ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart15d11
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 206 5e-50
2dbj|AP004570.5| Oryza sativa (japonica cultivar-group) genomic D... 206 5e-50
3dbj|AP004274.5| Oryza sativa (japonica cultivar-group) genomic D... 206 5e-50
4dbj|AK061122.1| Oryza sativa (japonica cultivar-group) cDNA clon... 206 5e-50
5dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.40
6dbj|AP001551.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.40
7ref|XM_730364.1| Plasmodium chabaudi chabaudi hypothetical prote... 42 1.6
8gb|AF004835.1|AF004835 Brevibacillus brevis tyrocidine biosynthe... 42 1.6
9ref|XM_470581.1| Oryza sativa (japonica cultivar-group), predic... 40 6.2
10ref|XM_507434.1| PREDICTED Oryza sativa (japonica cultivar-group... 40 6.2
11ref|XM_463983.1| Oryza sativa (japonica cultivar-group), mRNA 40 6.2
12ref|XM_506704.2| PREDICTED Oryza sativa (japonica cultivar-group... 40 6.2
13gb|AE000516.2| Mycobacterium tuberculosis CDC1551, complete genome 40 6.2
14gb|BC056807.1| Danio rerio zgc:63724, mRNA (cDNA clone MGC:63724... 40 6.2
15gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 40 6.2
16gb|AY338236.1| Oryza sativa (japonica cultivar-group) putative a... 40 6.2
17gb|AC105731.2| Oryza sativa (japonica cultivar-group) chromosome... 40 6.2
18gb|AC116713.8| Mus musculus chromosome 9, clone RP23-118M23, com... 40 6.2
19gb|AC164556.2| Mus musculus BAC clone RP23-334L9 from chromosome... 40 6.2
20emb|BX842579.1| Mycobacterium tuberculosis H37Rv complete genome... 40 6.2
21emb|BX248341.1| Mycobacterium bovis subsp. bovis AF2122/97 compl... 40 6.2
22gb|AF254925.1| Streptomyces maritimus enterocin biosynthetic gen... 40 6.2
23gb|AF432227.1| Myxococcus xanthus putative transcription factor ... 40 6.2
24gb|AF220003.1| Rhodospirillum centenum (Rhodocista centenaria) p... 40 6.2
25ref|NM_200618.1| Danio rerio zgc:63724 (zgc:63724), mRNA 40 6.2
26dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.2
27dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.2
28dbj|AP004886.3| Oryza sativa (japonica cultivar-group) genomic D... 40 6.2
29dbj|AK119901.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 6.2
30dbj|AK111954.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 6.2
31dbj|AK111795.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 6.2
32dbj|AK104468.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 6.2
33emb|BX649264.4| Zebrafish DNA sequence from clone CH211-260K9 in... 40 6.2
34gb|DQ229227.1| Phytophthora ramorum elicitin-like protein RAM2E ... 40 6.2
35gb|DQ229225.1| Phytophthora ramorum elicitin-like protein RAM2C ... 40 6.2
36gb|DQ229224.1| Phytophthora ramorum elicitin-like protein RAM2B ... 40 6.2
37gb|DQ229223.1| Phytophthora ramorum elicitin-like protein RAM2A ... 40 6.2
38gb|AC133515.3| Mus musculus BAC clone RP23-236E15 from 1, comple... 40 6.2
39gb|AE014295.3| Bifidobacterium longum NCC2705, complete genome 40 6.2 
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score =  206 bits (104), Expect = 5e-50
 Identities = 179/204 (87%)
 Strand = Plus / Plus

                                                                            
Query: 156      gaggttcatgggcgatatgtacttgctgtcgccgtcgacgatgtacttggcgagcagcac 215
                ||||||||| ||||| ||||||||||||||||||||||||||||||||||| | || || 
Sbjct: 28169198 gaggttcatcggcgagatgtacttgctgtcgccgtcgacgatgtacttggccatcaccag 28169257

                                                                            
Query: 216      gttggccttctcgctggggtgatacgggtcccagaagacgtggttctcccggtcgtcgca 275
                ||| |||  |||||||||||| |||||||||||||| |||||| ||| ||||||| ||||
Sbjct: 28169258 gttcgccgcctcgctggggtggtacgggtcccagaacacgtggctcttccggtcgccgca 28169317

                                                                            
Query: 276      catgctggacgtcggcccgcacggcacgatcccggcgtacctgccgccgttgccacagca 335
                |||||| |||| ||||||||||||||| |||||| ||||| | |||||||| || |||||
Sbjct: 28169318 catgctcgacgccggcccgcacggcaccatcccgtcgtacgtcccgccgttcccgcagca 28169377

                                        
Query: 336      cgccacgctggccgtcccgaaccc 359
                ||||| ||| |||||| |||||||
Sbjct: 28169378 cgccatgctcgccgtctcgaaccc 28169401
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>dbj|AP004570.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
             clone:P0625E02
          Length = 153921

 Score =  206 bits (104), Expect = 5e-50
 Identities = 179/204 (87%)
 Strand = Plus / Plus

                                                                         
Query: 156   gaggttcatgggcgatatgtacttgctgtcgccgtcgacgatgtacttggcgagcagcac 215
             ||||||||| ||||| ||||||||||||||||||||||||||||||||||| | || || 
Sbjct: 24743 gaggttcatcggcgagatgtacttgctgtcgccgtcgacgatgtacttggccatcaccag 24802

                                                                         
Query: 216   gttggccttctcgctggggtgatacgggtcccagaagacgtggttctcccggtcgtcgca 275
             ||| |||  |||||||||||| |||||||||||||| |||||| ||| ||||||| ||||
Sbjct: 24803 gttcgccgcctcgctggggtggtacgggtcccagaacacgtggctcttccggtcgccgca 24862

                                                                         
Query: 276   catgctggacgtcggcccgcacggcacgatcccggcgtacctgccgccgttgccacagca 335
             |||||| |||| ||||||||||||||| |||||| ||||| | |||||||| || |||||
Sbjct: 24863 catgctcgacgccggcccgcacggcaccatcccgtcgtacgtcccgccgttcccgcagca 24922

                                     
Query: 336   cgccacgctggccgtcccgaaccc 359
             ||||| ||| |||||| |||||||
Sbjct: 24923 cgccatgctcgccgtctcgaaccc 24946
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>dbj|AP004274.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
              clone:P0450A04
          Length = 162545

 Score =  206 bits (104), Expect = 5e-50
 Identities = 179/204 (87%)
 Strand = Plus / Plus

                                                                          
Query: 156    gaggttcatgggcgatatgtacttgctgtcgccgtcgacgatgtacttggcgagcagcac 215
              ||||||||| ||||| ||||||||||||||||||||||||||||||||||| | || || 
Sbjct: 152494 gaggttcatcggcgagatgtacttgctgtcgccgtcgacgatgtacttggccatcaccag 152553

                                                                          
Query: 216    gttggccttctcgctggggtgatacgggtcccagaagacgtggttctcccggtcgtcgca 275
              ||| |||  |||||||||||| |||||||||||||| |||||| ||| ||||||| ||||
Sbjct: 152554 gttcgccgcctcgctggggtggtacgggtcccagaacacgtggctcttccggtcgccgca 152613

                                                                          
Query: 276    catgctggacgtcggcccgcacggcacgatcccggcgtacctgccgccgttgccacagca 335
              |||||| |||| ||||||||||||||| |||||| ||||| | |||||||| || |||||
Sbjct: 152614 catgctcgacgccggcccgcacggcaccatcccgtcgtacgtcccgccgttcccgcagca 152673

                                      
Query: 336    cgccacgctggccgtcccgaaccc 359
              ||||| ||| |||||| |||||||
Sbjct: 152674 cgccatgctcgccgtctcgaaccc 152697
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>dbj|AK061122.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-207-G04, full
            insert sequence
          Length = 1666

 Score =  206 bits (104), Expect = 5e-50
 Identities = 179/204 (87%)
 Strand = Plus / Minus

                                                                        
Query: 156  gaggttcatgggcgatatgtacttgctgtcgccgtcgacgatgtacttggcgagcagcac 215
            ||||||||| ||||| ||||||||||||||||||||||||||||||||||| | || || 
Sbjct: 1474 gaggttcatcggcgagatgtacttgctgtcgccgtcgacgatgtacttggccatcaccag 1415

                                                                        
Query: 216  gttggccttctcgctggggtgatacgggtcccagaagacgtggttctcccggtcgtcgca 275
            ||| |||  |||||||||||| |||||||||||||| |||||| ||| ||||||| ||||
Sbjct: 1414 gttcgccgcctcgctggggtggtacgggtcccagaacacgtggctcttccggtcgccgca 1355

                                                                        
Query: 276  catgctggacgtcggcccgcacggcacgatcccggcgtacctgccgccgttgccacagca 335
            |||||| |||| ||||||||||||||| |||||| ||||| | |||||||| || |||||
Sbjct: 1354 catgctcgacgccggcccgcacggcaccatcccgtcgtacgtcccgccgttcccgcagca 1295

                                    
Query: 336  cgccacgctggccgtcccgaaccc 359
            ||||| ||| |||||| |||||||
Sbjct: 1294 cgccatgctcgccgtctcgaaccc 1271
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
               sequence
          Length = 43261740

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                         
Query: 319     ccgccgttgccacagcacgccacgct 344
               ||||||||||||| ||||||||||||
Sbjct: 5780656 ccgccgttgccaccgcacgccacgct 5780681
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>dbj|AP001551.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0451C06
          Length = 151773

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                        
Query: 319    ccgccgttgccacagcacgccacgct 344
              ||||||||||||| ||||||||||||
Sbjct: 105358 ccgccgttgccaccgcacgccacgct 105383
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>ref|XM_730364.1| Plasmodium chabaudi chabaudi hypothetical protein (PC000041.05.0)
           partial mRNA
          Length = 378

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 29  acatagttcatacatcaaatatgtc 53
           ||||| |||||||||||||||||||
Sbjct: 307 acatatttcatacatcaaatatgtc 331
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>gb|AF004835.1|AF004835 Brevibacillus brevis tyrocidine biosynthesis operon, tyrocidine
             synthetase 1 (tycA), tyrocidine synthetase 2 (tycB),
             tyrocidine synthetase 3 (tycC), putative ABC-transporter
             TycD (tycD), putative ABC-transporter TycE (tycE) and
             putative thioesterase GrsT homolog (tycF) genes, complete
             cds
          Length = 40897

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 199   tacttggcgagcagcacgttg 219
             |||||||||||||||||||||
Sbjct: 31511 tacttggcgagcagcacgttg 31491
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>ref|XM_470581.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1377

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 302 cgatcccggcgtacctgccgccgt 325
           |||| |||||||||||||||||||
Sbjct: 616 cgatgccggcgtacctgccgccgt 593
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>ref|XM_507434.1| PREDICTED Oryza sativa (japonica cultivar-group), P0576F08.10 mRNA
          Length = 1378

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 151 ttcctgaggttcatgggcga 170
           ||||||||||||||||||||
Sbjct: 897 ttcctgaggttcatgggcga 916
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>ref|XM_463983.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1312

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 151 ttcctgaggttcatgggcga 170
           ||||||||||||||||||||
Sbjct: 824 ttcctgaggttcatgggcga 843
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>ref|XM_506704.2| PREDICTED Oryza sativa (japonica cultivar-group), P0576F08.10 mRNA
          Length = 1338

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 151 ttcctgaggttcatgggcga 170
           ||||||||||||||||||||
Sbjct: 824 ttcctgaggttcatgggcga 843
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>gb|AE000516.2| Mycobacterium tuberculosis CDC1551, complete genome
          Length = 4403837

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 285     cgtcggcccgcacggcacgatccc 308
               |||||||||||||||| |||||||
Sbjct: 2496875 cgtcggcccgcacggcccgatccc 2496852
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>gb|BC056807.1| Danio rerio zgc:63724, mRNA (cDNA clone MGC:63724 IMAGE:2639232),
            complete cds
          Length = 1966

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 154  ctgaggttcatgggcgatat 173
            ||||||||||||||||||||
Sbjct: 1183 ctgaggttcatgggcgatat 1164
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 302     cgatcccggcgtacctgccgccgt 325
               |||| |||||||||||||||||||
Sbjct: 4908559 cgatgccggcgtacctgccgccgt 4908536
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>gb|AY338236.1| Oryza sativa (japonica cultivar-group) putative aminotransferase
           ALD1 (ALD1) mRNA, complete cds
          Length = 1323

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 302 cgatcccggcgtacctgccgccgt 325
           |||| |||||||||||||||||||
Sbjct: 562 cgatgccggcgtacctgccgccgt 539
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>gb|AC105731.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone
             OSJNBa0064E16, complete sequence
          Length = 159092

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 302   cgatcccggcgtacctgccgccgt 325
             |||| |||||||||||||||||||
Sbjct: 86988 cgatgccggcgtacctgccgccgt 87011
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>gb|AC116713.8| Mus musculus chromosome 9, clone RP23-118M23, complete sequence
          Length = 275731

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 129    ctctgtctagagcttgaaga 148
              ||||||||||||||||||||
Sbjct: 119026 ctctgtctagagcttgaaga 119007
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>gb|AC164556.2| Mus musculus BAC clone RP23-334L9 from chromosome 12, complete sequence
          Length = 182308

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 41    catcaaatatgtccccagat 60
             ||||||||||||||||||||
Sbjct: 54456 catcaaatatgtccccagat 54437
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>emb|BX842579.1| Mycobacterium tuberculosis H37Rv complete genome; segment 8/13
          Length = 348247

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 285   cgtcggcccgcacggcacgatccc 308
             |||||||||||||||| |||||||
Sbjct: 74761 cgtcggcccgcacggcccgatccc 74738
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>emb|BX248341.1| Mycobacterium bovis subsp. bovis AF2122/97 complete genome; segment 8/14
          Length = 306050

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 285    cgtcggcccgcacggcacgatccc 308
              |||||||||||||||| |||||||
Sbjct: 273747 cgtcggcccgcacggcccgatccc 273724
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>gb|AF254925.1| Streptomyces maritimus enterocin biosynthetic gene cluster, complete
             sequence
          Length = 22511

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 294   gcacggcacgatcccggcgt 313
             ||||||||||||||||||||
Sbjct: 17439 gcacggcacgatcccggcgt 17458
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>gb|AF432227.1| Myxococcus xanthus putative transcription factor and putative
            glutaconate CoA-transferase subunit A genes, complete cds
          Length = 1914

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 376  gcgatgagctccatcaccag 395
            ||||||||||||||||||||
Sbjct: 1241 gcgatgagctccatcaccag 1222
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>gb|AF220003.1| Rhodospirillum centenum (Rhodocista centenaria) polar flagellar
           motor switch protein FpiN (fpiN) and polar flagellar
           motor protein MopA (mopA) genes, complete cds
          Length = 1431

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 428 ccggcagcccgccggcgttgagctcgat 455
           ||||||||||||||||| || |||||||
Sbjct: 85  ccggcagcccgccggcgatgcgctcgat 58
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>ref|NM_200618.1| Danio rerio zgc:63724 (zgc:63724), mRNA
          Length = 1966

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 154  ctgaggttcatgggcgatat 173
            ||||||||||||||||||||
Sbjct: 1183 ctgaggttcatgggcgatat 1164
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
               sequence
          Length = 36192742

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 302     cgatcccggcgtacctgccgccgt 325
               |||| |||||||||||||||||||
Sbjct: 4907774 cgatgccggcgtacctgccgccgt 4907751
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
               sequence
          Length = 35954743

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 151     ttcctgaggttcatgggcga 170
               ||||||||||||||||||||
Sbjct: 1481753 ttcctgaggttcatgggcga 1481734
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>dbj|AP004886.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0576F08
          Length = 135314

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 151   ttcctgaggttcatgggcga 170
             ||||||||||||||||||||
Sbjct: 45174 ttcctgaggttcatgggcga 45155
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>dbj|AK119901.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-181-D02, full
           insert sequence
          Length = 1359

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 151 ttcctgaggttcatgggcga 170
           ||||||||||||||||||||
Sbjct: 824 ttcctgaggttcatgggcga 843
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>dbj|AK111954.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-028-D05, full
           insert sequence
          Length = 937

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 151 ttcctgaggttcatgggcga 170
           ||||||||||||||||||||
Sbjct: 449 ttcctgaggttcatgggcga 468
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>dbj|AK111795.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023105K22, full
           insert sequence
          Length = 1378

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 151 ttcctgaggttcatgggcga 170
           ||||||||||||||||||||
Sbjct: 897 ttcctgaggttcatgggcga 916
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>dbj|AK104468.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-301-D04, full
           insert sequence
          Length = 1312

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 151 ttcctgaggttcatgggcga 170
           ||||||||||||||||||||
Sbjct: 824 ttcctgaggttcatgggcga 843
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>emb|BX649264.4| Zebrafish DNA sequence from clone CH211-260K9 in linkage group 20,
             complete sequence
          Length = 194320

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 154   ctgaggttcatgggcgatat 173
             ||||||||||||||||||||
Sbjct: 76594 ctgaggttcatgggcgatat 76575
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>gb|DQ229227.1| Phytophthora ramorum elicitin-like protein RAM2E gene, partial cds
          Length = 420

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 389 tcaccaggtcgtacacgttg 408
           ||||||||||||||||||||
Sbjct: 233 tcaccaggtcgtacacgttg 252
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>gb|DQ229225.1| Phytophthora ramorum elicitin-like protein RAM2C gene, complete cds
          Length = 576

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 389 tcaccaggtcgtacacgttg 408
           ||||||||||||||||||||
Sbjct: 325 tcaccaggtcgtacacgttg 306
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>gb|DQ229224.1| Phytophthora ramorum elicitin-like protein RAM2B gene, complete cds
          Length = 576

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 389 tcaccaggtcgtacacgttg 408
           ||||||||||||||||||||
Sbjct: 325 tcaccaggtcgtacacgttg 306
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>gb|DQ229223.1| Phytophthora ramorum elicitin-like protein RAM2A gene, complete cds
          Length = 576

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 389 tcaccaggtcgtacacgttg 408
           ||||||||||||||||||||
Sbjct: 325 tcaccaggtcgtacacgttg 306
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>gb|AC133515.3| Mus musculus BAC clone RP23-236E15 from 1, complete sequence
          Length = 175639

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 207    gagcagcacgttggccttct 226
              ||||||||||||||||||||
Sbjct: 107234 gagcagcacgttggccttct 107215
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>gb|AE014295.3| Bifidobacterium longum NCC2705, complete genome
          Length = 2256640

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 183    gtcgccgtcgacgatgtact 202
              ||||||||||||||||||||
Sbjct: 459477 gtcgccgtcgacgatgtact 459458


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,933,408
Number of Sequences: 3902068
Number of extensions: 2933408
Number of successful extensions: 51206
Number of sequences better than 10.0: 40
Number of HSP's better than 10.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 50906
Number of HSP's gapped (non-prelim): 300
length of query: 459
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 437
effective length of database: 17,147,199,772
effective search space: 7493326300364
effective search space used: 7493326300364
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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