Clone Name | rbart15d05 |
---|---|
Clone Library Name | barley_pub |
>gb|AY109990.1| Zea mays CL24131_1 mRNA sequence Length = 605 Score = 147 bits (74), Expect = 4e-32 Identities = 173/206 (83%) Strand = Plus / Plus Query: 288 gcaccagtccccagtgcattgacaggggagatgggcgtccggaagaagaggacggaagag 347 |||||||| || |||||||||||||| || || || || | |||||| || ||||| ||| Sbjct: 216 gcaccagttcctagtgcattgacaggcgaaataggtgtgctgaagaacagaacggaggag 275 Query: 348 acgatgaccaccactcgcttgacgcagttggccacggagtgggtcacgggcgacaccctc 407 ||||| || ||||| ||||| ||||||||||| |||||||| ||||| |||||||| ||| Sbjct: 276 acgatcacaaccacacgctttacgcagttggcgacggagtgtgtcactggcgacactctc 335 Query: 408 gccaggatcatgtacgacagcttctggtagccatggaagcagaggccggccagtgccgcc 467 | || ||||| |||||| |||||||| |||||||||||||| || || || || || || Sbjct: 336 gacaagatcaagtacgagagcttctgatagccatggaagcacagacctgcgagcgctgct 395 Query: 468 ctcacgcacagctcctgcaggttcag 493 |||||||||||||| || |||||||| Sbjct: 396 ctcacgcacagctcttggaggttcag 421
>ref|XM_550285.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1652 Score = 131 bits (66), Expect = 2e-27 Identities = 192/234 (82%) Strand = Plus / Minus Query: 257 cctggagtacaggtaaactcccgccagtgctgcaccagtccccagtgcattgacagggga 316 |||||| |||||| ||||||| ||| ||| ||||||| || |||||||||||||| || Sbjct: 1375 cctggaatacaggaaaactcctcccaatgcaacaccagttcctagtgcattgacaggtga 1316 Query: 317 gatgggcgtccggaagaagaggacggaagagacgatgaccaccactcgcttgacgcagtt 376 || || || | ||||||||| || || | |||||||| ||||| |||||||||||||| Sbjct: 1315 aattggggttctgaagaagagaacagacgccacgatgacgaccacacgcttgacgcagtt 1256 Query: 377 ggccacggagtgggtcacgggcgacaccctcgccaggatcatgtacgacagcttctggta 436 ||| || |||||||| || || ||||| || |||||||||| ||| || ||||||||||| Sbjct: 1255 ggcgacagagtgggtgacaggtgacactctggccaggatcaagtaggagagcttctggta 1196 Query: 437 gccatggaagcagaggccggccagtgccgccctcacgcacagctcctgcaggtt 490 |||||||||||| | ||| || ||||| || || || |||||||| || ||||| Sbjct: 1195 gccatggaagcaaaagccagctagtgctgctcttacacacagctcttggaggtt 1142
>dbj|AK060343.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-008-E01, full insert sequence Length = 1652 Score = 131 bits (66), Expect = 2e-27 Identities = 192/234 (82%) Strand = Plus / Minus Query: 257 cctggagtacaggtaaactcccgccagtgctgcaccagtccccagtgcattgacagggga 316 |||||| |||||| ||||||| ||| ||| ||||||| || |||||||||||||| || Sbjct: 1375 cctggaatacaggaaaactcctcccaatgcaacaccagttcctagtgcattgacaggtga 1316 Query: 317 gatgggcgtccggaagaagaggacggaagagacgatgaccaccactcgcttgacgcagtt 376 || || || | ||||||||| || || | |||||||| ||||| |||||||||||||| Sbjct: 1315 aattggggttctgaagaagagaacagacgccacgatgacgaccacacgcttgacgcagtt 1256 Query: 377 ggccacggagtgggtcacgggcgacaccctcgccaggatcatgtacgacagcttctggta 436 ||| || |||||||| || || ||||| || |||||||||| ||| || ||||||||||| Sbjct: 1255 ggcgacagagtgggtgacaggtgacactctggccaggatcaagtaggagagcttctggta 1196 Query: 437 gccatggaagcagaggccggccagtgccgccctcacgcacagctcctgcaggtt 490 |||||||||||| | ||| || ||||| || || || |||||||| || ||||| Sbjct: 1195 gccatggaagcaaaagccagctagtgctgctcttacacacagctcttggaggtt 1142
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 75.8 bits (38), Expect = 1e-10 Identities = 98/118 (83%) Strand = Plus / Minus Query: 300 agtgcattgacaggggagatgggcgtccggaagaagaggacggaagagacgatgaccacc 359 |||||||||||||| || || || || | ||||||||| || || | |||||||| ||| Sbjct: 3712215 agtgcattgacaggtgaaattggggttctgaagaagagaacagacgccacgatgacgacc 3712156 Query: 360 actcgcttgacgcagttggccacggagtgggtcacgggcgacaccctcgccaggatca 417 || ||||||||||||||||| || |||||||| || || ||||| || |||||||||| Sbjct: 3712155 acacgcttgacgcagttggcgacagagtgggtgacaggtgacactctggccaggatca 3712098 Score = 46.1 bits (23), Expect = 0.11 Identities = 53/63 (84%) Strand = Plus / Minus Query: 428 cttctggtagccatggaagcagaggccggccagtgccgccctcacgcacagctcctgcag 487 ||||||||||||||||||||| | ||| || ||||| || || || |||||||| || || Sbjct: 3711974 cttctggtagccatggaagcaaaagccagctagtgctgctcttacacacagctcttggag 3711915 Query: 488 gtt 490 ||| Sbjct: 3711914 gtt 3711912
>dbj|AP003282.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0583G08 Length = 135295 Score = 75.8 bits (38), Expect = 1e-10 Identities = 98/118 (83%) Strand = Plus / Minus Query: 300 agtgcattgacaggggagatgggcgtccggaagaagaggacggaagagacgatgaccacc 359 |||||||||||||| || || || || | ||||||||| || || | |||||||| ||| Sbjct: 120695 agtgcattgacaggtgaaattggggttctgaagaagagaacagacgccacgatgacgacc 120636 Query: 360 actcgcttgacgcagttggccacggagtgggtcacgggcgacaccctcgccaggatca 417 || ||||||||||||||||| || |||||||| || || ||||| || |||||||||| Sbjct: 120635 acacgcttgacgcagttggcgacagagtgggtgacaggtgacactctggccaggatca 120578 Score = 46.1 bits (23), Expect = 0.11 Identities = 53/63 (84%) Strand = Plus / Minus Query: 428 cttctggtagccatggaagcagaggccggccagtgccgccctcacgcacagctcctgcag 487 ||||||||||||||||||||| | ||| || ||||| || || || |||||||| || || Sbjct: 120454 cttctggtagccatggaagcaaaagccagctagtgctgctcttacacacagctcttggag 120395 Query: 488 gtt 490 ||| Sbjct: 120394 gtt 120392
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 73.8 bits (37), Expect = 5e-10 Identities = 70/81 (86%) Strand = Plus / Plus Query: 351 atgaccaccactcgcttgacgcagttggccacggagtgggtcacgggcgacaccctcgcc 410 |||||||||||||||||||| ||||| |||| ||||| || || || ||||| || ||| Sbjct: 7168545 atgaccaccactcgcttgacacagttacccaccgagtgagtaacaggggacactcttgcc 7168604 Query: 411 aggatcatgtacgacagcttc 431 |||||||||||||||| |||| Sbjct: 7168605 aggatcatgtacgacaccttc 7168625 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 149 aacctactatctcaatacat 168 |||||||||||||||||||| Sbjct: 20791333 aacctactatctcaatacat 20791352
>dbj|AP004011.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OJ1381_H04 Length = 130961 Score = 73.8 bits (37), Expect = 5e-10 Identities = 70/81 (86%) Strand = Plus / Plus Query: 351 atgaccaccactcgcttgacgcagttggccacggagtgggtcacgggcgacaccctcgcc 410 |||||||||||||||||||| ||||| |||| ||||| || || || ||||| || ||| Sbjct: 20650 atgaccaccactcgcttgacacagttacccaccgagtgagtaacaggggacactcttgcc 20709 Query: 411 aggatcatgtacgacagcttc 431 |||||||||||||||| |||| Sbjct: 20710 aggatcatgtacgacaccttc 20730
>dbj|AP004756.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0592C05 Length = 150478 Score = 73.8 bits (37), Expect = 5e-10 Identities = 70/81 (86%) Strand = Plus / Plus Query: 351 atgaccaccactcgcttgacgcagttggccacggagtgggtcacgggcgacaccctcgcc 410 |||||||||||||||||||| ||||| |||| ||||| || || || ||||| || ||| Sbjct: 120624 atgaccaccactcgcttgacacagttacccaccgagtgagtaacaggggacactcttgcc 120683 Query: 411 aggatcatgtacgacagcttc 431 |||||||||||||||| |||| Sbjct: 120684 aggatcatgtacgacaccttc 120704
>gb|AF372833.1|AF372833 Oryza sativa phosphoenolpyruvate/phosphate translocator mRNA, complete cds Length = 1588 Score = 71.9 bits (36), Expect = 2e-09 Identities = 66/76 (86%) Strand = Plus / Minus Query: 351 atgaccaccactcgcttgacgcagttggccacggagtgggtcacgggcgacaccctcgcc 410 |||||||||||||||||||| ||||| |||| ||||| || || || ||||| || ||| Sbjct: 1143 atgaccaccactcgcttgacacagttacccaccgagtgagtaacaggggacactcttgcc 1084 Query: 411 aggatcatgtacgaca 426 |||||||||||||||| Sbjct: 1083 aggatcatgtacgaca 1068
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 71.9 bits (36), Expect = 2e-09 Identities = 72/84 (85%) Strand = Plus / Minus Query: 348 acgatgaccaccactcgcttgacgcagttggccacggagtgggtcacgggcgacaccctc 407 ||||||||||| || ||||| || |||||| |||||||||| || || || ||||||||| Sbjct: 15591398 acgatgaccacgacacgcttaacacagttgcccacggagtgagtgacaggagacaccctc 15591339 Query: 408 gccaggatcatgtacgacagcttc 431 || ||||||||||| |||| |||| Sbjct: 15591338 gcgaggatcatgtaggacaccttc 15591315
>dbj|AP004645.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1119_B10 Length = 148508 Score = 71.9 bits (36), Expect = 2e-09 Identities = 72/84 (85%) Strand = Plus / Minus Query: 348 acgatgaccaccactcgcttgacgcagttggccacggagtgggtcacgggcgacaccctc 407 ||||||||||| || ||||| || |||||| |||||||||| || || || ||||||||| Sbjct: 139156 acgatgaccacgacacgcttaacacagttgcccacggagtgagtgacaggagacaccctc 139097 Query: 408 gccaggatcatgtacgacagcttc 431 || ||||||||||| |||| |||| Sbjct: 139096 gcgaggatcatgtaggacaccttc 139073
>dbj|AP004459.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0410E11 Length = 150200 Score = 71.9 bits (36), Expect = 2e-09 Identities = 72/84 (85%) Strand = Plus / Minus Query: 348 acgatgaccaccactcgcttgacgcagttggccacggagtgggtcacgggcgacaccctc 407 ||||||||||| || ||||| || |||||| |||||||||| || || || ||||||||| Sbjct: 25553 acgatgaccacgacacgcttaacacagttgcccacggagtgagtgacaggagacaccctc 25494 Query: 408 gccaggatcatgtacgacagcttc 431 || ||||||||||| |||| |||| Sbjct: 25493 gcgaggatcatgtaggacaccttc 25470
>dbj|AK071036.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023080P10, full insert sequence Length = 1672 Score = 71.9 bits (36), Expect = 2e-09 Identities = 66/76 (86%) Strand = Plus / Minus Query: 351 atgaccaccactcgcttgacgcagttggccacggagtgggtcacgggcgacaccctcgcc 410 |||||||||||||||||||| ||||| |||| ||||| || || || ||||| || ||| Sbjct: 1210 atgaccaccactcgcttgacacagttacccaccgagtgagtaacaggggacactcttgcc 1151 Query: 411 aggatcatgtacgaca 426 |||||||||||||||| Sbjct: 1150 aggatcatgtacgaca 1135
>ref|XM_481795.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1550 Score = 69.9 bits (35), Expect = 7e-09 Identities = 68/79 (86%) Strand = Plus / Minus Query: 348 acgatgaccaccactcgcttgacgcagttggccacggagtgggtcacgggcgacaccctc 407 ||||||||||| || ||||| || |||||| |||||||||| || || || ||||||||| Sbjct: 1234 acgatgaccacgacacgcttaacacagttgcccacggagtgagtgacaggagacaccctc 1175 Query: 408 gccaggatcatgtacgaca 426 || ||||||||||| |||| Sbjct: 1174 gcgaggatcatgtaggaca 1156
>dbj|AK066618.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013073L11, full insert sequence Length = 1551 Score = 69.9 bits (35), Expect = 7e-09 Identities = 68/79 (86%) Strand = Plus / Minus Query: 348 acgatgaccaccactcgcttgacgcagttggccacggagtgggtcacgggcgacaccctc 407 ||||||||||| || ||||| || |||||| |||||||||| || || || ||||||||| Sbjct: 1235 acgatgaccacgacacgcttaacacagttgcccacggagtgagtgacaggagacaccctc 1176 Query: 408 gccaggatcatgtacgaca 426 || ||||||||||| |||| Sbjct: 1175 gcgaggatcatgtaggaca 1157
>dbj|AK059591.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-030-D02, full insert sequence Length = 605 Score = 69.9 bits (35), Expect = 7e-09 Identities = 68/79 (86%) Strand = Plus / Minus Query: 348 acgatgaccaccactcgcttgacgcagttggccacggagtgggtcacgggcgacaccctc 407 ||||||||||| || ||||| || |||||| |||||||||| || || || ||||||||| Sbjct: 246 acgatgaccacgacacgcttaacacagttgcccacggagtgagtgacaggagacaccctc 187 Query: 408 gccaggatcatgtacgaca 426 || ||||||||||| |||| Sbjct: 186 gcgaggatcatgtaggaca 168
>gb|AC087553.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0685E10, complete sequence Length = 156772 Score = 67.9 bits (34), Expect = 3e-08 Identities = 58/66 (87%) Strand = Plus / Minus Query: 329 gaagaagaggacggaagagacgatgaccaccactcgcttgacgcagttggccacggagtg 388 ||||||||| ||||| |||||||||||||| ||||| ||||| |||||||| || || || Sbjct: 81928 gaagaagagaacggatgagacgatgaccacaactcgtttgacacagttggcaacagaatg 81869 Query: 389 ggtcac 394 |||||| Sbjct: 81868 ggtcac 81863
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 67.9 bits (34), Expect = 3e-08 Identities = 58/66 (87%) Strand = Plus / Minus Query: 329 gaagaagaggacggaagagacgatgaccaccactcgcttgacgcagttggccacggagtg 388 ||||||||| ||||| |||||||||||||| ||||| ||||| |||||||| || || || Sbjct: 4195449 gaagaagagaacggatgagacgatgaccacaactcgtttgacacagttggcaacagaatg 4195390 Query: 389 ggtcac 394 |||||| Sbjct: 4195389 ggtcac 4195384
>gb|AY326794.1| Chlamydomonas reinhardtii putative phosphate/phosphoenolpyruvate translocator precursor (PPT2) mRNA, complete cds; nuclear gene for plastid product Length = 2235 Score = 60.0 bits (30), Expect = 7e-06 Identities = 90/110 (81%) Strand = Plus / Minus Query: 348 acgatgaccaccactcgcttgacgcagttggccacggagtgggtcacgggcgacaccctc 407 ||||| |||||||| ||||| ||||||||| | | | ||| || ||||||| ||| | | Sbjct: 1136 acgatcaccaccacgcgcttcacgcagttgccgatgctgtgcgtgacgggcgccacacgc 1077 Query: 408 gccaggatcatgtacgacagcttctggtagccatggaagcagaggccggc 457 | |||||||||||| ||||||| ||||||| |||||||||| |||||| Sbjct: 1076 gacaggatcatgtaggacagctgctggtaggagtggaagcagatgccggc 1027
>gb|AY104580.1| Zea mays PCO071161 mRNA sequence Length = 1561 Score = 54.0 bits (27), Expect = 4e-04 Identities = 81/99 (81%) Strand = Plus / Minus Query: 351 atgaccaccactcgcttgacgcagttggccacggagtgggtcacgggcgacaccctcgcc 410 ||||||||||| ||||||||||| ||| |||| || || || || || || ||||| || Sbjct: 1194 atgaccaccacacgcttgacgcaattgcccactgaatgtgtgactggggataccctggcg 1135 Query: 411 aggatcatgtacgacagcttctggtagccatggaagcag 449 ||||||||||| |||| || ||||| ||||||||||| Sbjct: 1134 aggatcatgtatgacacctgttggtatgcatggaagcag 1096
>gb|U66404.1|ZMU66404 Zea mays plastid phosphate/phosphoenolpyruvate translocator precursor (MZPPT4) mRNA, complete cds Length = 1459 Score = 54.0 bits (27), Expect = 4e-04 Identities = 81/99 (81%) Strand = Plus / Minus Query: 351 atgaccaccactcgcttgacgcagttggccacggagtgggtcacgggcgacaccctcgcc 410 ||||||||||| ||||||||||| ||| |||| || || || || || || ||||| || Sbjct: 1086 atgaccaccacacgcttgacgcaattgcccactgaatgtgtgactggggataccctggcg 1027 Query: 411 aggatcatgtacgacagcttctggtagccatggaagcag 449 ||||||||||| |||| || ||||| ||||||||||| Sbjct: 1026 aggatcatgtatgacacctgttggtatgcatggaagcag 988
>gb|U66403.1|ZMU66403 Zea mays plastid phosphate/phosphoenolpyruvate translocator precursor (MZPPT1) mRNA, complete cds Length = 1452 Score = 54.0 bits (27), Expect = 4e-04 Identities = 81/99 (81%) Strand = Plus / Minus Query: 351 atgaccaccactcgcttgacgcagttggccacggagtgggtcacgggcgacaccctcgcc 410 ||||||||||| ||||||||||| ||| |||| || || || || || || ||||| || Sbjct: 1150 atgaccaccacacgcttgacgcaattgcccactgaatgtgtgactggggataccctggcg 1091 Query: 411 aggatcatgtacgacagcttctggtagccatggaagcag 449 ||||||||||| |||| || ||||| ||||||||||| Sbjct: 1090 aggatcatgtatgacacctgttggtatgcatggaagcag 1052
>gb|U66401.1|NTU66401 Nicotiana tabacum plastid phosphate/phosphoenolpyruvate translocator precursor (TABPPT8) mRNA, complete cds Length = 1638 Score = 52.0 bits (26), Expect = 0.002 Identities = 89/110 (80%) Strand = Plus / Minus Query: 312 ggggagatgggcgtccggaagaagaggacggaagagacgatgaccaccactcgcttgacg 371 ||||||| ||||| ||||| ||||| || |||| || ||||||||||||||||| || Sbjct: 1271 ggggagacaggcgtgcggaaaaagagaactgaagtcacaatgaccaccactcgcttcaca 1212 Query: 372 cagttggccacggagtgggtcacgggcgacaccctcgccaggatcatgta 421 || || ||||||| ||||| || || ||||||||| ||| |||||||| Sbjct: 1211 caattacccacggaatgggtaacaggagacaccctctccaatatcatgta 1162
>gb|AY177787.1| Chlamydomonas reinhardtii putative phosphate/phosphoenolpyruvate translocator precursor protein (PPT) mRNA, complete cds; nuclear gene for plastid product Length = 2057 Score = 48.1 bits (24), Expect = 0.027 Identities = 72/88 (81%) Strand = Plus / Minus Query: 349 cgatgaccaccactcgcttgacgcagttggccacggagtgggtcacgggcgacaccctcg 408 |||||||||| || ||||| ||||||||| | | | ||| ||||| |||||||| | || Sbjct: 1088 cgatgaccacaacccgcttcacgcagttgccgatgctgtgcgtcaccggcgacacgcgcg 1029 Query: 409 ccaggatcatgtacgacagcttctggta 436 |||||||||||||||| || |||||| Sbjct: 1028 ataggatcatgtacgacacctgctggta 1001
>gb|U13632.1|BOU13632 Brassica oleracea var. botrytis non-green plastid phosphate/triose-phosphate translocator TPT precursor (BONGTPT) mRNA, complete cds Length = 1403 Score = 48.1 bits (24), Expect = 0.027 Identities = 84/104 (80%) Strand = Plus / Minus Query: 348 acgatgaccaccactcgcttgacgcagttggccacggagtgggtcacgggcgacaccctc 407 |||||||||||||| ||||| || ||||| | || || || || ||||| || || ||| Sbjct: 1095 acgatgaccaccacacgcttcacacagtttcctacagaatgtgttacgggtgatactctc 1036 Query: 408 gccaggatcatgtacgacagcttctggtagccatggaagcagag 451 |||| ||||||||||||| || |||||| | ||||||||||| Sbjct: 1035 gccaatatcatgtacgacacctgctggtatgcgtggaagcagag 992
>gb|U66402.1|NTU66402 Nicotiana tabacum plastid phosphate/phosphoenolpyruvate translocator precursor (TABPPT10) mRNA, complete cds Length = 1550 Score = 44.1 bits (22), Expect = 0.43 Identities = 43/50 (86%) Strand = Plus / Minus Query: 327 cggaagaagaggacggaagagacgatgaccaccactcgcttgacgcagtt 376 ||||||||||| ||||||| || || |||||||||||||| || ||||| Sbjct: 1142 cggaagaagagcacggaagtcacaataaccaccactcgcttcacacagtt 1093
>gb|BT012715.1| Lycopersicon esculentum clone 113597F, mRNA sequence Length = 1720 Score = 42.1 bits (21), Expect = 1.7 Identities = 36/41 (87%) Strand = Plus / Minus Query: 327 cggaagaagaggacggaagagacgatgaccaccactcgctt 367 ||||||||||| ||||||| || || |||||||||||||| Sbjct: 986 cggaagaagagaacggaagtcacaataaccaccactcgctt 946
>gb|AC008791.5| Homo sapiens chromosome 5 clone CITB-H1_2040J22, complete sequence Length = 128182 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 52 caaatcttcaagaccaaaagt 72 ||||||||||||||||||||| Sbjct: 10139 caaatcttcaagaccaaaagt 10119
>gb|AC016614.6|AC016614 Homo sapiens chromosome 5 clone CTD-2217F15, complete sequence Length = 109314 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 52 caaatcttcaagaccaaaagt 72 ||||||||||||||||||||| Sbjct: 11906 caaatcttcaagaccaaaagt 11886
>gb|AE016853.1| Pseudomonas syringae pv. tomato str. DC3000 complete genome Length = 6397126 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 392 cacgggcgacaccctcgcca 411 |||||||||||||||||||| Sbjct: 5096284 cacgggcgacaccctcgcca 5096265
>gb|BC051097.1| Mus musculus FERM and PDZ domain containing 1, mRNA (cDNA clone IMAGE:4500789), partial cds Length = 3687 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 441 tggaagcagaggccggccag 460 |||||||||||||||||||| Sbjct: 3346 tggaagcagaggccggccag 3327
>gb|BC046469.1| Mus musculus FERM and PDZ domain containing 1, mRNA (cDNA clone IMAGE:5357039), partial cds Length = 2606 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 441 tggaagcagaggccggccag 460 |||||||||||||||||||| Sbjct: 2262 tggaagcagaggccggccag 2243
>gb|BC031840.1| Mus musculus FERM and PDZ domain containing 1, mRNA (cDNA clone IMAGE:4500789), partial cds Length = 3687 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 441 tggaagcagaggccggccag 460 |||||||||||||||||||| Sbjct: 3346 tggaagcagaggccggccag 3327
>ref|XM_975997.1| PREDICTED: Mus musculus similar to FERM and PDZ domain containing 1, transcript variant 1 (LOC669360), mRNA Length = 4089 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 441 tggaagcagaggccggccag 460 |||||||||||||||||||| Sbjct: 3770 tggaagcagaggccggccag 3751
>ref|XM_976029.1| PREDICTED: Mus musculus similar to FERM and PDZ domain containing 1, transcript variant 2 (LOC669360), mRNA Length = 4805 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 441 tggaagcagaggccggccag 460 |||||||||||||||||||| Sbjct: 4486 tggaagcagaggccggccag 4467
>ref|XM_976433.1| PREDICTED: Mus musculus similar to FERM and PDZ domain containing 1, transcript variant 1 (LOC674439), mRNA Length = 4518 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 441 tggaagcagaggccggccag 460 |||||||||||||||||||| Sbjct: 3753 tggaagcagaggccggccag 3734
>ref|XM_976475.1| PREDICTED: Mus musculus similar to FERM and PDZ domain containing 1, transcript variant 2 (LOC674439), mRNA Length = 5248 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 441 tggaagcagaggccggccag 460 |||||||||||||||||||| Sbjct: 4483 tggaagcagaggccggccag 4464
>ref|XM_898920.2| PREDICTED: Mus musculus similar to FERM and PDZ domain containing 1, transcript variant 2 (LOC666060), mRNA Length = 4535 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 441 tggaagcagaggccggccag 460 |||||||||||||||||||| Sbjct: 3770 tggaagcagaggccggccag 3751
>ref|XM_204152.5| PREDICTED: Mus musculus similar to FERM and PDZ domain containing 1, transcript variant 1 (LOC666060), mRNA Length = 5251 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 441 tggaagcagaggccggccag 460 |||||||||||||||||||| Sbjct: 4486 tggaagcagaggccggccag 4467
>gb|DP000044.2| Callithrix jacchus target 106 genomic scaffold Length = 574594 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 426 agcttctggtagccatggaa 445 |||||||||||||||||||| Sbjct: 282709 agcttctggtagccatggaa 282728
>gb|CP000300.1| Methanococcoides burtonii DSM 6242, complete genome Length = 2575032 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 35 ttcaggagaggatgttacaa 54 |||||||||||||||||||| Sbjct: 2159825 ttcaggagaggatgttacaa 2159806
>gb|AC157915.4| Mus musculus chromosome 19, clone RP24-294L7, complete sequence Length = 148975 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 67 aaaagtttggtctggccact 86 |||||||||||||||||||| Sbjct: 130370 aaaagtttggtctggccact 130389
>emb|AL162757.2|NMA6Z2491 Neisseria meningitidis serogroup A strain Z2491 complete genome; segment 6/7 Length = 326301 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 201 gtatctggaacagggaaaaa 220 |||||||||||||||||||| Sbjct: 143138 gtatctggaacagggaaaaa 143119
>emb|AJ391256.1|NME391256 Neisseria meningitidis DNA for region 3 (prophage Pnm1 and gpxA) and flanking genes, strain Z2491 Length = 44140 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 201 gtatctggaacagggaaaaa 220 |||||||||||||||||||| Sbjct: 4273 gtatctggaacagggaaaaa 4292
>dbj|AK133351.1| Mus musculus adult male testis cDNA, RIKEN full-length enriched library, clone:4932441D01 product:FERM and PDZ domain containing 1, full insert sequence Length = 3693 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 441 tggaagcagaggccggccag 460 |||||||||||||||||||| Sbjct: 2925 tggaagcagaggccggccag 2906
>gb|AC055738.16| Homo sapiens 3 BAC RP11-234G11 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 157711 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 19 aggagatttgccattattca 38 |||||||||||||||||||| Sbjct: 21384 aggagatttgccattattca 21403
>gb|AC137157.3| Mus musculus BAC clone RP23-377M11 from chromosome 8, complete sequence Length = 187666 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 131 ctgtggcaagttctgtacaa 150 |||||||||||||||||||| Sbjct: 128713 ctgtggcaagttctgtacaa 128694
>gb|AC105061.16| Mus musculus chromosome 19, clone RP23-117I10, complete sequence Length = 210038 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 67 aaaagtttggtctggccact 86 |||||||||||||||||||| Sbjct: 38603 aaaagtttggtctggccact 38622
>ref|XM_233002.3| PREDICTED: Rattus norvegicus FERM and PDZ domain containing 1 (predicted) (Frmpd1_predicted), mRNA Length = 4656 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 441 tggaagcagaggccggccag 460 |||||||||||||||||||| Sbjct: 4436 tggaagcagaggccggccag 4417
>dbj|AP006067.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0569E11 Length = 157319 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 149 aacctactatctcaatacat 168 |||||||||||||||||||| Sbjct: 66362 aacctactatctcaatacat 66381
>emb|AL121841.5|CNS01DSS Human chromosome 14 DNA sequence BAC R-850C20 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 207945 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 19 aggagatttgccattattca 38 |||||||||||||||||||| Sbjct: 201524 aggagatttgccattattca 201505
>emb|AL049831.2|CNS00008 Human chromosome 14 DNA sequence BAC R-330O19 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 218956 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 19 aggagatttgccattattca 38 |||||||||||||||||||| Sbjct: 7111 aggagatttgccattattca 7092
>dbj|AK122409.1| Mus musculus mRNA for mKIAA0967 protein Length = 4439 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 441 tggaagcagaggccggccag 460 |||||||||||||||||||| Sbjct: 4112 tggaagcagaggccggccag 4093
>gb|AE008384.1| Methanosarcina mazei strain Goe1, complete genome Length = 4096345 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 206 tggaacagggaaaaaacatcttca 229 |||||||||||||| ||||||||| Sbjct: 3362379 tggaacagggaaaagacatcttca 3362356
>gb|AC142410.4| Mus musculus BAC clone RP24-173I18 from 1, complete sequence Length = 145213 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 21 gagatttgccattattcagg 40 |||||||||||||||||||| Sbjct: 40529 gagatttgccattattcagg 40548
>gb|AC124516.4| Mus musculus BAC clone RP23-387C9 from 12, complete sequence Length = 236774 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 430 tctggtagccatggaagcagaggc 453 ||||||||||||||| |||||||| Sbjct: 196441 tctggtagccatggatgcagaggc 196464
>emb|AL772285.9| Mouse DNA sequence from clone RP23-76I24 on chromosome 4, complete sequence Length = 153899 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 441 tggaagcagaggccggccag 460 |||||||||||||||||||| Sbjct: 82721 tggaagcagaggccggccag 82702
>emb|AL627123.13| Mouse DNA sequence from clone RP23-351I23 on chromosome 4, complete sequence Length = 185022 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 252 ttgagcctggagtacaggta 271 |||||||||||||||||||| Sbjct: 80052 ttgagcctggagtacaggta 80071 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,343,650 Number of Sequences: 3902068 Number of extensions: 4343650 Number of successful extensions: 77007 Number of sequences better than 10.0: 58 Number of HSP's better than 10.0 without gapping: 57 Number of HSP's successfully gapped in prelim test: 2 Number of HSP's that attempted gapping in prelim test: 76776 Number of HSP's gapped (non-prelim): 232 length of query: 493 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 471 effective length of database: 17,147,199,772 effective search space: 8076331092612 effective search space used: 8076331092612 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)