 ADFFDAAVKIAVKVKAETQGTKLKDFVATLESSAPIKSEIAKLRHDVEEYAKQFPTIGFE 510 Query: 240 KETMKYRN 217 KETMKY+N Sbjct: 511 KETMKYKN 518
>GLYM_ARATH (Q9SZJ5) Serine hydroxymethyltransferase, mitochondrial precursor| (EC 2.1.2.1) (Serine methylase) (Glycine hydroxymethyltransferase) (SHMT) Length = 517 Score = 92.0 bits (227), Expect = 5e-19 Identities = 43/68 (63%), Positives = 51/68 (75%) Frame = -3 Query: 420 AEFFDSXXXXXXXXXXXXAGTKLKDFVATLQSDSNIQAEIAKLRHDVEEYAKQFPTIGFE 241 AE+FD GTKLKDFV+ ++S S IQ+EIAKLRH+VEE+AKQFPTIGFE Sbjct: 450 AEYFDKAVTIALKVKSEAQGTKLKDFVSAMESSSTIQSEIAKLRHEVEEFAKQFPTIGFE 509 Query: 240 KETMKYRN 217 KETMKY+N Sbjct: 510 KETMKYKN 517
>GLYM_FLAPR (P49357) Serine hydroxymethyltransferase 1, mitochondrial precursor| (EC 2.1.2.1) (Serine methylase) (Glycine hydroxymethyltransferase) (SHMT) Length = 517 Score = 85.1 bits (209), Expect = 6e-17 Identities = 44/68 (64%), Positives = 49/68 (72%) Frame = -3 Query: 420 AEFFDSXXXXXXXXXXXXAGTKLKDFVATLQSDSNIQAEIAKLRHDVEEYAKQFPTIGFE 241 A FFD GTKLKDFV ++S S IQ+EI+KLRHDVEEYAKQFPTIGFE Sbjct: 451 AYFFDLAVKLAVKIKGEAKGTKLKDFVTAMES-SAIQSEISKLRHDVEEYAKQFPTIGFE 509 Query: 240 KETMKYRN 217 KETMKY+N Sbjct: 510 KETMKYKN 517
>GLYM_PEA (P34899) Serine hydroxymethyltransferase, mitochondrial precursor| (EC 2.1.2.1) (Serine methylase) (Glycine hydroxymethyltransferase) (SHMT) Length = 518 Score = 85.1 bits (209), Expect = 6e-17 Identities = 40/66 (60%), Positives = 48/66 (72%) Frame = -3 Query: 420 AEFFDSXXXXXXXXXXXXAGTKLKDFVATLQSDSNIQAEIAKLRHDVEEYAKQFPTIGFE 241 AE+FD+ GTKLKDFV LQ+ S +Q+EI+KL+HDVEE+AKQFPTIGFE Sbjct: 451 AEYFDAAVSLALKVKAESKGTKLKDFVEALQTSSYVQSEISKLKHDVEEFAKQFPTIGFE 510 Query: 240 KETMKY 223 K TMKY Sbjct: 511 KATMKY 516
>GLYN_FLAPR (P49358) Serine hydroxymethyltransferase 2, mitochondrial precursor| (EC 2.1.2.1) (Serine methylase) (Glycine hydroxymethyltransferase) (SHMT) Length = 517 Score = 84.0 bits (206), Expect = 1e-16 Identities = 44/68 (64%), Positives = 48/68 (70%) Frame = -3 Query: 420 AEFFDSXXXXXXXXXXXXAGTKLKDFVATLQSDSNIQAEIAKLRHDVEEYAKQFPTIGFE 241 A FD GTKLKDFVA +QS S Q+EI+KLRHDVEEYAKQFPTIGFE Sbjct: 451 AYLFDLAVKLAVKIKGEAQGTKLKDFVAAMQS-SAFQSEISKLRHDVEEYAKQFPTIGFE 509 Query: 240 KETMKYRN 217 KETMKY+N Sbjct: 510 KETMKYKN 517
>GLYM_HUMAN (P34897) Serine hydroxymethyltransferase, mitochondrial precursor| (EC 2.1.2.1) (Serine methylase) (Glycine hydroxymethyltransferase) (SHMT) Length = 504 Score = 37.4 bits (85), Expect = 0.014 Identities = 17/40 (42%), Positives = 25/40 (62%) Frame = -3 Query: 357 KLKDFVATLQSDSNIQAEIAKLRHDVEEYAKQFPTIGFEK 238 KL+DF + L DS +A LR VE++A+ FP GF++ Sbjct: 464 KLQDFKSFLLKDSETSQRLANLRQRVEQFARAFPMPGFDE 503
>ARD1_RAT (P36407) GTP-binding protein ARD-1 (ADP-ribosylation factor domain| protein 1) (Tripartite motif protein 23) (Fragment) Length = 554 Score = 33.1 bits (74), Expect = 0.27 Identities = 24/65 (36%), Positives = 34/65 (52%), Gaps = 1/65 (1%) Frame = -3 Query: 363 GTKLKDFVATLQSDSNIQAEIA-KLRHDVEEYAKQFPTIGFEKETMKYRN*ALLCFNSKE 187 G K++ V TL D + I KL+ D E+ + PTIGF ET++Y+N L F + Sbjct: 380 GPKMEIRVVTLGLDGAGKTTILFKLKQD--EFMQPIPTIGFNVETVEYKN---LKFTIWD 434 Query: 186 ANRKH 172 KH Sbjct: 435 VGEKH 439
>GLYM_RABIT (P14519) Serine hydroxymethyltransferase, mitochondrial precursor| (EC 2.1.2.1) (Serine methylase) (Glycine hydroxymethyltransferase) (SHMT) Length = 504 Score = 32.7 bits (73), Expect = 0.36 Identities = 15/38 (39%), Positives = 22/38 (57%) Frame = -3 Query: 357 KLKDFVATLQSDSNIQAEIAKLRHDVEEYAKQFPTIGF 244 KL+DF + L D +A LR V+++A+ FP GF Sbjct: 464 KLQDFKSFLLKDPETSQHLADLRRRVQQFARAFPMPGF 501
>ARD1_MOUSE (Q8BGX0) GTP-binding protein ARD-1 (ADP-ribosylation factor domain| protein 1) (Tripartite motif protein 23) Length = 574 Score = 32.3 bits (72), Expect = 0.46 Identities = 24/65 (36%), Positives = 34/65 (52%), Gaps = 1/65 (1%) Frame = -3 Query: 363 GTKLKDFVATLQSDSNIQAEIA-KLRHDVEEYAKQFPTIGFEKETMKYRN*ALLCFNSKE 187 G K++ V TL D + I KL+ D E+ + PTIGF ET++Y+N L F + Sbjct: 400 GPKMEIRVVTLGLDGAGKTTILFKLKQD--EFMQPIPTIGFNVETVEYKN---LKFTIWD 454 Query: 186 ANRKH 172 KH Sbjct: 455 VGGKH 459
>ARD1_HUMAN (P36406) GTP-binding protein ARD-1 (ADP-ribosylation factor domain| protein 1) (Tripartite motif protein 23) (RING finger protein 46) Length = 574 Score = 32.3 bits (72), Expect = 0.46 Identities = 24/65 (36%), Positives = 34/65 (52%), Gaps = 1/65 (1%) Frame = -3 Query: 363 GTKLKDFVATLQSDSNIQAEIA-KLRHDVEEYAKQFPTIGFEKETMKYRN*ALLCFNSKE 187 G K++ V TL D + I KL+ D E+ + PTIGF ET++Y+N L F + Sbjct: 400 GPKMEIRVVTLGLDGAGKTTILFKLKQD--EFMQPIPTIGFNVETVEYKN---LKFTIWD 454 Query: 186 ANRKH 172 KH Sbjct: 455 VGGKH 459
>TEP1_HUMAN (Q99973) Telomerase protein component 1 (Telomerase-associated| protein 1) (Telomerase protein 1) (p240) (p80 telomerase homolog) Length = 2627 Score = 31.2 bits (69), Expect = 1.0 Identities = 23/81 (28%), Positives = 30/81 (37%) Frame = +2 Query: 179 LFASLLLKHSSA*FLYFMVSFSNPIVGNCFAYSSTSWRSFAISAWMLLSDCKVATKSFSL 358 LF SL + H + LY + + NC SWR+ S + LS C +A KS S Sbjct: 127 LFQSLQISHMTQADLYRVNN------SNCLLSEPPSWRAQHFSKGLDLSTCPIALKSISA 180 Query: 359 VPXXXXXXXXXXXXXESKNSA 421 E K A Sbjct: 181 TETAQEATLGRWFDSEEKKGA 201
>HST6_CANAL (P53706) ATP-dependent permease HST6 (STE6 homolog)| Length = 1323 Score = 29.6 bits (65), Expect = 3.0 Identities = 15/49 (30%), Positives = 27/49 (55%) Frame = +1 Query: 271 IFLHIVAKLCNFSLDVAVGLQSGNKVLQFGTCCCSFNLQSQVHCRIEKF 417 +F + +KL + SLD ++GL S K+LQ+ S + + V + +F Sbjct: 694 VFSYCFSKLLSTSLDSSIGLNSTQKILQWSCISLSIAIFTGVTSYLSEF 742
>NU4C_PSINU (Q8WHX8) NAD(P)H-quinone oxidoreductase chain 4, chloroplast (EC| 1.6.5.-) (NAD(P)H dehydrogenase, chain 4) (NADH-plastoquinone oxidoreductase chain 4) Length = 498 Score = 29.3 bits (64), Expect = 3.9 Identities = 23/68 (33%), Positives = 32/68 (47%), Gaps = 1/68 (1%) Frame = +2 Query: 128 RFIMDLLFTWTCPQLCFLFASLLLKHSSA*FLYF-MVSFSNPIVGNCFAYSSTSWRSFAI 304 R M+LL P FLF+ LL+ + Y ++SFS P + AYSS S F I Sbjct: 263 RINMELL-----PHAHFLFSPLLVTMGAVQIAYASLISFSLPNIKRRIAYSSVSHMGFVI 317 Query: 305 SAWMLLSD 328 ++D Sbjct: 318 IGISSITD 325
>VGLG_HRSV3 (P27022) Major surface glycoprotein G (Attachment glycoprotein G)| Length = 297 Score = 29.3 bits (64), Expect = 3.9 Identities = 13/34 (38%), Positives = 17/34 (50%) Frame = -2 Query: 337 HFAIRQQHPS*NCKASPRCGGICKTIPNNRIRER 236 HF + P C +P C ICK IPN + +R Sbjct: 164 HFEVFNFVPCSICSNNPTCWAICKRIPNKKPGKR 197
>VGLG_HRSV2 (P27021) Major surface glycoprotein G (Attachment glycoprotein G)| Length = 297 Score = 29.3 bits (64), Expect = 3.9 Identities = 13/34 (38%), Positives = 17/34 (50%) Frame = -2 Query: 337 HFAIRQQHPS*NCKASPRCGGICKTIPNNRIRER 236 HF + P C +P C ICK IPN + +R Sbjct: 164 HFEVFNFVPCSICSNNPTCWAICKRIPNKKPGKR 197
>ATRX_MOUSE (Q61687) Transcriptional regulator ATRX (EC 3.6.1.-) (ATP-dependent| helicase ATRX) (X-linked nuclear protein) (Heterochromatin protein 2) (HP1 alpha-interacting protein) (HP1-BP38 protein) Length = 2476 Score = 29.3 bits (64), Expect = 3.9 Identities = 11/31 (35%), Positives = 20/31 (64%), Gaps = 1/31 (3%) Frame = +3 Query: 261 IVLHIPPHRGEALQFQLGCCCR-IAKWQQSP 350 +V+ + PH+ + +QF CCC + K ++SP Sbjct: 1541 MVIKLKPHQVDGVQFMWDCCCESVEKTKKSP 1571
>ATRX_PONPY (Q7YQM3) Transcriptional regulator ATRX (EC 3.6.1.-) (ATP-dependent| helicase ATRX) (X-linked helicase II) (X-linked nuclear protein) (XNP) Length = 2492 Score = 29.3 bits (64), Expect = 3.9 Identities = 11/31 (35%), Positives = 20/31 (64%), Gaps = 1/31 (3%) Frame = +3 Query: 261 IVLHIPPHRGEALQFQLGCCCR-IAKWQQSP 350 +V+ + PH+ + +QF CCC + K ++SP Sbjct: 1556 MVIKLKPHQVDGVQFMWDCCCESVKKTKKSP 1586
>ATRX_PANTR (Q7YQM4) Transcriptional regulator ATRX (EC 3.6.1.-) (ATP-dependent| helicase ATRX) (X-linked helicase II) (X-linked nuclear protein) (XNP) Length = 2492 Score = 29.3 bits (64), Expect = 3.9 Identities = 11/31 (35%), Positives = 20/31 (64%), Gaps = 1/31 (3%) Frame = +3 Query: 261 IVLHIPPHRGEALQFQLGCCCR-IAKWQQSP 350 +V+ + PH+ + +QF CCC + K ++SP Sbjct: 1556 MVIKLKPHQVDGVQFMWDCCCESVKKTKKSP 1586
>ATRX_HUMAN (P46100) Transcriptional regulator ATRX (EC 3.6.1.-) (ATP-dependent| helicase ATRX) (X-linked helicase II) (X-linked nuclear protein) (XNP) (Znf-HX) Length = 2492 Score = 29.3 bits (64), Expect = 3.9 Identities = 11/31 (35%), Positives = 20/31 (64%), Gaps = 1/31 (3%) Frame = +3 Query: 261 IVLHIPPHRGEALQFQLGCCCR-IAKWQQSP 350 +V+ + PH+ + +QF CCC + K ++SP Sbjct: 1556 MVIKLKPHQVDGVQFMWDCCCESVKKTKKSP 1586
>ICOSL_MOUSE (Q9JHJ8) ICOS ligand precursor (B7 homolog 2) (B7-H2) (B7-like| protein Gl50) (B7-related protein 1) (B7RP-1) (LICOS) (CD275 antigen) Length = 322 Score = 28.9 bits (63), Expect = 5.1 Identities = 17/56 (30%), Positives = 30/56 (53%) Frame = +1 Query: 184 CFLAVETQQCLVPVLHGLFLESDCWELFCIFLHIVAKLCNFSLDVAVGLQSGNKVL 351 CF+++ T+Q PV L + S + +FL +++ LC S + VG G+ V+ Sbjct: 7 CFVSLGTRQ---PVWKKLHVSSGFFSGLGLFLLLLSSLCAASAETEVGAMVGSNVV 59
>VGLG_HRSV7 (P27026) Major surface glycoprotein G (Attachment glycoprotein G)| Length = 297 Score = 28.9 bits (63), Expect = 5.1 Identities = 12/30 (40%), Positives = 15/30 (50%) Frame = -2 Query: 337 HFAIRQQHPS*NCKASPRCGGICKTIPNNR 248 HF + P C +P C ICK IPN + Sbjct: 164 HFEVFNFVPCSICSNNPTCWAICKRIPNKK 193
>VGLG_HRSV6 (P27025) Major surface glycoprotein G (Attachment glycoprotein G)| Length = 297 Score = 28.9 bits (63), Expect = 5.1 Identities = 12/30 (40%), Positives = 15/30 (50%) Frame = -2 Query: 337 HFAIRQQHPS*NCKASPRCGGICKTIPNNR 248 HF + P C +P C ICK IPN + Sbjct: 164 HFEVFNFVPCSICSNNPTCWAICKRIPNKK 193
>VGLG_HRSV4 (P27023) Major surface glycoprotein G (Attachment glycoprotein G)| Length = 297 Score = 28.9 bits (63), Expect = 5.1 Identities = 12/30 (40%), Positives = 15/30 (50%) Frame = -2 Query: 337 HFAIRQQHPS*NCKASPRCGGICKTIPNNR 248 HF + P C +P C ICK IPN + Sbjct: 164 HFEVFNFVPCSICSNNPTCWAICKRIPNKK 193
>ALG6_HUMAN (Q9Y672) Dolichyl pyrophosphate Man9GlcNAc2| alpha-1,3-glucosyltransferase (EC 2.4.1.-) (Dolichyl-P-Glc:Man9GlcNAc2-PP-dolichyl glucosyltransferase) Length = 507 Score = 28.9 bits (63), Expect = 5.1 Identities = 28/99 (28%), Positives = 45/99 (45%), Gaps = 18/99 (18%) Frame = +1 Query: 43 SYSMCL-----Q*ETIDKVPIFCKMLGFLLHKMALHHGSIVYMDLSSVVLP---VCFLAV 198 S + CL Q E +P FC +LG K G ++ + L+ +V+ +C+L Sbjct: 190 SLAFCLAINYKQMELYHALPFFCFLLGKCFKKGLKGKGFVLLVKLACIVVASFVLCWLPF 249 Query: 199 ETQ--------QCLVPVLHGLFLE--SDCWELFCIFLHI 285 T+ + L PV GLF + ++ W F +FL I Sbjct: 250 FTEREQTLQVLRRLFPVDRGLFEDKVANIWCSFNVFLKI 288
>VGLG_HRSVL (P20895) Major surface glycoprotein G (Attachment glycoprotein G)| Length = 298 Score = 28.9 bits (63), Expect = 5.1 Identities = 12/30 (40%), Positives = 15/30 (50%) Frame = -2 Query: 337 HFAIRQQHPS*NCKASPRCGGICKTIPNNR 248 HF + P C +P C ICK IPN + Sbjct: 164 HFEVFNFVPCSICSNNPTCWAICKRIPNKK 193
>VGLG_HRSVA (P03423) Major surface glycoprotein G (Attachment glycoprotein G)| Length = 298 Score = 28.9 bits (63), Expect = 5.1 Identities = 12/30 (40%), Positives = 15/30 (50%) Frame = -2 Query: 337 HFAIRQQHPS*NCKASPRCGGICKTIPNNR 248 HF + P C +P C ICK IPN + Sbjct: 164 HFEVFNFVPCSICSNNPTCWAICKRIPNKK 193
>GLYC_RABIT (P07511) Serine hydroxymethyltransferase, cytosolic (EC 2.1.2.1)| (Serine methylase) (Glycine hydroxymethyltransferase) (SHMT) Length = 483 Score = 28.5 bits (62), Expect = 6.7 Identities = 14/36 (38%), Positives = 18/36 (50%) Frame = -3 Query: 354 LKDFVATLQSDSNIQAEIAKLRHDVEEYAKQFPTIG 247 LK+F L D Q + LR +VE +A FP G Sbjct: 444 LKEFKEKLAGDEKHQRAVRALRQEVESFAALFPLPG 479
>VGLG_HRSV8 (P23041) Major surface glycoprotein G (Attachment glycoprotein G)| Length = 292 Score = 28.1 bits (61), Expect = 8.8 Identities = 12/34 (35%), Positives = 19/34 (55%) Frame = -2 Query: 337 HFAIRQQHPS*NCKASPRCGGICKTIPNNRIRER 236 HF + P C + C ICKTIP+N+ +++ Sbjct: 164 HFEVFNFVPCSICGNNQLCKSICKTIPSNKPKKK 197
>VGLG_HRSV1 (P20896) Major surface glycoprotein G (Attachment glycoprotein G)| Length = 292 Score = 28.1 bits (61), Expect = 8.8 Identities = 12/34 (35%), Positives = 19/34 (55%) Frame = -2 Query: 337 HFAIRQQHPS*NCKASPRCGGICKTIPNNRIRER 236 HF + P C + C ICKTIP+N+ +++ Sbjct: 164 HFEVFNFVPCSICGNNQLCKSICKTIPSNKPKKK 197
>SNAP_DROME (Q23983) Soluble NSF attachment protein (SNAP)| (N-ethylmaleimide-sensitive factor attachment protein) Length = 292 Score = 28.1 bits (61), Expect = 8.8 Identities = 11/46 (23%), Positives = 28/46 (60%) Frame = -3 Query: 318 NIQAEIAKLRHDVEEYAKQFPTIGFEKETMKYRN*ALLCFNSKEAN 181 ++ ++ +H +E+YA+Q+P +++ +++ +LC N +E N Sbjct: 211 HLSVDLLNAQHAIEKYAQQYPAF---QDSREFKLIKVLCENLEEQN 253 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 60,731,448 Number of Sequences: 219361 Number of extensions: 1188530 Number of successful extensions: 3609 Number of sequences better than 10.0: 30 Number of HSP's better than 10.0 without gapping: 3516 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3607 length of database: 80,573,946 effective HSP length: 101 effective length of database: 58,418,485 effective search space used: 2278320915 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
