Clone Information

BLAST Search Result

Clone Name	rbart15d05
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	TPT2_BRAOB (P52178) Triose phosphate/phosphate translocator, non...	114	2e-25
2	GPT1_ARATH (Q9M5A9) Glucose-6-phosphate/phosphate translocator 1...	62	8e-10
3	GPT2_ARATH (Q94B38) Glucose-6-phosphate/phosphate translocator 2...	60	3e-09
4	TPT1_BRAOB (P52177) Triose phosphate/phosphate translocator, chl...	50	3e-06
5	TPT_SPIOL (P11869) Triose phosphate/phosphate translocator, chlo...	50	4e-06
6	TPT_PEA (P21727) Triose phosphate/phosphate translocator, chloro...	50	4e-06
7	SL35E_HUMAN (Q96K37) Solute carrier family 35 member E1	50	4e-06
8	TPT_FLAPR (P49131) Triose phosphate/phosphate translocator, chlo...	49	6e-06
9	SL35E_MOUSE (Q8CD26) Solute carrier family 35 member E1	49	6e-06
10	TPT_MAIZE (P49133) Triose phosphate/phosphate translocator, chlo...	49	6e-06
11	TPT_FLATR (P49132) Triose phosphate/phosphate translocator, chlo...	49	1e-05
12	TPT_SOLTU (P29463) Triose phosphate/phosphate translocator, chlo...	45	1e-04
13	CSPG4_HUMAN (Q6UVK1) Chondroitin sulfate proteoglycan 4 precurso...	34	0.24
14	CAFF_RIFPA (P30754) Fibril-forming collagen alpha chain (Fragment)	33	0.32
15	CO7A1_HUMAN (Q02388) Collagen alpha-1(VII) chain precursor (Long...	32	0.71
16	CTTB2_OTOGA (Q2QLG9) Cortactin-binding protein 2 (CortBP2)	32	0.71
17	CO1A1_CHICK (P02457) Collagen alpha-1(I) chain precursor	32	0.71
18	CO1A2_RAT (P02466) Collagen alpha-2(I) chain precursor	32	0.93
19	CO1A2_MOUSE (Q01149) Collagen alpha-2(I) chain precursor	32	0.93
20	VGLC_HHV2G (P03173) Glycoprotein C precursor (Glycoprotein F)	32	0.93
21	CSPG4_RAT (Q00657) Chondroitin sulfate proteoglycan 4 precursor ...	32	1.2
22	PHF1_CLOPA (P29166) Periplasmic [Fe] hydrogenase 1 (EC 1.12.7.2)...	31	1.6
23	CO1A2_RABIT (Q28668) Collagen alpha-2(I) chain precursor (Fragment)	31	1.6
24	CO1A2_BOVIN (P02465) Collagen alpha-2(I) chain precursor	31	1.6
25	VGLC_HHV2H (Q89730) Glycoprotein C precursor	30	2.7
26	VGLC_HHV23 (P06475) Glycoprotein C precursor	30	2.7
27	CELR3_HUMAN (Q9NYQ7) Cadherin EGF LAG seven-pass G-type receptor...	30	3.5
28	CO1A2_CANFA (O46392) Collagen alpha-2(I) chain precursor	30	3.5
29	CELR3_RAT (O88278) Cadherin EGF LAG seven-pass G-type receptor 3...	30	3.5
30	CELR3_MOUSE (Q91ZI0) Cadherin EGF LAG seven-pass G-type receptor...	30	3.5
31	COCA1_HUMAN (Q99715) Collagen alpha-1(XII) chain precursor	30	4.6
32	WRK20_ARATH (Q93WV0) Probable WRKY transcription factor 20 (WRKY...	30	4.6
33	RGS2_MOUSE (O08849) Regulator of G-protein signaling 2 (RGS2)	30	4.6
34	CO1A1_HUMAN (P02452) Collagen alpha-1(I) chain precursor	29	6.0
35	CO1A2_CHICK (P02467) Collagen alpha-2(I) chain precursor (Fragme...	29	6.0
36	CO1A1_CANFA (Q9XSJ7) Collagen alpha-1(I) chain precursor	29	6.0
37	CO1A1_BOVIN (P02453) Collagen alpha-1(I) chain (Fragments)	29	6.0
38	S12A7_MOUSE (Q9WVL3) Solute carrier family 12 member 7 (Electron...	29	6.0
39	COCA1_CHICK (P13944) Collagen alpha-1(XII) chain precursor (Fibr...	29	6.0
40	WIRE_MOUSE (Q6PEV3) WIP-related protein (WASP-interacting protei...	29	6.0
41	WIRE_HUMAN (Q8TF74) WIP-related protein (WASP-interacting protei...	29	6.0
42	CO1A1_RAT (P02454) Collagen alpha-1(I) chain precursor	29	7.8
43	CO1A1_MOUSE (P11087) Collagen alpha-1(I) chain precursor	29	7.8
44	CO1A2_HUMAN (P08123) Collagen alpha-2(I) chain precursor	29	7.8
45	S35B1_HUMAN (P78383) Solute carrier family 35 member B1 (UDP-gal...	29	7.8
46	S35B1_BOVIN (Q8MII5) Solute carrier family 35 member B1 (Endopla...	29	7.8
47	COCA1_BOVIN (P25508) Collagen alpha-1(XII) chain (Fragments)	29	7.8
48	YDB1_SCHPO (Q10354) Hypothetical protein C22E12.01 in chromosome I	29	7.8

>TPT2_BRAOB (P52178) Triose phosphate/phosphate translocator, non-green|
           plastid, chloroplast precursor (CTPT)
          Length = 402

 Score =  114 bits (284), Expect = 2e-25
 Identities = 52/86 (60%), Positives = 67/86 (77%)
 Frame = -1

Query: 493 LNLQELCVRAALAGLCFHGYQKLSYMILARVSPVTHSVANCXXXXXXXXXXVLFFRTPIS 314
           +N+Q++  ++ +A LCFH YQ++SYMILARVSPVTHSV NC          V+FF+TP+S
Sbjct: 313 VNVQQIYTKSLIAALCFHAYQQVSYMILARVSPVTHSVGNCVKRVVVIVSSVIFFKTPVS 372

Query: 313 PVNALGTGAALAGVYLYSRLKKTKPK 236
           PVNA GTG ALAGV+LYSR+K+ KPK
Sbjct: 373 PVNAFGTGIALAGVFLYSRVKRIKPK 398

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>GPT1_ARATH (Q9M5A9) Glucose-6-phosphate/phosphate translocator 1, chloroplast|
           precursor
          Length = 388

 Score = 62.0 bits (149), Expect = 8e-10
 Identities = 28/65 (43%), Positives = 40/65 (61%)
 Frame = -1

Query: 445 FHGYQKLSYMILARVSPVTHSVANCXXXXXXXXXXVLFFRTPISPVNALGTGAALAGVYL 266
           +H Y ++SYM L ++SP+T SV N           ++ FRTP+ PVNALG   A+ G +L
Sbjct: 323 YHLYNQVSYMSLDQISPLTFSVGNTMKRISVIVSSIIIFRTPVQPVNALGAAIAILGTFL 382

Query: 265 YSRLK 251
           YS+ K
Sbjct: 383 YSQAK 387

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>GPT2_ARATH (Q94B38) Glucose-6-phosphate/phosphate translocator 2, chloroplast|
           precursor
          Length = 388

 Score = 60.1 bits (144), Expect = 3e-09
 Identities = 27/66 (40%), Positives = 40/66 (60%)
 Frame = -1

Query: 445 FHGYQKLSYMILARVSPVTHSVANCXXXXXXXXXXVLFFRTPISPVNALGTGAALAGVYL 266
           +H Y ++SYM L ++SP+T S+ N           ++ F TPI PVNALG   A+ G +L
Sbjct: 323 YHLYNQVSYMSLDQISPLTFSIGNTMKRISVIVASIIIFHTPIQPVNALGAAIAIFGTFL 382

Query: 265 YSRLKK 248
           YS+ K+
Sbjct: 383 YSQAKQ 388

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>TPT1_BRAOB (P52177) Triose phosphate/phosphate translocator, chloroplast|
           precursor (cTPT)
          Length = 407

 Score = 50.4 bits (119), Expect = 3e-06
 Identities = 26/68 (38%), Positives = 38/68 (55%)
 Frame = -1

Query: 454 GLCFHGYQKLSYMILARVSPVTHSVANCXXXXXXXXXXVLFFRTPISPVNALGTGAALAG 275
           G+ +H Y +L+   L RV+P+TH+V N           ++ F   IS    +GTG A+AG
Sbjct: 327 GMFYHLYNQLATNTLERVAPLTHAVGNVLKRVFVIGFSIVIFGNKISTQTGIGTGIAIAG 386

Query: 274 VYLYSRLK 251
           V LYS +K
Sbjct: 387 VALYSVIK 394

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>TPT_SPIOL (P11869) Triose phosphate/phosphate translocator, chloroplast|
           precursor (cTPT) (p36) (E29)
          Length = 404

 Score = 49.7 bits (117), Expect = 4e-06
 Identities = 26/68 (38%), Positives = 38/68 (55%)
 Frame = -1

Query: 454 GLCFHGYQKLSYMILARVSPVTHSVANCXXXXXXXXXXVLFFRTPISPVNALGTGAALAG 275
           G+ +H Y +L+   L RV+P+TH+V N           ++ F   IS   A+GT  A+AG
Sbjct: 324 GMFYHLYNQLATNTLERVAPLTHAVGNVLKRVFVIGFSIIAFGNKISTQTAIGTSIAIAG 383

Query: 274 VYLYSRLK 251
           V LYS +K
Sbjct: 384 VALYSLIK 391

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>TPT_PEA (P21727) Triose phosphate/phosphate translocator, chloroplast|
           precursor (cTPT) (p36) (E30)
          Length = 402

 Score = 49.7 bits (117), Expect = 4e-06
 Identities = 25/68 (36%), Positives = 38/68 (55%)
 Frame = -1

Query: 454 GLCFHGYQKLSYMILARVSPVTHSVANCXXXXXXXXXXVLFFRTPISPVNALGTGAALAG 275
           G+ +H Y +++   L RV+P+TH+V N           ++ F   IS    +GTG A+AG
Sbjct: 322 GMFYHLYNQVATNTLERVAPLTHAVGNVLKRVFVIGFSIIIFGNKISTQTGIGTGIAIAG 381

Query: 274 VYLYSRLK 251
           V LYS +K
Sbjct: 382 VALYSFIK 389

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>SL35E_HUMAN (Q96K37) Solute carrier family 35 member E1|
          Length = 266

 Score = 49.7 bits (117), Expect = 4e-06
 Identities = 23/71 (32%), Positives = 39/71 (54%)
 Frame = -1

Query: 463 ALAGLCFHGYQKLSYMILARVSPVTHSVANCXXXXXXXXXXVLFFRTPISPVNALGTGAA 284
           A++G C      +++ IL  VSP+++SVAN           ++  R P++  N LG   A
Sbjct: 122 AVSGFCNFAQNVIAFSILNLVSPLSYSVANATKRIMVITVSLIMLRNPVTSTNVLGMMTA 181

Query: 283 LAGVYLYSRLK 251
           + GV+LY++ K
Sbjct: 182 ILGVFLYNKTK 192

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>TPT_FLAPR (P49131) Triose phosphate/phosphate translocator, chloroplast|
           precursor (cTPT)
          Length = 408

 Score = 49.3 bits (116), Expect = 6e-06
 Identities = 25/68 (36%), Positives = 38/68 (55%)
 Frame = -1

Query: 454 GLCFHGYQKLSYMILARVSPVTHSVANCXXXXXXXXXXVLFFRTPISPVNALGTGAALAG 275
           G+ +H Y +L+   L RV+P+TH+V N           ++ F   IS   A+GT  A+AG
Sbjct: 328 GMFYHLYNQLAINTLERVAPLTHAVGNVLKRVFVIGFSIIVFGNKISTQTAIGTSIAIAG 387

Query: 274 VYLYSRLK 251
           V +YS +K
Sbjct: 388 VAVYSLIK 395

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>SL35E_MOUSE (Q8CD26) Solute carrier family 35 member E1|
          Length = 265

 Score = 49.3 bits (116), Expect = 6e-06
 Identities = 22/71 (30%), Positives = 39/71 (54%)
 Frame = -1

Query: 463 ALAGLCFHGYQKLSYMILARVSPVTHSVANCXXXXXXXXXXVLFFRTPISPVNALGTGAA 284
           A++G C      +++ IL  +SP+++SVAN           ++  R P++  N LG   A
Sbjct: 122 AVSGFCNFAQNVIAFSILNLISPLSYSVANATKRIMVITVSLIMLRNPVTSTNVLGMMTA 181

Query: 283 LAGVYLYSRLK 251
           + GV+LY++ K
Sbjct: 182 ILGVFLYNKTK 192

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>TPT_MAIZE (P49133) Triose phosphate/phosphate translocator, chloroplast|
           precursor (cTPT)
          Length = 409

 Score = 49.3 bits (116), Expect = 6e-06
 Identities = 25/70 (35%), Positives = 38/70 (54%)
 Frame = -1

Query: 460 LAGLCFHGYQKLSYMILARVSPVTHSVANCXXXXXXXXXXVLFFRTPISPVNALGTGAAL 281
           L GL +H Y +++   L RV+P+TH+V N           ++ F   IS    +GT  A+
Sbjct: 328 LVGLFYHLYNQIATNTLERVAPLTHAVGNVLKRVFVIGFSIIVFGNKISTQTGIGTSIAI 387

Query: 280 AGVYLYSRLK 251
           AGV +YS +K
Sbjct: 388 AGVAMYSYIK 397

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>TPT_FLATR (P49132) Triose phosphate/phosphate translocator, chloroplast|
           precursor (cTPT)
          Length = 407

 Score = 48.5 bits (114), Expect = 1e-05
 Identities = 24/68 (35%), Positives = 38/68 (55%)
 Frame = -1

Query: 454 GLCFHGYQKLSYMILARVSPVTHSVANCXXXXXXXXXXVLFFRTPISPVNALGTGAALAG 275
           G+ +H Y +++   L RV+P+TH+V N           ++ F   IS   A+GT  A+AG
Sbjct: 327 GMFYHLYNQIATNTLERVAPLTHAVGNVLKRVFVIGFSIIVFGNKISTQTAIGTSIAIAG 386

Query: 274 VYLYSRLK 251
           V +YS +K
Sbjct: 387 VAIYSLIK 394

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>TPT_SOLTU (P29463) Triose phosphate/phosphate translocator, chloroplast|
           precursor (cTPT) (E29)
          Length = 414

 Score = 45.1 bits (105), Expect = 1e-04
 Identities = 23/68 (33%), Positives = 37/68 (54%)
 Frame = -1

Query: 454 GLCFHGYQKLSYMILARVSPVTHSVANCXXXXXXXXXXVLFFRTPISPVNALGTGAALAG 275
           G+ +H Y +++   L RV+P+TH+V N           ++ F   IS    +GT  A+AG
Sbjct: 334 GMFYHLYNQVATNTLERVAPLTHAVGNVLKRVFVIGFSIVIFGNKISTQTGIGTCIAIAG 393

Query: 274 VYLYSRLK 251
           V +YS +K
Sbjct: 394 VAIYSFIK 401

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>CSPG4_HUMAN (Q6UVK1) Chondroitin sulfate proteoglycan 4 precursor (Chondroitin|
           sulfate proteoglycan NG2) (Melanoma chondroitin sulfate
           proteoglycan) (Melanoma-associated chondroitin sulfate
           proteoglycan)
          Length = 2322

 Score = 33.9 bits (76), Expect = 0.24
 Identities = 24/54 (44%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
 Frame = -3

Query: 467 GGTGRPLLPWLPEAVVHDPGEGVARDPLRGQLRQAS-GGHRLFRPLLPDAHLPC 309
           GGTG   LP+L          G +R PLRG L  A+  G  L RPL PD H  C
Sbjct: 149 GGTGTLGLPYL---------RGTSR-PLRGCLHAATLNGRSLLRPLTPDVHEGC 192

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>CAFF_RIFPA (P30754) Fibril-forming collagen alpha chain (Fragment)|
          Length = 1027

 Score = 33.5 bits (75), Expect = 0.32
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = +1

Query: 388 GSRATPSPGSCTTASGSHGSRGRPVPPSRTAPAGS 492
           G R +P P      +GS G +G+P PP    PAG+
Sbjct: 622 GERGSPGPAGERGPAGSQGIQGQPGPPGDAGPAGT 656

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>CO7A1_HUMAN (Q02388) Collagen alpha-1(VII) chain precursor (Long-chain collagen)|
            (LC collagen)
          Length = 2944

 Score = 32.3 bits (72), Expect = 0.71
 Identities = 15/34 (44%), Positives = 16/34 (47%)
 Frame = +1

Query: 388  GSRATPSPGSCTTASGSHGSRGRPVPPSRTAPAG 489
            G R TP  G     SG+ GS G P PP    P G
Sbjct: 2701 GERGTPGIGGFPGPSGNDGSAGPPGPPGSVGPRG 2734

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>CTTB2_OTOGA (Q2QLG9) Cortactin-binding protein 2 (CortBP2)|
          Length = 1655

 Score = 32.3 bits (72), Expect = 0.71
 Identities = 19/41 (46%), Positives = 19/41 (46%), Gaps = 3/41 (7%)
 Frame = +1

Query: 379 PRSGSRAT---PSPGSCTTASGSHGSRGRPVPPSRTAPAGS 492
           P S SR     PSPGS   A GS    G   PP   AP GS
Sbjct: 367 PPSASRIEENGPSPGSTPDAPGSAAPPGSAAPPGSAAPPGS 407

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>CO1A1_CHICK (P02457) Collagen alpha-1(I) chain precursor|
          Length = 1453

 Score = 32.3 bits (72), Expect = 0.71
 Identities = 14/36 (38%), Positives = 16/36 (44%)
 Frame = +1

Query: 382 RSGSRATPSPGSCTTASGSHGSRGRPVPPSRTAPAG 489
           + G R  P P     A+G  G  G   PP  T PAG
Sbjct: 583 KPGERGAPGPPGAVGAAGKDGEAGAQGPPGPTGPAG 618



 Score = 30.8 bits (68), Expect = 2.1
 Identities = 14/34 (41%), Positives = 16/34 (47%)
 Frame = +1

Query: 388 GSRATPSPGSCTTASGSHGSRGRPVPPSRTAPAG 489
           G R  P P     A G+ G+ G   PP  T PAG
Sbjct: 297 GERGRPGPSGPAGARGNDGAPGAAGPPGPTGPAG 330



 Score = 29.6 bits (65), Expect = 4.6
 Identities = 14/34 (41%), Positives = 15/34 (44%)
 Frame = +1

Query: 388 GSRATPSPGSCTTASGSHGSRGRPVPPSRTAPAG 489
           G    P P   T A G+ G RG P PP     AG
Sbjct: 771 GEAGPPGPAGPTGARGAPGDRGEPGPPGPAGFAG 804

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>CO1A2_RAT (P02466) Collagen alpha-2(I) chain precursor|
          Length = 1372

 Score = 32.0 bits (71), Expect = 0.93
 Identities = 12/36 (33%), Positives = 17/36 (47%)
 Frame = +1

Query: 385  SGSRATPSPGSCTTASGSHGSRGRPVPPSRTAPAGS 492
            +G+   P P      +G HG+RG P P     P G+
Sbjct: 963  TGAAGAPGPHGSVGPAGKHGNRGEPGPAGSVGPVGA 998

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>CO1A2_MOUSE (Q01149) Collagen alpha-2(I) chain precursor|
          Length = 1372

 Score = 32.0 bits (71), Expect = 0.93
 Identities = 12/36 (33%), Positives = 17/36 (47%)
 Frame = +1

Query: 385  SGSRATPSPGSCTTASGSHGSRGRPVPPSRTAPAGS 492
            +G+   P P      +G HG+RG P P     P G+
Sbjct: 963  TGAAGAPGPHGSVGPAGKHGNRGEPGPAGSVGPVGA 998

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>VGLC_HHV2G (P03173) Glycoprotein C precursor (Glycoprotein F)|
          Length = 479

 Score = 32.0 bits (71), Expect = 0.93
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = +1

Query: 382 RSGSRATPSPGSCTTASGSHGSRGRPVPPSRTAP 483
           RS  R TP+P     A+ S  S  +P PP +T P
Sbjct: 52  RSAPRTTPTPPQPRKATKSKASTAKPAPPPKTGP 85

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>CSPG4_RAT (Q00657) Chondroitin sulfate proteoglycan 4 precursor (Chondroitin|
           sulfate proteoglycan NG2) (HSN tumor-specific antigen)
          Length = 2326

 Score = 31.6 bits (70), Expect = 1.2
 Identities = 27/71 (38%), Positives = 32/71 (45%), Gaps = 4/71 (5%)
 Frame = -3

Query: 467 GGTGRPLLPWLPEAVVHDPGEGVARDPLRGQLRQAS-GGHRLFRPLLPDAHLPCQ---CT 300
           G +G   LP+L         +G++R PLRG L  A   G  L RPL PD H  C      
Sbjct: 150 GSSGSLDLPYL---------KGISR-PLRGCLHSAILNGRNLLRPLTPDVHEGCAEEFSA 199

Query: 299 GDWCSTGGSLP 267
           GD    G S P
Sbjct: 200 GDEVGLGFSGP 210

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>PHF1_CLOPA (P29166) Periplasmic [Fe] hydrogenase 1 (EC 1.12.7.2) (Fe-only|
           hydrogenase) (CpI)
          Length = 574

 Score = 31.2 bits (69), Expect = 1.6
 Identities = 14/45 (31%), Positives = 23/45 (51%)
 Frame = +3

Query: 42  EDVTNLQDQKFGLATIERSCCRL*YRCTTGCGKFCTTYYLNTFSR 176
           +D T   D++    T++R+ C L  RC   CGK   TY +   ++
Sbjct: 127 KDKTEYVDERSKSLTVDRTKCLLCGRCVNACGKNTETYAMKFLNK 171

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>CO1A2_RABIT (Q28668) Collagen alpha-2(I) chain precursor (Fragment)|
          Length = 526

 Score = 31.2 bits (69), Expect = 1.6
 Identities = 12/35 (34%), Positives = 16/35 (45%)
 Frame = +1

Query: 388 GSRATPSPGSCTTASGSHGSRGRPVPPSRTAPAGS 492
           G+   P P      +G HG+RG P P     P G+
Sbjct: 118 GAAGAPGPQGSVGPTGKHGNRGEPGPAGSIGPVGA 152



 Score = 29.6 bits (65), Expect = 4.6
 Identities = 14/37 (37%), Positives = 16/37 (43%)
 Frame = +1

Query: 382 RSGSRATPSPGSCTTASGSHGSRGRPVPPSRTAPAGS 492
           RSG   T  P     + GS G  G P PP    P G+
Sbjct: 227 RSGHPGTVGPAGLRGSQGSQGPAGPPGPPGPPGPPGA 263

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>CO1A2_BOVIN (P02465) Collagen alpha-2(I) chain precursor|
          Length = 1364

 Score = 31.2 bits (69), Expect = 1.6
 Identities = 13/35 (37%), Positives = 16/35 (45%)
 Frame = +1

Query: 388  GSRATPSPGSCTTASGSHGSRGRPVPPSRTAPAGS 492
            G+   P P       G HG+RG P P     PAG+
Sbjct: 956  GAAGAPGPQGPVGPVGKHGNRGEPGPAGAVGPAGA 990

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>VGLC_HHV2H (Q89730) Glycoprotein C precursor|
          Length = 480

 Score = 30.4 bits (67), Expect = 2.7
 Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
 Frame = +1

Query: 379 PRSGS--RATPSPGSCTTASGSHGSRGRPVPPSRTAP 483
           PR+ S  R TP+P     A+ S  S  +P PP +T P
Sbjct: 50  PRNASAPRTTPTPPQPRKATKSKASTAKPAPPPKTGP 86

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>VGLC_HHV23 (P06475) Glycoprotein C precursor|
          Length = 480

 Score = 30.4 bits (67), Expect = 2.7
 Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
 Frame = +1

Query: 379 PRSGS--RATPSPGSCTTASGSHGSRGRPVPPSRTAP 483
           PR+ S  R TP+P     A+ S  S  +P PP +T P
Sbjct: 50  PRNASAPRTTPTPPQPRKATKSKASTAKPAPPPKTGP 86

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>CELR3_HUMAN (Q9NYQ7) Cadherin EGF LAG seven-pass G-type receptor 3 precursor|
            (Flamingo homolog 1) (hFmi1) (Multiple epidermal growth
            factor-like domains 2) (Epidermal growth factor-like 1)
          Length = 3312

 Score = 30.0 bits (66), Expect = 3.5
 Identities = 14/26 (53%), Positives = 17/26 (65%), Gaps = 4/26 (15%)
 Frame = -3

Query: 347  LFRPLLPDAHLPCQC----TGDWCST 282
            LFRP+ P A L C+C    TGD+C T
Sbjct: 1409 LFRPIQPIAGLRCRCPPGFTGDFCET 1434

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>CO1A2_CANFA (O46392) Collagen alpha-2(I) chain precursor|
          Length = 1366

 Score = 30.0 bits (66), Expect = 3.5
 Identities = 12/35 (34%), Positives = 16/35 (45%)
 Frame = +1

Query: 388  GSRATPSPGSCTTASGSHGSRGRPVPPSRTAPAGS 492
            G+   P P      +G HG+RG P P     P G+
Sbjct: 958  GAVGAPGPHGPVGPTGKHGNRGEPGPAGSVGPVGA 992

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>CELR3_RAT (O88278) Cadherin EGF LAG seven-pass G-type receptor 3 precursor|
            (Multiple epidermal growth factor-like domains 2)
          Length = 3313

 Score = 30.0 bits (66), Expect = 3.5
 Identities = 14/26 (53%), Positives = 17/26 (65%), Gaps = 4/26 (15%)
 Frame = -3

Query: 347  LFRPLLPDAHLPCQC----TGDWCST 282
            LFRP+ P A L C+C    TGD+C T
Sbjct: 1400 LFRPIQPIAGLRCRCPPGFTGDFCET 1425

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>CELR3_MOUSE (Q91ZI0) Cadherin EGF LAG seven-pass G-type receptor 3 precursor|
          Length = 3301

 Score = 30.0 bits (66), Expect = 3.5
 Identities = 14/26 (53%), Positives = 17/26 (65%), Gaps = 4/26 (15%)
 Frame = -3

Query: 347  LFRPLLPDAHLPCQC----TGDWCST 282
            LFRP+ P A L C+C    TGD+C T
Sbjct: 1400 LFRPIQPIAGLRCRCPPGFTGDFCET 1425

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>COCA1_HUMAN (Q99715) Collagen alpha-1(XII) chain precursor|
          Length = 3063

 Score = 29.6 bits (65), Expect = 4.6
 Identities = 18/40 (45%), Positives = 19/40 (47%), Gaps = 5/40 (12%)
 Frame = +1

Query: 385  SGSRATPSPG-----SCTTASGSHGSRGRPVPPSRTAPAG 489
            SG R  P P      S T   GS GSRG P PP R   +G
Sbjct: 2994 SGPRGLPGPPGPQGESRTGPPGSTGSRGPPGPPGRPGNSG 3033

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>WRK20_ARATH (Q93WV0) Probable WRKY transcription factor 20 (WRKY DNA-binding|
           protein 20)
          Length = 557

 Score = 29.6 bits (65), Expect = 4.6
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = +1

Query: 388 GSRATPSPGSCTTASGSHGSRGRPVPPSRTAPAGS 492
           G  ++ SP S + A+GS     RP PP +  P  S
Sbjct: 148 GHGSSHSPSSISDAAGSSSELSRPTPPCQMTPTSS 182

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>RGS2_MOUSE (O08849) Regulator of G-protein signaling 2 (RGS2)|
          Length = 211

 Score = 29.6 bits (65), Expect = 4.6
 Identities = 16/44 (36%), Positives = 24/44 (54%)
 Frame = +1

Query: 58  FKTKSLVWPLLKEAAVGCSTGVLRAVASSVQPTISIHFLDLVFY 189
           F+TKSL+   ++EA  GC T   + V S ++      FL+  FY
Sbjct: 152 FQTKSLIAQNIQEATSGCFTTAQKRVYSLMENNSYPRFLESEFY 195

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>CO1A1_HUMAN (P02452) Collagen alpha-1(I) chain precursor|
          Length = 1464

 Score = 29.3 bits (64), Expect = 6.0
 Identities = 12/36 (33%), Positives = 15/36 (41%)
 Frame = +1

Query: 382 RSGSRATPSPGSCTTASGSHGSRGRPVPPSRTAPAG 489
           ++G R  P P      +G  G  G   PP    PAG
Sbjct: 594 KAGERGVPGPPGAVGPAGKDGEAGAQGPPGPAGPAG 629



 Score = 28.9 bits (63), Expect = 7.8
 Identities = 13/36 (36%), Positives = 15/36 (41%)
 Frame = +1

Query: 382 RSGSRATPSPGSCTTASGSHGSRGRPVPPSRTAPAG 489
           ++G    P P       G  G RG P PP    PAG
Sbjct: 576 QAGVMGFPGPKGAAGEPGKAGERGVPGPPGAVGPAG 611

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>CO1A2_CHICK (P02467) Collagen alpha-2(I) chain precursor (Fragments)|
          Length = 1362

 Score = 29.3 bits (64), Expect = 6.0
 Identities = 14/36 (38%), Positives = 17/36 (47%)
 Frame = +1

Query: 385  SGSRATPSPGSCTTASGSHGSRGRPVPPSRTAPAGS 492
            SG+   P P      SG  G+RG P P     PAG+
Sbjct: 955  SGALGAPGPHGQVGPSGKPGNRGDPGPVGPVGPAGA 990

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>CO1A1_CANFA (Q9XSJ7) Collagen alpha-1(I) chain precursor|
          Length = 1460

 Score = 29.3 bits (64), Expect = 6.0
 Identities = 12/36 (33%), Positives = 15/36 (41%)
 Frame = +1

Query: 382 RSGSRATPSPGSCTTASGSHGSRGRPVPPSRTAPAG 489
           ++G R  P P      +G  G  G   PP    PAG
Sbjct: 590 KAGERGVPGPPGAVGPAGKDGEAGAQGPPGPAGPAG 625



 Score = 28.9 bits (63), Expect = 7.8
 Identities = 13/36 (36%), Positives = 15/36 (41%)
 Frame = +1

Query: 382 RSGSRATPSPGSCTTASGSHGSRGRPVPPSRTAPAG 489
           ++G    P P       G  G RG P PP    PAG
Sbjct: 572 QAGVMGFPGPKGAAGEPGKAGERGVPGPPGAVGPAG 607

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>CO1A1_BOVIN (P02453) Collagen alpha-1(I) chain (Fragments)|
          Length = 779

 Score = 29.3 bits (64), Expect = 6.0
 Identities = 12/36 (33%), Positives = 15/36 (41%)
 Frame = +1

Query: 382 RSGSRATPSPGSCTTASGSHGSRGRPVPPSRTAPAG 489
           ++G R  P P      +G  G  G   PP    PAG
Sbjct: 159 KAGERGVPGPPGAVGPAGKDGEAGAQGPPGPAGPAG 194

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>S12A7_MOUSE (Q9WVL3) Solute carrier family 12 member 7 (Electroneutral|
           potassium-chloride cotransporter 4) (K-Cl cotransporter
           4)
          Length = 1083

 Score = 29.3 bits (64), Expect = 6.0
 Identities = 15/38 (39%), Positives = 21/38 (55%)
 Frame = +1

Query: 79  WPLLKEAAVGCSTGVLRAVASSVQPTISIHFLDLVFYI 192
           W LL  A + C TG+L A   SV P +S+ FL    ++
Sbjct: 556 WALLLTALI-CETGILIASLDSVAPILSMFFLMCYMFV 592

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>COCA1_CHICK (P13944) Collagen alpha-1(XII) chain precursor (Fibrochimerin)|
          Length = 3124

 Score = 29.3 bits (64), Expect = 6.0
 Identities = 18/39 (46%), Positives = 18/39 (46%), Gaps = 5/39 (12%)
 Frame = +1

Query: 388  GSRATPSPG-----SCTTASGSHGSRGRPVPPSRTAPAG 489
            G R  P P      S T   GS GSRG P PP R   AG
Sbjct: 2999 GPRGLPGPPGPQGESRTGPPGSTGSRGPPGPPGRPGNAG 3037

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>WIRE_MOUSE (Q6PEV3) WIP-related protein (WASP-interacting protein-related|
           protein)
          Length = 440

 Score = 29.3 bits (64), Expect = 6.0
 Identities = 16/37 (43%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
 Frame = +1

Query: 382 RSGSRATPSPGSCTTASGSHG-SRGRPVPPSRTAPAG 489
           R+G+R  P P       GS   SRG+P PP    PAG
Sbjct: 333 RNGARDAPPPPPPYRMHGSEPPSRGKPPPPPSRTPAG 369

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>WIRE_HUMAN (Q8TF74) WIP-related protein (WASP-interacting protein-related|
           protein) (WIP-and CR16-homologous protein)
          Length = 440

 Score = 29.3 bits (64), Expect = 6.0
 Identities = 16/37 (43%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
 Frame = +1

Query: 382 RSGSRATPSPGSCTTASGSHG-SRGRPVPPSRTAPAG 489
           R+G+R  P P       GS   SRG+P PP    PAG
Sbjct: 333 RNGARDAPPPPPPYRMHGSEPPSRGKPPPPPSRTPAG 369

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>CO1A1_RAT (P02454) Collagen alpha-1(I) chain precursor|
          Length = 1453

 Score = 28.9 bits (63), Expect = 7.8
 Identities = 13/34 (38%), Positives = 15/34 (44%)
 Frame = +1

Query: 388 GSRATPSPGSCTTASGSHGSRGRPVPPSRTAPAG 489
           G R  P P     A G+ G+ G   PP  T P G
Sbjct: 297 GERGRPGPPGTAGARGNDGAVGAAGPPGPTGPTG 330

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>CO1A1_MOUSE (P11087) Collagen alpha-1(I) chain precursor|
          Length = 1453

 Score = 28.9 bits (63), Expect = 7.8
 Identities = 13/36 (36%), Positives = 15/36 (41%)
 Frame = +1

Query: 382 RSGSRATPSPGSCTTASGSHGSRGRPVPPSRTAPAG 489
           ++G    P P       G  G RG P PP    PAG
Sbjct: 565 QAGVMGFPGPKGTAGEPGKAGERGLPGPPGAVGPAG 600



 Score = 28.9 bits (63), Expect = 7.8
 Identities = 13/34 (38%), Positives = 15/34 (44%)
 Frame = +1

Query: 388 GSRATPSPGSCTTASGSHGSRGRPVPPSRTAPAG 489
           G R  P P     A G+ G+ G   PP  T P G
Sbjct: 297 GERGRPGPPGTAGARGNDGAVGAAGPPGPTGPTG 330

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>CO1A2_HUMAN (P08123) Collagen alpha-2(I) chain precursor|
          Length = 1366

 Score = 28.9 bits (63), Expect = 7.8
 Identities = 12/35 (34%), Positives = 16/35 (45%)
 Frame = +1

Query: 388  GSRATPSPGSCTTASGSHGSRGRPVPPSRTAPAGS 492
            G+   P P      +G HG+RG   P     PAG+
Sbjct: 958  GAAGAPGPHGPVGPAGKHGNRGETGPSGPVGPAGA 992

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>S35B1_HUMAN (P78383) Solute carrier family 35 member B1 (UDP-galactose|
           transporter-related protein 1) (UGTrel1) (hUGTrel1)
          Length = 322

 Score = 28.9 bits (63), Expect = 7.8
 Identities = 17/67 (25%), Positives = 28/67 (41%)
 Frame = -1

Query: 433 QKLSYMILARVSPVTHSVANCXXXXXXXXXXVLFFRTPISPVNALGTGAALAGVYLYSRL 254
           Q   +M +    P+T S+             V+ F  PISP+  +GT     G+ L ++ 
Sbjct: 254 QSFIFMTVVYFGPLTCSIITTTRKFFTILASVILFANPISPMQWVGTVLVFLGLGLDAKF 313

Query: 253 KKTKPKS 233
            K   K+
Sbjct: 314 GKGAKKT 320

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>S35B1_BOVIN (Q8MII5) Solute carrier family 35 member B1 (Endoplasmic reticulum|
           nucleotide sugar transporter 1)
          Length = 322

 Score = 28.9 bits (63), Expect = 7.8
 Identities = 17/67 (25%), Positives = 28/67 (41%)
 Frame = -1

Query: 433 QKLSYMILARVSPVTHSVANCXXXXXXXXXXVLFFRTPISPVNALGTGAALAGVYLYSRL 254
           Q   +M +    P+T S+             V+ F  PISP+  +GT     G+ L ++ 
Sbjct: 254 QSFIFMTVVYFGPLTCSIITTTRKFFTILASVILFANPISPMQWVGTVLVFLGLGLDAKF 313

Query: 253 KKTKPKS 233
            K   K+
Sbjct: 314 GKGAKKT 320

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>COCA1_BOVIN (P25508) Collagen alpha-1(XII) chain (Fragments)|
          Length = 86

 Score = 28.9 bits (63), Expect = 7.8
 Identities = 17/39 (43%), Positives = 18/39 (46%), Gaps = 5/39 (12%)
 Frame = +1

Query: 388 GSRATPSPG-----SCTTASGSHGSRGRPVPPSRTAPAG 489
           G R  P P      S T   GS GSRG P PP R   +G
Sbjct: 46  GERGLPGPPGPQGESRTGPPGSTGSRGPPGPPGRPGDSG 84

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>YDB1_SCHPO (Q10354) Hypothetical protein C22E12.01 in chromosome I|
          Length = 374

 Score = 28.9 bits (63), Expect = 7.8
 Identities = 15/58 (25%), Positives = 26/58 (44%)
 Frame = -1

Query: 415 ILARVSPVTHSVANCXXXXXXXXXXVLFFRTPISPVNALGTGAALAGVYLYSRLKKTK 242
           ++ + S VT SV              LF+   + P+N +G    L G+ +Y+  + TK
Sbjct: 298 LIQKTSIVTLSVCGILKEIITIIASTLFYHDILLPINIVGLVITLCGIGVYNYYRITK 355


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 70,024,497
Number of Sequences: 219361
Number of extensions: 1372359
Number of successful extensions: 5490
Number of sequences better than 10.0: 48
Number of HSP's better than 10.0 without gapping: 4201
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5447
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3478785780
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result