Clone Name | rbart15d09 |
---|---|
Clone Library Name | barley_pub |
>gb|AC002990.1|HUAC002990 Human Chromosome 16 BAC clone CIT987SK-A-1000D7, complete sequence Length = 106760 Score = 54.0 bits (27), Expect = 4e-04 Identities = 30/31 (96%) Strand = Plus / Minus Query: 113 aaaatttagtttgaaataaaggagaaaagaa 143 |||||||||||| |||||||||||||||||| Sbjct: 64180 aaaatttagtttaaaataaaggagaaaagaa 64150
>gb|AC073636.4| Homo sapiens BAC clone RP11-279N12 from 2, complete sequence Length = 151018 Score = 48.1 bits (24), Expect = 0.022 Identities = 27/28 (96%) Strand = Plus / Minus Query: 75 gattacaacacaaatgaatgaaatgaat 102 ||||||| |||||||||||||||||||| Sbjct: 38760 gattacagcacaaatgaatgaaatgaat 38733
>emb|AJ606075.1| Gossypium hirsutum mRNA for peroxidase (pox gene), strain Xuzhou 142 Length = 1205 Score = 46.1 bits (23), Expect = 0.086 Identities = 23/23 (100%) Strand = Plus / Minus Query: 275 atatttcccatcttcaccattgc 297 ||||||||||||||||||||||| Sbjct: 939 atatttcccatcttcaccattgc 917
>gb|AC005034.2| Homo sapiens BAC clone RP11-342K6 from 2, complete sequence Length = 198587 Score = 46.1 bits (23), Expect = 0.086 Identities = 23/23 (100%) Strand = Plus / Minus Query: 137 aaaagaagaccggaaggcacatt 159 ||||||||||||||||||||||| Sbjct: 29448 aaaagaagaccggaaggcacatt 29426
>ref|XM_306325.2| Anopheles gambiae str. PEST ENSANGP00000015437 (ENSANGG00000012948), partial mRNA Length = 789 Score = 44.1 bits (22), Expect = 0.34 Identities = 22/22 (100%) Strand = Plus / Plus Query: 169 atgaactgaacaccctctgcca 190 |||||||||||||||||||||| Sbjct: 116 atgaactgaacaccctctgcca 137
>gb|AC005510.3|AC005510 Homo sapiens chromosome 4 clone B368A9 map 4q25, complete sequence Length = 168468 Score = 44.1 bits (22), Expect = 0.34 Identities = 25/26 (96%) Strand = Plus / Plus Query: 19 attcatcaatctcagtataaagtatt 44 |||| ||||||||||||||||||||| Sbjct: 29496 attcctcaatctcagtataaagtatt 29521
>ref|NM_126037.3| Arabidopsis thaliana peroxidase AT5G66390 mRNA, complete cds Length = 1213 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 274 gatatttcccatcttcaccat 294 ||||||||||||||||||||| Sbjct: 1000 gatatttcccatcttcaccat 980
>gb|AY616754.1| Homo sapiens biliverdin reductase A (BLVRA) gene, complete cds Length = 52622 Score = 42.1 bits (21), Expect = 1.3 Identities = 24/25 (96%) Strand = Plus / Minus Query: 77 ttacaacacaaatgaatgaaatgaa 101 |||||||| |||||||||||||||| Sbjct: 43566 ttacaacagaaatgaatgaaatgaa 43542
>gb|AC122161.26| Medicago truncatula clone mth2-11l3, complete sequence Length = 118625 Score = 42.1 bits (21), Expect = 1.3 Identities = 24/25 (96%) Strand = Plus / Plus Query: 116 atttagtttgaaataaaggagaaaa 140 |||||| |||||||||||||||||| Sbjct: 37250 atttagattgaaataaaggagaaaa 37274
>gb|AC158209.13| Medicago truncatula clone mth2-154h5, complete sequence Length = 93864 Score = 42.1 bits (21), Expect = 1.3 Identities = 24/25 (96%) Strand = Plus / Minus Query: 78 tacaacacaaatgaatgaaatgaat 102 ||||||||||| ||||||||||||| Sbjct: 1581 tacaacacaaaggaatgaaatgaat 1557
>gb|AC122171.21| Medicago truncatula clone mth2-23b18, complete sequence Length = 125865 Score = 42.1 bits (21), Expect = 1.3 Identities = 24/25 (96%) Strand = Plus / Minus Query: 116 atttagtttgaaataaaggagaaaa 140 |||||| |||||||||||||||||| Sbjct: 80829 atttagattgaaataaaggagaaaa 80805
>emb|Z70050.1|HSU83C4 Human DNA sequence from clone LL0XNC01-83C4 on chromosome X, complete sequence Length = 39876 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 233 cacatctttctgatctcacct 253 ||||||||||||||||||||| Sbjct: 19463 cacatctttctgatctcacct 19443
>emb|AL392083.17| Human DNA sequence from clone RP11-29A19 on chromosome 10 Contains the 3' end of the gene for double-stranded RNA specific adenosine deaminase (ADAR3) (FLJ30545 FLJ25034 FLJ36975) and three CpG islands, complete sequence Length = 164741 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 85 caaatgaatgaaatgaatcaa 105 ||||||||||||||||||||| Sbjct: 56078 caaatgaatgaaatgaatcaa 56058
>emb|AL121996.15|HSG118G19 Human DNA sequence from clone GS1-118G19 on chromosome 1q25.1-31.1 Contains the 5' end of the gene for hemicentin, complete sequence Length = 87461 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 85 caaatgaatgaaatgaatcaa 105 ||||||||||||||||||||| Sbjct: 86755 caaatgaatgaaatgaatcaa 86735
>gb|BT008314.1| Arabidopsis thaliana At5g66390 gene, complete cds Length = 1011 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 274 gatatttcccatcttcaccat 294 ||||||||||||||||||||| Sbjct: 945 gatatttcccatcttcaccat 925
>gb|AY965679.1| Eptatretus burgeri variable lymphocyte receptor B (VLRB) gene, complete cds Length = 91972 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 85 caaatgaatgaaatgaatcaa 105 ||||||||||||||||||||| Sbjct: 56981 caaatgaatgaaatgaatcaa 57001
>gb|AC103798.2| Homo sapiens chromosome 11, clone RP11-159D8, complete sequence Length = 163680 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 55 gagtacagtggcacaataagg 75 ||||||||||||||||||||| Sbjct: 28320 gagtacagtggcacaataagg 28340
>gb|AC090538.6| Homo sapiens chromosome 11, clone RP5-1079I11, complete sequence Length = 158201 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 55 gagtacagtggcacaataagg 75 ||||||||||||||||||||| Sbjct: 140569 gagtacagtggcacaataagg 140589
>gb|AC023275.3|AC023275 Homo sapiens BAC clone RP11-375L10 from 1, complete sequence Length = 180248 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 85 caaatgaatgaaatgaatcaa 105 ||||||||||||||||||||| Sbjct: 72223 caaatgaatgaaatgaatcaa 72243
>emb|BX832751.1|CNS0A130 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH95ZG01 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1192 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 274 gatatttcccatcttcaccat 294 ||||||||||||||||||||| Sbjct: 991 gatatttcccatcttcaccat 971
>emb|BX832014.1|CNS0A146 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH46ZE05 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1203 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 274 gatatttcccatcttcaccat 294 ||||||||||||||||||||| Sbjct: 991 gatatttcccatcttcaccat 971
>dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome Length = 7036071 Score = 42.1 bits (21), Expect = 1.3 Identities = 27/29 (93%) Strand = Plus / Minus Query: 364 cttcgtctgcagcgacgtcatgagcgccg 392 ||||||||||| ||| ||||||||||||| Sbjct: 6854982 cttcgtctgcatcgaggtcatgagcgccg 6854954
>dbj|AB013389.1| Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone:K1F13 Length = 83511 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 274 gatatttcccatcttcaccat 294 ||||||||||||||||||||| Sbjct: 5045 gatatttcccatcttcaccat 5065
>dbj|AB075953.1| Carios capensis mitochondrial DNA, complete sequence Length = 14418 Score = 42.1 bits (21), Expect = 1.3 Identities = 24/25 (96%) Strand = Plus / Minus Query: 108 agcaaaaaatttagtttgaaataaa 132 ||||||||||| ||||||||||||| Sbjct: 13445 agcaaaaaattaagtttgaaataaa 13421
>gb|AC004939.1|AC004939 Homo sapiens PAC clone RP5-974M14 from 7p22, complete sequence Length = 8717 Score = 42.1 bits (21), Expect = 1.3 Identities = 24/25 (96%) Strand = Plus / Plus Query: 77 ttacaacacaaatgaatgaaatgaa 101 |||||||| |||||||||||||||| Sbjct: 5813 ttacaacagaaatgaatgaaatgaa 5837
>emb|AL845442.7| Mouse DNA sequence from clone RP23-392D9 on chromosome 2, complete sequence Length = 192013 Score = 42.1 bits (21), Expect = 1.3 Identities = 24/25 (96%) Strand = Plus / Plus Query: 116 atttagtttgaaataaaggagaaaa 140 ||||||| ||||||||||||||||| Sbjct: 162099 atttagtatgaaataaaggagaaaa 162123
>gb|AC154046.1| Drosophila melanogaster clone BACR29O22, complete sequence Length = 177480 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 114 aaatttagtttgaaataaag 133 |||||||||||||||||||| Sbjct: 151962 aaatttagtttgaaataaag 151981
>gb|AC158357.4| Mus musculus BAC clone RP23-434L22 from chromosome 8, complete sequence Length = 217671 Score = 40.1 bits (20), Expect = 5.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 75 gattacaacacaaatgaatgaaat 98 ||||| |||||||||||||||||| Sbjct: 119415 gattaaaacacaaatgaatgaaat 119392
>ref|XM_479283.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1035 Score = 40.1 bits (20), Expect = 5.3 Identities = 29/32 (90%) Strand = Plus / Minus Query: 364 cttcgtctgcagcgacgtcatgagcgccgcgt 395 |||||||| ||||||||||| |||||||||| Sbjct: 897 cttcgtctccagcgacgtcagcagcgccgcgt 866
>gb|AC124364.4| Mus musculus BAC clone RP24-538E16 from chromosome 12, complete sequence Length = 177697 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 236 atctttctgatctcaccttt 255 |||||||||||||||||||| Sbjct: 110999 atctttctgatctcaccttt 111018
>gb|AC121988.2| Mus musculus BAC clone RP24-295B16 from 10, complete sequence Length = 154373 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 86 aaatgaatgaaatgaatcaa 105 |||||||||||||||||||| Sbjct: 89056 aaatgaatgaaatgaatcaa 89075
>emb|CR729961.2|CNS0GQ6N Tetraodon nigroviridis full-length cDNA Length = 1129 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 116 atttagtttgaaataaagga 135 |||||||||||||||||||| Sbjct: 1095 atttagtttgaaataaagga 1114
>emb|AL163283.2|HS21C083 Homo sapiens chromosome 21 segment HS21C083 Length = 340000 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 235 catctttctgatctcacctt 254 |||||||||||||||||||| Sbjct: 336967 catctttctgatctcacctt 336986
>gb|AY321476.1| Tribolium castaneum Achaete-Scute complex gene cluster, partial sequence Length = 128073 Score = 40.1 bits (20), Expect = 5.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 109 gcaaaaaatttagtttgaaataaa 132 |||||||||||| ||||||||||| Sbjct: 102995 gcaaaaaatttaatttgaaataaa 102972
>emb|AL589791.4| Human DNA sequence from clone RP11-505P2 on chromosome 13, complete sequence Length = 161474 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 52 attgagtacagtggcacaat 71 |||||||||||||||||||| Sbjct: 68974 attgagtacagtggcacaat 68993
>emb|AL359390.14| Human DNA sequence from clone RP11-139E24 on chromosome 1, complete sequence Length = 83750 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 126 aaataaaggagaaaagaaga 145 |||||||||||||||||||| Sbjct: 21054 aaataaaggagaaaagaaga 21073
>emb|AL139185.9| Human DNA sequence from clone RP11-75E6 on chromosome 13q31.1-31.3, complete sequence Length = 123500 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 52 attgagtacagtggcacaat 71 |||||||||||||||||||| Sbjct: 70096 attgagtacagtggcacaat 70115
>emb|AL050315.11|HS1173K17 Human DNA sequence from clone RP5-1173K17 on chromosome 20 Contains part of the PLCB1 gene for phospholipase C beta 1 (phosphoinositide-specific), complete sequence Length = 64810 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 124 tgaaataaaggagaaaagaa 143 |||||||||||||||||||| Sbjct: 664 tgaaataaaggagaaaagaa 645
>emb|AL035251.11|HS705O1 Human DNA sequence from clone RP4-705O1 on chromosome 20q11.2 Contains a novel gene, complete sequence Length = 161888 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 87 aatgaatgaaatgaatcaac 106 |||||||||||||||||||| Sbjct: 151081 aatgaatgaaatgaatcaac 151100
>emb|CR385039.8| Zebrafish DNA sequence from clone DKEYP-31D1 in linkage group 24, complete sequence Length = 166302 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 121 gtttgaaataaaggagaaaa 140 |||||||||||||||||||| Sbjct: 61422 gtttgaaataaaggagaaaa 61403
>emb|AL669928.8| Mouse DNA sequence from clone RP23-76F22 on chromosome 11 Contains a pseudogene similar to part of a member of the tropomyosin gene family, complete sequence Length = 100326 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 111 aaaaaatttagtttgaaata 130 |||||||||||||||||||| Sbjct: 43168 aaaaaatttagtttgaaata 43187
>emb|AL954236.1| Pan troglodytes chromosome 22 clone RP43-054L10 map 22q22.2-q22.3, complete sequence Length = 195913 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 235 catctttctgatctcacctt 254 |||||||||||||||||||| Sbjct: 142308 catctttctgatctcacctt 142327
>gb|AC069405.6| Drosophila melanogaster 3L BAC RP98-17J20 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 167638 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 114 aaatttagtttgaaataaag 133 |||||||||||||||||||| Sbjct: 79794 aaatttagtttgaaataaag 79775
>gb|AF043945.2|AF043945 Homo sapiens chromosome 21 clone PAC 39C17 map 21q22.3, complete sequence Length = 109865 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 235 catctttctgatctcacctt 254 |||||||||||||||||||| Sbjct: 59296 catctttctgatctcacctt 59315
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 40.1 bits (20), Expect = 5.3 Identities = 29/32 (90%) Strand = Plus / Minus Query: 364 cttcgtctgcagcgacgtcatgagcgccgcgt 395 |||||||| ||||||||||| |||||||||| Sbjct: 26562881 cttcgtctccagcgacgtcagcagcgccgcgt 26562850
>emb|BX831693.1|CNS0A12M Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH24ZD02 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1117 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 275 atatttcccatcttcaccat 294 |||||||||||||||||||| Sbjct: 977 atatttcccatcttcaccat 958
>dbj|AP005292.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1340_C08 Length = 192167 Score = 40.1 bits (20), Expect = 5.3 Identities = 29/32 (90%) Strand = Plus / Minus Query: 364 cttcgtctgcagcgacgtcatgagcgccgcgt 395 |||||||| ||||||||||| |||||||||| Sbjct: 108152 cttcgtctccagcgacgtcagcagcgccgcgt 108121
>dbj|AK110555.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-168-C06, full insert sequence Length = 1304 Score = 40.1 bits (20), Expect = 5.3 Identities = 29/32 (90%) Strand = Plus / Minus Query: 364 cttcgtctgcagcgacgtcatgagcgccgcgt 395 |||||||| ||||||||||| |||||||||| Sbjct: 970 cttcgtctccagcgacgtcagcagcgccgcgt 939
>tpe|BN000637.1| TPA: TPA_inf: Oryza sativa (japonica cultivar-group) prx108 gene for class III peroxidase 108 precursor, exon 1 Length = 1035 Score = 40.1 bits (20), Expect = 5.3 Identities = 29/32 (90%) Strand = Plus / Minus Query: 364 cttcgtctgcagcgacgtcatgagcgccgcgt 395 |||||||| ||||||||||| |||||||||| Sbjct: 897 cttcgtctccagcgacgtcagcagcgccgcgt 866
>gb|AE003537.3| Drosophila melanogaster chromosome 3L, section 48 of 83 of the complete sequence Length = 282116 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 114 aaatttagtttgaaataaag 133 |||||||||||||||||||| Sbjct: 275506 aaatttagtttgaaataaag 275487 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,175,572 Number of Sequences: 3902068 Number of extensions: 4175572 Number of successful extensions: 109332 Number of sequences better than 10.0: 50 Number of HSP's better than 10.0 without gapping: 50 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 109185 Number of HSP's gapped (non-prelim): 147 length of query: 395 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 373 effective length of database: 17,147,199,772 effective search space: 6395905514956 effective search space used: 6395905514956 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)