ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart15d04 |
|---|---|
| Clone Library Name | barley_pub |
>GRISA_PODAN (Q92258) GRISEA protein (MAC1 homolog)| Length = 597 Score = 30.4 bits (67), Expect = 2.9 Identities = 16/49 (32%), Positives = 27/49 (55%) Frame = +3 Query: 339 CECCGTVANLEKKQLKSQVSTVHKMHTSSHEATASQRLNSNASPSDSPV 485 C+C G +A+ Q+ V + + SSH + S ++NASPS +P+ Sbjct: 444 CQCVGCLAHPFNSQMLQYVQNAYSPN-SSHGNSGSADSSANASPSANPL 491
>RS10_ICTPU (Q90YR4) 40S ribosomal protein S10| Length = 166 Score = 30.0 bits (66), Expect = 3.7 Identities = 15/53 (28%), Positives = 23/53 (43%) Frame = -1 Query: 325 MHYQMAGRSMHGAGSTKESF*ISAGTELFAWRSFHWFSLTHHHMYLSNLVAVP 167 +H A +S+ G KE F AWR F+W+ YL + + +P Sbjct: 43 LHVMKAMQSLKSCGYVKEQF---------AWRHFYWYLTNEGIQYLRDFLHLP 86
>POLG_RHDVS (Q86117) Genome polyprotein (p254) [Contains: p16; p23; Helicase| (2C-like protein) (P2C); 3A-like protein; Viral genome-linked protein (VPg); Thiol protease P3C (EC 3.4.22.-); RNA-directed RNA polymerase (EC 2.7.7.48); Capsid protein VP60, sub Length = 2344 Score = 30.0 bits (66), Expect = 3.7 Identities = 16/40 (40%), Positives = 20/40 (50%), Gaps = 1/40 (2%) Frame = -1 Query: 493 DPITGESEGLAFEFNLCEAVASWEEVCI-LCTVLTCDLSC 377 D TGE +A EFN C SW E+ I + C L+C Sbjct: 555 DSYTGEEVAIADEFNTCGDGESWVELFIQMVNTNPCPLNC 594
>POLG_RHDVF (P27410) Genome polyprotein (p254) [Contains: p16; p23; Helicase| (2C-like protein) (P2C); 3A-like protein; Viral genome-linked protein (VPg); Thiol protease P3C (EC 3.4.22.-); RNA-directed RNA polymerase (EC 2.7.7.48); Capsid protein VP60, sub Length = 2344 Score = 30.0 bits (66), Expect = 3.7 Identities = 16/40 (40%), Positives = 20/40 (50%), Gaps = 1/40 (2%) Frame = -1 Query: 493 DPITGESEGLAFEFNLCEAVASWEEVCI-LCTVLTCDLSC 377 D TGE +A EFN C SW E+ I + C L+C Sbjct: 555 DSYTGEEVAIADEFNTCGDGESWVELFIQMVNTNPCPLNC 594
>POLG_RHDVB (Q89273) Genome polyprotein (p254) [Contains: p16; p23; Helicase| (2C-like protein) (P2C); 3A-like protein; Viral genome-linked protein (VPg); Thiol protease P3C (EC 3.4.22.-); RNA-directed RNA polymerase (EC 2.7.7.48); Capsid protein VP60, sub Length = 2344 Score = 30.0 bits (66), Expect = 3.7 Identities = 16/40 (40%), Positives = 20/40 (50%), Gaps = 1/40 (2%) Frame = -1 Query: 493 DPITGESEGLAFEFNLCEAVASWEEVCI-LCTVLTCDLSC 377 D TGE +A EFN C SW E+ I + C L+C Sbjct: 555 DSYTGEEVAIADEFNTCGDGESWVELFIQMVNTNPCPLNC 594
>POLG_RHDVA (Q86119) Genome polyprotein (p254) [Contains: p16; p23; Helicase| (2C-like protein) (P2C); 3A-like protein; Viral genome-linked protein (VPg); Thiol protease P3C (EC 3.4.22.-); RNA-directed RNA polymerase (EC 2.7.7.48); Capsid protein VP60, sub Length = 2344 Score = 30.0 bits (66), Expect = 3.7 Identities = 16/40 (40%), Positives = 20/40 (50%), Gaps = 1/40 (2%) Frame = -1 Query: 493 DPITGESEGLAFEFNLCEAVASWEEVCI-LCTVLTCDLSC 377 D TGE +A EFN C SW E+ I + C L+C Sbjct: 555 DSYTGEEVAIADEFNTCGDGESWVELFIQMVNTNPCPLNC 594
>RS10_XENLA (Q07254) 40S ribosomal protein S10| Length = 165 Score = 29.6 bits (65), Expect = 4.9 Identities = 15/53 (28%), Positives = 23/53 (43%) Frame = -1 Query: 325 MHYQMAGRSMHGAGSTKESF*ISAGTELFAWRSFHWFSLTHHHMYLSNLVAVP 167 +H A +S+ G KE F AWR F+W+ YL + + +P Sbjct: 43 LHVMKAMQSLKSRGYVKEQF---------AWRHFYWYLTNEGIQYLRDFLHLP 86
>RS10_RAT (P63326) 40S ribosomal protein S10| Length = 165 Score = 29.3 bits (64), Expect = 6.4 Identities = 15/53 (28%), Positives = 23/53 (43%) Frame = -1 Query: 325 MHYQMAGRSMHGAGSTKESF*ISAGTELFAWRSFHWFSLTHHHMYLSNLVAVP 167 +H A +S+ G KE F AWR F+W+ YL + + +P Sbjct: 43 LHVMKAMQSLKSRGYVKEQF---------AWRHFYWYLTNEGIQYLRDYLHLP 86
>RS10_MOUSE (P63325) 40S ribosomal protein S10| Length = 165 Score = 29.3 bits (64), Expect = 6.4 Identities = 15/53 (28%), Positives = 23/53 (43%) Frame = -1 Query: 325 MHYQMAGRSMHGAGSTKESF*ISAGTELFAWRSFHWFSLTHHHMYLSNLVAVP 167 +H A +S+ G KE F AWR F+W+ YL + + +P Sbjct: 43 LHVMKAMQSLKSRGYVKEQF---------AWRHFYWYLTNEGIQYLRDYLHLP 86
>RS10_HUMAN (P46783) 40S ribosomal protein S10| Length = 165 Score = 29.3 bits (64), Expect = 6.4 Identities = 15/53 (28%), Positives = 23/53 (43%) Frame = -1 Query: 325 MHYQMAGRSMHGAGSTKESF*ISAGTELFAWRSFHWFSLTHHHMYLSNLVAVP 167 +H A +S+ G KE F AWR F+W+ YL + + +P Sbjct: 43 LHVMKAMQSLKSRGYVKEQF---------AWRHFYWYLTNEGIQYLRDYLHLP 86
>HEMA_INCYA (P68761) Hemagglutinin-esterase-fusion glycoprotein precursor (EC| 3.1.1.53) (HEF) [Contains: Hemagglutinin-esterase-fusion glycoprotein chain 1 (HEF1); Hemagglutinin-esterase-fusion glycoprotein chain 2 (HEF2)] (Fragment) Length = 642 Score = 29.3 bits (64), Expect = 6.4 Identities = 17/52 (32%), Positives = 29/52 (55%), Gaps = 3/52 (5%) Frame = -3 Query: 161 WSLPYRFGLYRCVLYLLWS-YVCMDAMELYVYMDAMEFW--MYGCYGILIYG 15 ++LP +FG Y C L+L+ S Y D+ E+Y ++ +Y YG ++ G Sbjct: 205 FTLPTQFGTYECKLHLVASCYFIYDSKEVYNKRGCDNYFQVIYDSYGKVVGG 256
>HEMA_INCAA (P68762) Hemagglutinin-esterase-fusion glycoprotein precursor (EC| 3.1.1.53) (HEF) [Contains: Hemagglutinin-esterase-fusion glycoprotein chain 1 (HEF1); Hemagglutinin-esterase-fusion glycoprotein chain 2 (HEF2)] (Fragment) Length = 642 Score = 29.3 bits (64), Expect = 6.4 Identities = 17/52 (32%), Positives = 29/52 (55%), Gaps = 3/52 (5%) Frame = -3 Query: 161 WSLPYRFGLYRCVLYLLWS-YVCMDAMELYVYMDAMEFW--MYGCYGILIYG 15 ++LP +FG Y C L+L+ S Y D+ E+Y ++ +Y YG ++ G Sbjct: 205 FTLPTQFGTYECKLHLVASCYFIYDSKEVYNKRGCDNYFQVIYDSYGKVVGG 256
>KPCD_RAT (P09215) Protein kinase C delta type (EC 2.7.11.13) (nPKC-delta)| Length = 673 Score = 28.9 bits (63), Expect = 8.3 Identities = 18/67 (26%), Positives = 31/67 (46%), Gaps = 9/67 (13%) Frame = +2 Query: 161 NKRHSYQIAEVHMVMCQ-------GEPMKASPCKEFCSCTYSEGFLC*SC--AMHTPPSH 313 N+R + + A++H + G+P S CKEF +G+ C C A+H Sbjct: 143 NRRGAIKQAKIHYIKNHEFIATFFGQPTFCSVCKEFVWGLNKQGYKCRQCNAAIHKKCID 202 Query: 314 LVMHQCT 334 ++ +CT Sbjct: 203 KIIGRCT 209
>Y1375_MYCTU (P71803) Hypothetical UPF0142 protein Rv1375/MT1419| Length = 439 Score = 28.9 bits (63), Expect = 8.3 Identities = 9/17 (52%), Positives = 14/17 (82%) Frame = -2 Query: 483 LESLKGWHLSSISAKLW 433 +ESL+GWH +++A LW Sbjct: 130 MESLEGWHAENVTADLW 146
>KPCT_HUMAN (Q04759) Protein kinase C theta type (EC 2.7.11.13) (nPKC-theta)| Length = 706 Score = 28.9 bits (63), Expect = 8.3 Identities = 21/75 (28%), Positives = 34/75 (45%), Gaps = 9/75 (12%) Frame = +2 Query: 137 TQIYKAVTNKRHSYQIAEVHMVMCQ-------GEPMKASPCKEFCSCTYSEGFLC*SC-- 289 T+ + A+ +R + + A+VH V C +P S C EF +G+ C C Sbjct: 136 TEGFFALHQRRGAIKQAKVHHVKCHEFTATFFPQPTFCSVCHEFVWGLNKQGYQCRQCNA 195 Query: 290 AMHTPPSHLVMHQCT 334 A+H V+ +CT Sbjct: 196 AIHKKCIDKVIAKCT 210
>KPCD_MOUSE (P28867) Protein kinase C delta type (EC 2.7.11.13) (nPKC-delta)| Length = 674 Score = 28.9 bits (63), Expect = 8.3 Identities = 18/67 (26%), Positives = 31/67 (46%), Gaps = 9/67 (13%) Frame = +2 Query: 161 NKRHSYQIAEVHMVMCQ-------GEPMKASPCKEFCSCTYSEGFLC*SC--AMHTPPSH 313 N+R + + A++H + G+P S CKEF +G+ C C A+H Sbjct: 143 NRRGAIKQAKIHYIKNHEFIATFFGQPTFCSVCKEFVWGLNKQGYKCRQCNAAIHKKCID 202 Query: 314 LVMHQCT 334 ++ +CT Sbjct: 203 KIIGRCT 209 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 78,683,073 Number of Sequences: 219361 Number of extensions: 1690746 Number of successful extensions: 4583 Number of sequences better than 10.0: 16 Number of HSP's better than 10.0 without gapping: 4401 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4580 length of database: 80,573,946 effective HSP length: 104 effective length of database: 57,760,402 effective search space used: 3696665728 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
