ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart15d07
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_474469.1| Oryza sativa (japonica cultivar-group), predic... 119 8e-24
2emb|AL606656.3|OSJN00099 Oryza sativa genomic DNA, chromosome 4,... 119 8e-24
3dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 119 8e-24
4dbj|AB125306.1| Oryza sativa (japonica cultivar-group) SAPK5 mRN... 119 8e-24
5dbj|AK100269.1| Oryza sativa (japonica cultivar-group) cDNA clon... 119 8e-24
6emb|AL732342.3| Oryza sativa genomic DNA, chromosome 4, BAC clon... 119 8e-24
7gb|AY106594.1| Zea mays PCO129034 mRNA sequence 105 1e-19
8gb|AY105632.1| Zea mays PCO096414 mRNA sequence 56 1e-04
9gb|CP000002.2| Bacillus licheniformis ATCC 14580, complete genome 46 0.10
10gb|AE017333.1| Bacillus licheniformis DSM 13, complete genome 46 0.10
11gb|AC112210.2| Homo sapiens chromosome 3 clone RP11-221D23, comp... 46 0.10
12gb|AC104851.2| Homo sapiens chromosome 3 clone RP11-475N4, compl... 46 0.10
13gb|AC094784.13| Rattus norvegicus 11 BAC CH230-4O6 (Children's H... 44 0.40
14emb|CR925737.7| Zebrafish DNA sequence from clone DKEY-263O8 in ... 42 1.6
15emb|CR339047.8| Zebrafish DNA sequence from clone CH211-12K8 in ... 42 1.6
16emb|CR936370.6| Zebrafish DNA sequence from clone CH211-237H13 i... 42 1.6
17emb|BX936425.7| Zebrafish DNA sequence from clone CH211-39L24 in... 42 1.6
18emb|BX640465.7| Zebrafish DNA sequence from clone CH211-198B21 i... 42 1.6
19emb|AL365503.10| Human DNA sequence from clone RP11-409K15 on ch... 42 1.6
20emb|BX510946.18| Zebrafish DNA sequence from clone CH211-9F9 in ... 42 1.6
21emb|CR847783.6| Zebrafish DNA sequence from clone DKEYP-2C8 in l... 42 1.6
22emb|BX957299.8| Zebrafish DNA sequence from clone DKEY-179E8 in ... 42 1.6
23emb|CR762498.10| Zebrafish DNA sequence from clone DKEY-4J1 in l... 42 1.6
24emb|BX842685.6| Zebrafish DNA sequence from clone DKEY-28C10 in ... 42 1.6
25emb|BX322663.8| Zebrafish DNA sequence from clone CH211-224D23 i... 42 1.6
26ref|NM_001024440.1| Danio rerio zgc:110417 (zgc:110417), mRNA 42 1.6
27gb|BC095251.1| Danio rerio zgc:110417, mRNA (cDNA clone MGC:1104... 42 1.6
28gb|BC076486.1| Danio rerio zgc:110417, mRNA (cDNA clone IMAGE:70... 42 1.6
29gb|AY028464.1| Flavobacterium johnsoniae beta-lactamase JOHN-1 (... 42 1.6
30gb|AC126475.5| Homo sapiens 3 BAC RP11-356O23 (Roswell Park Canc... 42 1.6
31gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome 42 1.6
32gb|AC147873.3| Monodelphis domestica clone VMRC6-582D4, complete... 42 1.6
33emb|CR759797.14| Zebrafish DNA sequence from clone DKEY-87K14 in... 42 1.6
34emb|AL732386.13| Zebrafish DNA sequence from clone XX-35D8 in li... 42 1.6
35emb|AL732398.9| Zebrafish DNA sequence from clone XX-36G15 in li... 42 1.6
36ref|NM_001038693.1| Gallus gallus phosphoglucomutase 1 (PGM1), mRNA 42 1.6
37gb|AF538281.1| Gallus gallus phosphoglucomutase 1 mRNA, complete... 42 1.6
38gb|DP000021.1| Monodelphis domestica target 1 genomic scaffold 42 1.6
39gb|AC112139.31| Mus musculus strain C57BL/6J clone rp23-170m6 ma... 40 6.2
40gb|CP000097.1| Synechococcus sp. CC9902, complete genome 40 6.2
41ref|XM_466688.1| Oryza sativa (japonica cultivar-group), mRNA 40 6.2
42gb|CP000152.1| Burkholderia sp. 383 chromosome 2, complete sequence 40 6.2
43gb|AC161574.8| Mus musculus chromosome 1, clone RP23-352D14, com... 40 6.2
44gb|AE001274.2| Leishmania major strain Friedlin chromosome 1, co... 40 6.2
45gb|AC137993.2| Oryza sativa (japonica cultivar-group) chromosome... 40 6.2
46gb|AY341443.1| Phaseolus vulgaris cultivar Sprite BAC 78L17, par... 40 6.2
47gb|AC127339.3| Mus musculus BAC clone RP23-180G16 from chromosom... 40 6.2
48gb|AC148980.6| Mus musculus BAC clone RP23-230C16 from chromosom... 40 6.2
49gb|AC132610.3| Mus musculus BAC clone RP23-374N15 from chromosom... 40 6.2
50gb|AC144731.15| Medicago truncatula clone mth2-5g18, complete se... 40 6.2
51emb|Z83823.1|HS394F12 Human DNA sequence from clone RP3-394F12 o... 40 6.2
52emb|CR936380.6| Zebrafish DNA sequence from clone CH73-122H24 in... 40 6.2
53emb|Y19207.1|HSDNAHB2 Homo sapiens KRTHB2 gene for type II hair ... 40 6.2
54emb|AL731596.3|OSJN00236 Oryza sativa genomic DNA, chromosome 4,... 40 6.2
55emb|CR753899.5| Zebrafish DNA sequence from clone DKEY-267F18 in... 40 6.2
56emb|BX663604.9| Zebrafish DNA sequence from clone CH211-222K9 in... 40 6.2
57gb|AC127352.5| Mus musculus BAC clone RP23-81P4 from chromosome ... 40 6.2
58emb|BX571667.5| Zebrafish DNA sequence from clone DKEY-267K7 in ... 40 6.2
59gb|AC013416.4|AC013416 Homo sapiens BAC clone CTD-2522F11 from 7... 40 6.2
60dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.2
61dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.2
62dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.2
63gb|AC078865.22| Homo sapiens 12 BAC RP3-416H24 (Roswell Park Can... 40 6.2
64gb|AC018462.4| Homo sapiens BAC clone RP11-270B14 from 2, comple... 40 6.2
65dbj|AP005678.3| Oryza sativa (japonica cultivar-group) genomic D... 40 6.2
66dbj|AP005704.2| Oryza sativa (japonica cultivar-group) genomic D... 40 6.2
67dbj|AP005286.3| Oryza sativa (japonica cultivar-group) genomic D... 40 6.2
68dbj|AK110995.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 6.2
69dbj|AK100568.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 6.2
70dbj|AK071689.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 6.2
71dbj|AK068752.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 6.2
72gb|AY325816.1| Zea mays BAC clone Z013I05, complete sequence 40 6.2
73emb|BX323550.13| Zebrafish DNA sequence from clone DKEYP-70F9 in... 40 6.2
74gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 40 6.2
75gb|L19361.1|SOYSPK3 Glycine max protein kinase 3 (SPK-3) mRNA, c... 40 6.2 
>ref|XM_474469.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1113

 Score =  119 bits (60), Expect = 8e-24
 Identities = 93/104 (89%)
 Strand = Plus / Minus

                                                                       
Query: 320 cgtcgccggtgccccagccgtaccctgtcaccggcttgtcgggcttgggcaccgtctgcg 379
           ||||| |||||||||||||||| || |  || ||||||||||||||||| || |||||||
Sbjct: 997 cgtcgtcggtgccccagccgtagccagagacgggcttgtcgggcttggggacggtctgcg 938

                                                       
Query: 380 cctcctgcacgatcttcatgatctcctccacgctctgcgccgag 423
           |||||||||||||| ||||||| |||||||||||||||| ||||
Sbjct: 937 cctcctgcacgatcctcatgatgtcctccacgctctgcggcgag 894
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>emb|AL606656.3|OSJN00099 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0020J19,
            complete sequence
          Length = 123272

 Score =  119 bits (60), Expect = 8e-24
 Identities = 93/104 (89%)
 Strand = Plus / Minus

                                                                        
Query: 320  cgtcgccggtgccccagccgtaccctgtcaccggcttgtcgggcttgggcaccgtctgcg 379
            ||||| |||||||||||||||| || |  || ||||||||||||||||| || |||||||
Sbjct: 5666 cgtcgtcggtgccccagccgtagccagagacgggcttgtcgggcttggggacggtctgcg 5607

                                                        
Query: 380  cctcctgcacgatcttcatgatctcctccacgctctgcgccgag 423
            |||||||||||||| ||||||| |||||||||||||||| ||||
Sbjct: 5606 cctcctgcacgatcctcatgatgtcctccacgctctgcggcgag 5563
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score =  119 bits (60), Expect = 8e-24
 Identities = 93/104 (89%)
 Strand = Plus / Minus

                                                                            
Query: 320      cgtcgccggtgccccagccgtaccctgtcaccggcttgtcgggcttgggcaccgtctgcg 379
                ||||| |||||||||||||||| || |  || ||||||||||||||||| || |||||||
Sbjct: 35380863 cgtcgtcggtgccccagccgtagccagagacgggcttgtcgggcttggggacggtctgcg 35380804

                                                            
Query: 380      cctcctgcacgatcttcatgatctcctccacgctctgcgccgag 423
                |||||||||||||| ||||||| |||||||||||||||| ||||
Sbjct: 35380803 cctcctgcacgatcctcatgatgtcctccacgctctgcggcgag 35380760



 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 290      ggttgccgtcgtcctcgtcg 309
                ||||||||||||||||||||
Sbjct: 13981753 ggttgccgtcgtcctcgtcg 13981734



 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 290      ggttgccgtcgtcctcgtcg 309
                ||||||||||||||||||||
Sbjct: 13978836 ggttgccgtcgtcctcgtcg 13978817
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>dbj|AB125306.1| Oryza sativa (japonica cultivar-group) SAPK5 mRNA for
            serine/threonine protein kinase SAPK5, complete cds
          Length = 1604

 Score =  119 bits (60), Expect = 8e-24
 Identities = 93/104 (89%)
 Strand = Plus / Minus

                                                                        
Query: 320  cgtcgccggtgccccagccgtaccctgtcaccggcttgtcgggcttgggcaccgtctgcg 379
            ||||| |||||||||||||||| || |  || ||||||||||||||||| || |||||||
Sbjct: 1130 cgtcgtcggtgccccagccgtagccagagacgggcttgtcgggcttggggacggtctgcg 1071

                                                        
Query: 380  cctcctgcacgatcttcatgatctcctccacgctctgcgccgag 423
            |||||||||||||| ||||||| |||||||||||||||| ||||
Sbjct: 1070 cctcctgcacgatcctcatgatgtcctccacgctctgcggcgag 1027
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>dbj|AK100269.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023065E10, full
            insert sequence
          Length = 1636

 Score =  119 bits (60), Expect = 8e-24
 Identities = 93/104 (89%)
 Strand = Plus / Minus

                                                                        
Query: 320  cgtcgccggtgccccagccgtaccctgtcaccggcttgtcgggcttgggcaccgtctgcg 379
            ||||| |||||||||||||||| || |  || ||||||||||||||||| || |||||||
Sbjct: 1162 cgtcgtcggtgccccagccgtagccagagacgggcttgtcgggcttggggacggtctgcg 1103

                                                        
Query: 380  cctcctgcacgatcttcatgatctcctccacgctctgcgccgag 423
            |||||||||||||| ||||||| |||||||||||||||| ||||
Sbjct: 1102 cctcctgcacgatcctcatgatgtcctccacgctctgcggcgag 1059
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>emb|AL732342.3| Oryza sativa genomic DNA, chromosome 4, BAC clone: B0518A01, complete
             sequence
          Length = 32686

 Score =  119 bits (60), Expect = 8e-24
 Identities = 93/104 (89%)
 Strand = Plus / Minus

                                                                         
Query: 320   cgtcgccggtgccccagccgtaccctgtcaccggcttgtcgggcttgggcaccgtctgcg 379
             ||||| |||||||||||||||| || |  || ||||||||||||||||| || |||||||
Sbjct: 12609 cgtcgtcggtgccccagccgtagccagagacgggcttgtcgggcttggggacggtctgcg 12550

                                                         
Query: 380   cctcctgcacgatcttcatgatctcctccacgctctgcgccgag 423
             |||||||||||||| ||||||| |||||||||||||||| ||||
Sbjct: 12549 cctcctgcacgatcctcatgatgtcctccacgctctgcggcgag 12506
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>gb|AY106594.1| Zea mays PCO129034 mRNA sequence
          Length = 662

 Score =  105 bits (53), Expect = 1e-19
 Identities = 62/65 (95%)
 Strand = Plus / Minus

                                                                       
Query: 361 ggcttgggcaccgtctgcgcctcctgcacgatcttcatgatctcctccacgctctgcgcc 420
           ||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||| |
Sbjct: 423 ggcttgggcaccgtctgcgcctcctgcacgatcctcaagatctcctccacgctctgcgac 364

                
Query: 421 gagta 425
           |||||
Sbjct: 363 gagta 359
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>gb|AY105632.1| Zea mays PCO096414 mRNA sequence
          Length = 600

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 37/40 (92%)
 Strand = Plus / Minus

                                                   
Query: 372 cgtctgcgcctcctgcacgatcttcatgatctcctccacg 411
           |||| |||||| || |||||||||||||||||||||||||
Sbjct: 382 cgtccgcgccttctccacgatcttcatgatctcctccacg 343
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>gb|CP000002.2| Bacillus licheniformis ATCC 14580, complete genome
          Length = 4222334

 Score = 46.1 bits (23), Expect = 0.10
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                      
Query: 24      caaaaaaggggtttgagcaaaaa 46
               |||||||||||||||||||||||
Sbjct: 1466617 caaaaaaggggtttgagcaaaaa 1466595
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>gb|AE017333.1| Bacillus licheniformis DSM 13, complete genome
          Length = 4222645

 Score = 46.1 bits (23), Expect = 0.10
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                      
Query: 24      caaaaaaggggtttgagcaaaaa 46
               |||||||||||||||||||||||
Sbjct: 1467478 caaaaaaggggtttgagcaaaaa 1467456
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>gb|AC112210.2| Homo sapiens chromosome 3 clone RP11-221D23, complete sequence
          Length = 146699

 Score = 46.1 bits (23), Expect = 0.10
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                    
Query: 67    tttgttacaattgacaaaaagta 89
             |||||||||||||||||||||||
Sbjct: 73101 tttgttacaattgacaaaaagta 73079
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>gb|AC104851.2| Homo sapiens chromosome 3 clone RP11-475N4, complete sequence
          Length = 160039

 Score = 46.1 bits (23), Expect = 0.10
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                   
Query: 67   tttgttacaattgacaaaaagta 89
            |||||||||||||||||||||||
Sbjct: 6095 tttgttacaattgacaaaaagta 6117
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>gb|AC094784.13| Rattus norvegicus 11 BAC CH230-4O6 (Children's Hospital Oakland Research
              Institute) complete sequence
          Length = 228501

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                        
Query: 73     acaattgacaaaaagtaaaaattcaa 98
              ||||||| ||||||||||||||||||
Sbjct: 164759 acaattgccaaaaagtaaaaattcaa 164784
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>emb|CR925737.7| Zebrafish DNA sequence from clone DKEY-263O8 in linkage group 10,
             complete sequence
          Length = 176107

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 100   cttaacagataattaattaac 120
             |||||||||||||||||||||
Sbjct: 89131 cttaacagataattaattaac 89111
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>emb|CR339047.8| Zebrafish DNA sequence from clone CH211-12K8 in linkage group 11,
              complete sequence
          Length = 137403

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 100    cttaacagataattaattaac 120
              |||||||||||||||||||||
Sbjct: 132795 cttaacagataattaattaac 132815
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>emb|CR936370.6| Zebrafish DNA sequence from clone CH211-237H13 in linkage group 8,
             complete sequence
          Length = 114220

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 100   cttaacagataattaattaac 120
             |||||||||||||||||||||
Sbjct: 26520 cttaacagataattaattaac 26540
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>emb|BX936425.7| Zebrafish DNA sequence from clone CH211-39L24 in linkage group 17,
              complete sequence
          Length = 173763

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 100    cttaacagataattaattaac 120
              |||||||||||||||||||||
Sbjct: 121197 cttaacagataattaattaac 121177
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>emb|BX640465.7| Zebrafish DNA sequence from clone CH211-198B21 in linkage group 9,
            complete sequence
          Length = 214459

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 100  cttaacagataattaattaac 120
            |||||||||||||||||||||
Sbjct: 5771 cttaacagataattaattaac 5791
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>emb|AL365503.10| Human DNA sequence from clone RP11-409K15 on chromosome 6, complete
             sequence
          Length = 105657

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 72    tacaattgacaaaaagtaaaa 92
             |||||||||||||||||||||
Sbjct: 26938 tacaattgacaaaaagtaaaa 26958
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>emb|BX510946.18| Zebrafish DNA sequence from clone CH211-9F9 in linkage group 13,
             complete sequence
          Length = 103700

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 75    aattgacaaaaagtaaaaattcaat 99
             |||||||||| ||||||||||||||
Sbjct: 37925 aattgacaaatagtaaaaattcaat 37949
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>emb|CR847783.6| Zebrafish DNA sequence from clone DKEYP-2C8 in linkage group 5,
             complete sequence
          Length = 184144

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 100   cttaacagataattaattaac 120
             |||||||||||||||||||||
Sbjct: 94642 cttaacagataattaattaac 94662
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>emb|BX957299.8| Zebrafish DNA sequence from clone DKEY-179E8 in linkage group 19,
             complete sequence
          Length = 168017

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 100   cttaacagataattaattaac 120
             |||||||||||||||||||||
Sbjct: 58822 cttaacagataattaattaac 58802
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>emb|CR762498.10| Zebrafish DNA sequence from clone DKEY-4J1 in linkage group 13,
             complete sequence
          Length = 169361

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 75    aattgacaaaaagtaaaaattcaat 99
             |||||||||| ||||||||||||||
Sbjct: 29425 aattgacaaatagtaaaaattcaat 29449
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>emb|BX842685.6| Zebrafish DNA sequence from clone DKEY-28C10 in linkage group 5,
             complete sequence
          Length = 133388

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 100   cttaacagataattaattaac 120
             |||||||||||||||||||||
Sbjct: 28672 cttaacagataattaattaac 28692
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>emb|BX322663.8| Zebrafish DNA sequence from clone CH211-224D23 in linkage group 3,
              complete sequence
          Length = 145520

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                               
Query: 374    tctgcgcctcctgcacgatcttcatgatctcct 406
              ||||| |||||||| | ||||||||||||||||
Sbjct: 143661 tctgcacctcctgctccatcttcatgatctcct 143629
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>ref|NM_001024440.1| Danio rerio zgc:110417 (zgc:110417), mRNA
          Length = 1169

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                            
Query: 374 tctgcgcctcctgcacgatcttcatgatctcct 406
           ||||| |||||||| | ||||||||||||||||
Sbjct: 332 tctgcacctcctgctccatcttcatgatctcct 300
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>gb|BC095251.1| Danio rerio zgc:110417, mRNA (cDNA clone MGC:110417 IMAGE:7222570),
           complete cds
          Length = 1169

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                            
Query: 374 tctgcgcctcctgcacgatcttcatgatctcct 406
           ||||| |||||||| | ||||||||||||||||
Sbjct: 332 tctgcacctcctgctccatcttcatgatctcct 300
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>gb|BC076486.1| Danio rerio zgc:110417, mRNA (cDNA clone IMAGE:7036806), partial
           cds
          Length = 1140

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                            
Query: 374 tctgcgcctcctgcacgatcttcatgatctcct 406
           ||||| |||||||| | ||||||||||||||||
Sbjct: 313 tctgcacctcctgctccatcttcatgatctcct 281
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>gb|AY028464.1| Flavobacterium johnsoniae beta-lactamase JOHN-1 (blaJOHN-1),
           hypothetical primosomal replication factor Y,
           hypothetical pseudouridine synthase, and hypothetical
           transcription regulator protein genes, complete cds
          Length = 6201

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 380 cctcctgcacgatcttcatga 400
           |||||||||||||||||||||
Sbjct: 753 cctcctgcacgatcttcatga 733
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>gb|AC126475.5| Homo sapiens 3 BAC RP11-356O23 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 115086

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 51    aatgttaattagctaatttgt 71
             |||||||||||||||||||||
Sbjct: 65589 aatgttaattagctaatttgt 65569
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>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome
          Length = 5013479

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 296    cgtcgtcctcgtcggaggcctcgcc 320
              |||||||||||||||| ||||||||
Sbjct: 528594 cgtcgtcctcgtcggacgcctcgcc 528618
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>gb|AC147873.3| Monodelphis domestica clone VMRC6-582D4, complete sequence
          Length = 165359

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 71    ttacaattgacaaaaagtaaa 91
             |||||||||||||||||||||
Sbjct: 94932 ttacaattgacaaaaagtaaa 94912
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>emb|CR759797.14| Zebrafish DNA sequence from clone DKEY-87K14 in linkage group 17,
             complete sequence
          Length = 181261

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 100   cttaacagataattaattaac 120
             |||||||||||||||||||||
Sbjct: 87270 cttaacagataattaattaac 87290
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>emb|AL732386.13| Zebrafish DNA sequence from clone XX-35D8 in linkage group 9, complete
             sequence
          Length = 50895

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 100   cttaacagataattaattaac 120
             |||||||||||||||||||||
Sbjct: 23996 cttaacagataattaattaac 23976
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>emb|AL732398.9| Zebrafish DNA sequence from clone XX-36G15 in linkage group 9, complete
             sequence
          Length = 60823

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 100   cttaacagataattaattaac 120
             |||||||||||||||||||||
Sbjct: 11781 cttaacagataattaattaac 11761
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>ref|NM_001038693.1| Gallus gallus phosphoglucomutase 1 (PGM1), mRNA
          Length = 2303

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 393  cttcatgatctcctccacgctctgc 417
            ||||||||| |||||||||||||||
Sbjct: 1264 cttcatgatgtcctccacgctctgc 1240
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>gb|AF538281.1| Gallus gallus phosphoglucomutase 1 mRNA, complete cds
          Length = 2303

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 393  cttcatgatctcctccacgctctgc 417
            ||||||||| |||||||||||||||
Sbjct: 1264 cttcatgatgtcctccacgctctgc 1240
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>gb|DP000021.1| Monodelphis domestica target 1 genomic scaffold
          Length = 1833844

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 71     ttacaattgacaaaaagtaaa 91
              |||||||||||||||||||||
Sbjct: 924105 ttacaattgacaaaaagtaaa 924085
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>gb|AC112139.31| Mus musculus strain C57BL/6J clone rp23-170m6 map 6, complete sequence
          Length = 203032

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 81     caaaaagtaaaaattcaatc 100
              ||||||||||||||||||||
Sbjct: 171722 caaaaagtaaaaattcaatc 171741
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>gb|CP000097.1| Synechococcus sp. CC9902, complete genome
          Length = 2234828

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 92     aattcaatcttaacagataattaa 115
              ||||||||||| ||||||||||||
Sbjct: 245257 aattcaatctttacagataattaa 245234
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>ref|XM_466688.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1735

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 381 ctcctgcacgatcttcatgatctc 404
           ||||| ||||||||||||||||||
Sbjct: 37  ctcctccacgatcttcatgatctc 14
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>gb|CP000152.1| Burkholderia sp. 383 chromosome 2, complete sequence
          Length = 3587082

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 432    cgcgggcgcggtcaccgccgccgc 455
              ||||| ||||||||||||||||||
Sbjct: 854179 cgcggccgcggtcaccgccgccgc 854156
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>gb|AC161574.8| Mus musculus chromosome 1, clone RP23-352D14, complete sequence
          Length = 187614

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 75     aattgacaaaaagtaaaaat 94
              ||||||||||||||||||||
Sbjct: 141367 aattgacaaaaagtaaaaat 141348
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>gb|AE001274.2| Leishmania major strain Friedlin chromosome 1, complete sequence
          Length = 268984

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 440    cggtcaccgccgccgcggca 459
              ||||||||||||||||||||
Sbjct: 104801 cggtcaccgccgccgcggca 104820
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>gb|AC137993.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone
            OSJNBb0122P24, complete sequence
          Length = 136104

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 437  gcgcggtcaccgccgccgcg 456
            ||||||||||||||||||||
Sbjct: 8455 gcgcggtcaccgccgccgcg 8474
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>gb|AY341443.1| Phaseolus vulgaris cultivar Sprite BAC 78L17, partial sequence
          Length = 106592

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 80    acaaaaagtaaaaattcaat 99
             ||||||||||||||||||||
Sbjct: 62554 acaaaaagtaaaaattcaat 62573
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>gb|AC127339.3| Mus musculus BAC clone RP23-180G16 from chromosome 5, complete sequence
          Length = 225376

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 89    aaaaattcaatcttaacagataat 112
             ||||| ||||||||||||||||||
Sbjct: 30168 aaaaagtcaatcttaacagataat 30191
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>gb|AC148980.6| Mus musculus BAC clone RP23-230C16 from chromosome 7, complete sequence
          Length = 192433

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 79    gacaaaaagtaaaaattcaa 98
             ||||||||||||||||||||
Sbjct: 76999 gacaaaaagtaaaaattcaa 76980
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>gb|AC132610.3| Mus musculus BAC clone RP23-374N15 from chromosome 6, complete sequence
          Length = 195587

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 81    caaaaagtaaaaattcaatc 100
             ||||||||||||||||||||
Sbjct: 13361 caaaaagtaaaaattcaatc 13380
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>gb|AC144731.15| Medicago truncatula clone mth2-5g18, complete sequence
          Length = 115175

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 83    aaaagtaaaaattcaatctt 102
             ||||||||||||||||||||
Sbjct: 60469 aaaagtaaaaattcaatctt 60450
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>emb|Z83823.1|HS394F12 Human DNA sequence from clone RP3-394F12 on chromosome X Contains the
             5' end of the ODZ1 gene for odd odd Oz/ten-m homolog
             1(Drosophila), complete sequence
          Length = 109279

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 76    attgacaaaaagtaaaaattcaat 99
             ||||||| ||||||||||||||||
Sbjct: 71706 attgacacaaagtaaaaattcaat 71683
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>emb|CR936380.6| Zebrafish DNA sequence from clone CH73-122H24 in linkage group 22,
             complete sequence
          Length = 66129

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 93    attcaatcttaacagataattaat 116
             |||||||||||| |||||||||||
Sbjct: 15044 attcaatcttaaaagataattaat 15067
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>emb|Y19207.1|HSDNAHB2 Homo sapiens KRTHB2 gene for type II hair keratin 2, exons 1 to 9
          Length = 14707

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 82   aaaaagtaaaaattcaatcttaac 105
            |||||||||||||||||| |||||
Sbjct: 9414 aaaaagtaaaaattcaattttaac 9391
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>emb|AL731596.3|OSJN00236 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0024J22,
             complete sequence
          Length = 174430

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 290   ggttgccgtcgtcctcgtcg 309
             ||||||||||||||||||||
Sbjct: 95633 ggttgccgtcgtcctcgtcg 95614



 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 290   ggttgccgtcgtcctcgtcg 309
             ||||||||||||||||||||
Sbjct: 92716 ggttgccgtcgtcctcgtcg 92697
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>emb|CR753899.5| Zebrafish DNA sequence from clone DKEY-267F18 in linkage group 5,
              complete sequence
          Length = 205476

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 101    ttaacagataattaattaac 120
              ||||||||||||||||||||
Sbjct: 198469 ttaacagataattaattaac 198450
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>emb|BX663604.9| Zebrafish DNA sequence from clone CH211-222K9 in linkage group 7,
            complete sequence
          Length = 161194

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 91   aaattcaatcttaacagataatta 114
            ||||||||||| ||||||||||||
Sbjct: 7821 aaattcaatctcaacagataatta 7798
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>gb|AC127352.5| Mus musculus BAC clone RP23-81P4 from chromosome 7, complete sequence
          Length = 196031

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 79     gacaaaaagtaaaaattcaa 98
              ||||||||||||||||||||
Sbjct: 182200 gacaaaaagtaaaaattcaa 182219
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>emb|BX571667.5| Zebrafish DNA sequence from clone DKEY-267K7 in linkage group 1, complete
              sequence
          Length = 151582

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 101    ttaacagataattaattaac 120
              ||||||||||||||||||||
Sbjct: 116402 ttaacagataattaattaac 116421
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>gb|AC013416.4|AC013416 Homo sapiens BAC clone CTD-2522F11 from 7, complete sequence
          Length = 117927

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 204   catgccgaagtctccgctgg 223
             ||||||||||||||||||||
Sbjct: 11861 catgccgaagtctccgctgg 11880
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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
               sequence
          Length = 28386948

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 437     gcgcggtcaccgccgccgcg 456
               ||||||||||||||||||||
Sbjct: 7462343 gcgcggtcaccgccgccgcg 7462324
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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 312      ggcctcgccgtcgccggtgc 331
                ||||||||||||||||||||
Sbjct: 10471565 ggcctcgccgtcgccggtgc 10471584
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 381      ctcctgcacgatcttcatgatctc 404
                ||||| ||||||||||||||||||
Sbjct: 24119242 ctcctccacgatcttcatgatctc 24119265
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>gb|AC078865.22| Homo sapiens 12 BAC RP3-416H24 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 69230

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 82    aaaaagtaaaaattcaatcttaac 105
             |||||||||||||||||| |||||
Sbjct: 14683 aaaaagtaaaaattcaattttaac 14660
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>gb|AC018462.4| Homo sapiens BAC clone RP11-270B14 from 2, complete sequence
          Length = 189326

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 22     gacaaaaaaggggtttgagc 41
              ||||||||||||||||||||
Sbjct: 111946 gacaaaaaaggggtttgagc 111927
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>dbj|AP005678.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
             clone:OJ1116_F08
          Length = 133805

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 312   ggcctcgccgtcgccggtgc 331
             ||||||||||||||||||||
Sbjct: 39170 ggcctcgccgtcgccggtgc 39189
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>dbj|AP005704.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
             clone:P0448B03
          Length = 147748

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 312   ggcctcgccgtcgccggtgc 331
             ||||||||||||||||||||
Sbjct: 71944 ggcctcgccgtcgccggtgc 71963
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>dbj|AP005286.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1004_A05
          Length = 174290

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 381   ctcctgcacgatcttcatgatctc 404
             ||||| ||||||||||||||||||
Sbjct: 77983 ctcctccacgatcttcatgatctc 78006
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>dbj|AK110995.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-174-E04, full
           insert sequence
          Length = 1735

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 381 ctcctgcacgatcttcatgatctc 404
           ||||| ||||||||||||||||||
Sbjct: 37  ctcctccacgatcttcatgatctc 14
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>dbj|AK100568.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023104O10, full
            insert sequence
          Length = 4592

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 290  ggttgccgtcgtcctcgtcg 309
            ||||||||||||||||||||
Sbjct: 1903 ggttgccgtcgtcctcgtcg 1922
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>dbj|AK071689.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023112E13, full
           insert sequence
          Length = 1585

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 312 ggcctcgccgtcgccggtgc 331
           ||||||||||||||||||||
Sbjct: 123 ggcctcgccgtcgccggtgc 104
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>dbj|AK068752.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013159C14, full
           insert sequence
          Length = 956

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 290 ggttgccgtcgtcctcgtcg 309
           ||||||||||||||||||||
Sbjct: 797 ggttgccgtcgtcctcgtcg 816
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>gb|AY325816.1| Zea mays BAC clone Z013I05, complete sequence
          Length = 152337

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 306   gtcggaggcctcgccgtcgc 325
             ||||||||||||||||||||
Sbjct: 46924 gtcggaggcctcgccgtcgc 46943
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>emb|BX323550.13| Zebrafish DNA sequence from clone DKEYP-70F9 in linkage group 22,
              complete sequence
          Length = 200031

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 93     attcaatcttaacagataattaat 116
              |||||||||||| |||||||||||
Sbjct: 102925 attcaatcttaaaagataattaat 102902
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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 437     gcgcggtcaccgccgccgcg 456
               ||||||||||||||||||||
Sbjct: 7532429 gcgcggtcaccgccgccgcg 7532410
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>gb|L19361.1|SOYSPK3 Glycine max protein kinase 3 (SPK-3) mRNA, complete cds
          Length = 1425

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 391 atcttcatgatctcctccac 410
           ||||||||||||||||||||
Sbjct: 977 atcttcatgatctcctccac 958


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,847,930
Number of Sequences: 3902068
Number of extensions: 3847930
Number of successful extensions: 109636
Number of sequences better than 10.0: 75
Number of HSP's better than 10.0 without gapping: 76
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 108534
Number of HSP's gapped (non-prelim): 1102
length of query: 460
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 438
effective length of database: 17,147,199,772
effective search space: 7510473500136
effective search space used: 7510473500136
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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