Clone Name | rbart15d04 |
---|---|
Clone Library Name | barley_pub |
>emb|AM048829.1| Triticum aestivum mRNA for sialyltransferase-like protein (stv2 gene) Length = 1756 Score = 359 bits (181), Expect = 6e-96 Identities = 196/201 (97%) Strand = Plus / Minus Query: 165 aacggcacagctaccaaattgctgaggtacatatggtgatgtgtcagggagaaccaatga 224 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 623 aacggcacagctaccaaattgctgaggtacatatggtgatgtgtcagggagaaccaatga 564 Query: 225 aagcttcgccatgcaaagagttctgttcctgcacttattcagaaggattcctttgttgat 284 ||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct: 563 aagcttctccatgcaaagagttctgttcttgcacttattcagaaggattcctttgttgat 504 Query: 285 cctgcgccatgcatactcctcccagccatttggtaatgcatcaatgtactcttttgtgag 344 ||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||| Sbjct: 503 cctgcgccatgcatactcctcccagccatttggtagtgcatcaacgtactcttttgtgag 444 Query: 345 tgttgtggtactgttgcgaac 365 | ||||||||||||||||||| Sbjct: 443 tattgtggtactgttgcgaac 423 Score = 129 bits (65), Expect = 1e-26 Identities = 71/73 (97%) Strand = Plus / Minus Query: 422 ctcccatgaggccacagcttcgcagagattgaactcaaatgccagcccttcagactctcc 481 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct: 419 ctcccatgaggccacagcttcgcagagattgaactcaaatgccaacccttcagactctcc 360 Query: 482 agttattggatct 494 |||| |||||||| Sbjct: 359 agtttttggatct 347
>ref|XM_506687.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1217_F02.7 mRNA Length = 1859 Score = 196 bits (99), Expect = 5e-47 Identities = 174/199 (87%) Strand = Plus / Minus Query: 169 gcacagctaccaaattgctgaggtacatatggtgatgtgtcagggagaaccaatgaaagc 228 ||||| |||||||||||| ||||||||||||||| ||| ||||| ||||| |||||||| Sbjct: 600 gcacatctaccaaattgccgaggtacatatggtggtgtctcaggaagaactaatgaaagt 541 Query: 229 ttcgccatgcaaagagttctgttcctgcacttattcagaaggattcctttgttgatcctg 288 || ||||||||||||| |||||| |||||| |||||| |||||||||| ||||||||| Sbjct: 540 ttttccatgcaaagagtcctgttctggcacttgttcagatggattcctttattgatcctg 481 Query: 289 cgccatgcatactcctcccagccatttggtaatgcatcaatgtactcttttgtgagtgtt 348 |||||||||||||||||||| |||||||| || ||||| |||||||| ||||| ||| || Sbjct: 480 cgccatgcatactcctcccaaccatttggcaacgcatcgatgtactcctttgtaagtatt 421 Query: 349 gtggtactgttgcgaacct 367 || || || |||||||||| Sbjct: 420 gttgtgctattgcgaacct 402 Score = 81.8 bits (41), Expect = 2e-12 Identities = 71/81 (87%) Strand = Plus / Minus Query: 417 acctcctcccatgaggccacagcttcgcagagattgaactcaaatgccagcccttcagac 476 |||| ||||||||| ||||||||||| ||||||||||||||||||| | ||||||| Sbjct: 405 acctgctcccatgaagccacagcttcacagagattgaactcaaatgataaaccttcaggt 346 Query: 477 tctccagttattggatctttc 497 ||||||||| ||||||||||| Sbjct: 345 tctccagtttttggatctttc 325
>ref|XM_463893.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1801 Score = 196 bits (99), Expect = 5e-47 Identities = 174/199 (87%) Strand = Plus / Minus Query: 169 gcacagctaccaaattgctgaggtacatatggtgatgtgtcagggagaaccaatgaaagc 228 ||||| |||||||||||| ||||||||||||||| ||| ||||| ||||| |||||||| Sbjct: 631 gcacatctaccaaattgccgaggtacatatggtggtgtctcaggaagaactaatgaaagt 572 Query: 229 ttcgccatgcaaagagttctgttcctgcacttattcagaaggattcctttgttgatcctg 288 || ||||||||||||| |||||| |||||| |||||| |||||||||| ||||||||| Sbjct: 571 ttttccatgcaaagagtcctgttctggcacttgttcagatggattcctttattgatcctg 512 Query: 289 cgccatgcatactcctcccagccatttggtaatgcatcaatgtactcttttgtgagtgtt 348 |||||||||||||||||||| |||||||| || ||||| |||||||| ||||| ||| || Sbjct: 511 cgccatgcatactcctcccaaccatttggcaacgcatcgatgtactcctttgtaagtatt 452 Query: 349 gtggtactgttgcgaacct 367 || || || |||||||||| Sbjct: 451 gttgtgctattgcgaacct 433 Score = 81.8 bits (41), Expect = 2e-12 Identities = 71/81 (87%) Strand = Plus / Minus Query: 417 acctcctcccatgaggccacagcttcgcagagattgaactcaaatgccagcccttcagac 476 |||| ||||||||| ||||||||||| ||||||||||||||||||| | ||||||| Sbjct: 436 acctgctcccatgaagccacagcttcacagagattgaactcaaatgataaaccttcaggt 377 Query: 477 tctccagttattggatctttc 497 ||||||||| ||||||||||| Sbjct: 376 tctccagtttttggatctttc 356
>emb|AM048827.1| Saccharum officinarum mRNA for sialyltransferase-like protein (stv2 gene) Length = 1574 Score = 196 bits (99), Expect = 5e-47 Identities = 168/191 (87%) Strand = Plus / Minus Query: 169 gcacagctaccaaattgctgaggtacatatggtgatgtgtcagggagaaccaatgaaagc 228 ||||| ||||||||||| ||||| |||||||| ||||| ||||| ||||| | ||| ||| Sbjct: 631 gcacatctaccaaattggtgaggaacatatggagatgtctcaggtagaactagtgagagc 572 Query: 229 ttcgccatgcaaagagttctgttcctgcacttattcagaaggattcctttgttgatcctg 288 || |||||||||| |||||||| ||||||||||||||||||||||||||||||||| Sbjct: 571 ttttccatgcaaaggcttctgttctggcacttattcagaaggattcctttgttgatcctt 512 Query: 289 cgccatgcatactcctcccagccatttggtaatgcatcaatgtactcttttgtgagtgtt 348 | ||||||||||||||||||||||||||| || |||||||||||||| ||||||||| | Sbjct: 511 ctccatgcatactcctcccagccatttggcaaagcatcaatgtactcctttgtgagtact 452 Query: 349 gtggtactgtt 359 || |||||||| Sbjct: 451 gttgtactgtt 441 Score = 65.9 bits (33), Expect = 1e-07 Identities = 51/57 (89%) Strand = Plus / Minus Query: 417 acctcctcccatgaggccacagcttcgcagagattgaactcaaatgccagcccttca 473 |||| |||||||||||| ||||||||||| |||||||||||||| | ||| |||||| Sbjct: 436 acctgctcccatgaggctacagcttcgcacagattgaactcaaacgacagaccttca 380
>dbj|AK101004.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023147K09, full insert sequence Length = 1802 Score = 196 bits (99), Expect = 5e-47 Identities = 174/199 (87%) Strand = Plus / Minus Query: 169 gcacagctaccaaattgctgaggtacatatggtgatgtgtcagggagaaccaatgaaagc 228 ||||| |||||||||||| ||||||||||||||| ||| ||||| ||||| |||||||| Sbjct: 632 gcacatctaccaaattgccgaggtacatatggtggtgtctcaggaagaactaatgaaagt 573 Query: 229 ttcgccatgcaaagagttctgttcctgcacttattcagaaggattcctttgttgatcctg 288 || ||||||||||||| |||||| |||||| |||||| |||||||||| ||||||||| Sbjct: 572 ttttccatgcaaagagtcctgttctggcacttgttcagatggattcctttattgatcctg 513 Query: 289 cgccatgcatactcctcccagccatttggtaatgcatcaatgtactcttttgtgagtgtt 348 |||||||||||||||||||| |||||||| || ||||| |||||||| ||||| ||| || Sbjct: 512 cgccatgcatactcctcccaaccatttggcaacgcatcgatgtactcctttgtaagtatt 453 Query: 349 gtggtactgttgcgaacct 367 || || || |||||||||| Sbjct: 452 gttgtgctattgcgaacct 434 Score = 81.8 bits (41), Expect = 2e-12 Identities = 71/81 (87%) Strand = Plus / Minus Query: 417 acctcctcccatgaggccacagcttcgcagagattgaactcaaatgccagcccttcagac 476 |||| ||||||||| ||||||||||| ||||||||||||||||||| | ||||||| Sbjct: 437 acctgctcccatgaagccacagcttcacagagattgaactcaaatgataaaccttcaggt 378 Query: 477 tctccagttattggatctttc 497 ||||||||| ||||||||||| Sbjct: 377 tctccagtttttggatctttc 357
>dbj|AK064002.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-124-F12, full insert sequence Length = 1859 Score = 196 bits (99), Expect = 5e-47 Identities = 174/199 (87%) Strand = Plus / Minus Query: 169 gcacagctaccaaattgctgaggtacatatggtgatgtgtcagggagaaccaatgaaagc 228 ||||| |||||||||||| ||||||||||||||| ||| ||||| ||||| |||||||| Sbjct: 600 gcacatctaccaaattgccgaggtacatatggtggtgtctcaggaagaactaatgaaagt 541 Query: 229 ttcgccatgcaaagagttctgttcctgcacttattcagaaggattcctttgttgatcctg 288 || ||||||||||||| |||||| |||||| |||||| |||||||||| ||||||||| Sbjct: 540 ttttccatgcaaagagtcctgttctggcacttgttcagatggattcctttattgatcctg 481 Query: 289 cgccatgcatactcctcccagccatttggtaatgcatcaatgtactcttttgtgagtgtt 348 |||||||||||||||||||| |||||||| || ||||| |||||||| ||||| ||| || Sbjct: 480 cgccatgcatactcctcccaaccatttggcaacgcatcgatgtactcctttgtaagtatt 421 Query: 349 gtggtactgttgcgaacct 367 || || || |||||||||| Sbjct: 420 gttgtgctattgcgaacct 402 Score = 81.8 bits (41), Expect = 2e-12 Identities = 71/81 (87%) Strand = Plus / Minus Query: 417 acctcctcccatgaggccacagcttcgcagagattgaactcaaatgccagcccttcagac 476 |||| ||||||||| ||||||||||| ||||||||||||||||||| | ||||||| Sbjct: 405 acctgctcccatgaagccacagcttcacagagattgaactcaaatgataaaccttcaggt 346 Query: 477 tctccagttattggatctttc 497 ||||||||| ||||||||||| Sbjct: 345 tctccagtttttggatctttc 325
>emb|AM167921.1| Zea mays mRNA for sialyltransferase like protein (stv2 gene) Length = 1613 Score = 151 bits (76), Expect = 3e-33 Identities = 142/164 (86%) Strand = Plus / Minus Query: 196 tatggtgatgtgtcagggagaaccaatgaaagcttcgccatgcaaagagttctgttcctg 255 ||||||||||| ||||| ||||| | ||| ||||| ||||||| || |||||||| | Sbjct: 548 tatggtgatgtctcaggtagaactagtgagagcttttccatgcagaggcttctgttctgg 489 Query: 256 cacttattcagaaggattcctttgttgatcctgcgccatgcatactcctcccagccattt 315 ||||||||||||||||||||||||||||| || | ||||||||| ||||||||||||||| Sbjct: 488 cacttattcagaaggattcctttgttgattcttctccatgcatattcctcccagccattt 429 Query: 316 ggtaatgcatcaatgtactcttttgtgagtgttgtggtactgtt 359 || || |||||||||||||| ||||||||| ||| |||||||| Sbjct: 428 ggcaaagcatcaatgtactcctttgtgagtactgttgtactgtt 385 Score = 61.9 bits (31), Expect = 2e-06 Identities = 37/39 (94%) Strand = Plus / Minus Query: 422 ctcccatgaggccacagcttcgcagagattgaactcaaa 460 ||||||||||||||||||||| || |||||||||||||| Sbjct: 375 ctcccatgaggccacagcttcacacagattgaactcaaa 337
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 115 bits (58), Expect = 1e-22 Identities = 94/106 (88%) Strand = Plus / Minus Query: 264 cagaaggattcctttgttgatcctgcgccatgcatactcctcccagccatttggtaatgc 323 |||| |||||||||| ||||||||||||||||||||||||||||| |||||||| || || Sbjct: 963449 cagatggattcctttattgatcctgcgccatgcatactcctcccaaccatttggcaacgc 963390 Query: 324 atcaatgtactcttttgtgagtgttgtggtactgttgcgaacctag 369 ||| |||||||| ||||| ||| |||| || || |||||||||||| Sbjct: 963389 atcgatgtactcctttgtaagtattgttgtgctattgcgaacctag 963344 Score = 87.7 bits (44), Expect = 3e-14 Identities = 74/84 (88%) Strand = Plus / Minus Query: 169 gcacagctaccaaattgctgaggtacatatggtgatgtgtcagggagaaccaatgaaagc 228 ||||| |||||||||||| ||||||||||||||| ||| ||||| ||||| |||||||| Sbjct: 963635 gcacatctaccaaattgccgaggtacatatggtggtgtctcaggaagaactaatgaaagt 963576 Query: 229 ttcgccatgcaaagagttctgttc 252 || ||||||||||||| |||||| Sbjct: 963575 ttttccatgcaaagagtcctgttc 963552 Score = 83.8 bits (42), Expect = 5e-13 Identities = 72/82 (87%) Strand = Plus / Minus Query: 417 acctcctcccatgaggccacagcttcgcagagattgaactcaaatgccagcccttcagac 476 |||| |||||||||||| |||||||| ||||||||||||||||||| | ||||||| Sbjct: 1004113 acctgctcccatgaggctacagcttcacagagattgaactcaaatgataaaccttcaggt 1004054 Query: 477 tctccagttattggatctttct 498 ||||||||| |||||||||||| Sbjct: 1004053 tctccagtttttggatctttct 1004032 Score = 83.8 bits (42), Expect = 5e-13 Identities = 72/82 (87%) Strand = Plus / Minus Query: 417 acctcctcccatgaggccacagcttcgcagagattgaactcaaatgccagcccttcagac 476 |||| ||||||||| ||||||||||| ||||||||||||||||||| | ||||||| Sbjct: 963166 acctgctcccatgaagccacagcttcacagagattgaactcaaatgataaaccttcaggt 963107 Query: 477 tctccagttattggatctttct 498 ||||||||| |||||||||||| Sbjct: 963106 tctccagtttttggatctttct 963085
>dbj|AP004084.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1217_F02 Length = 118822 Score = 115 bits (58), Expect = 1e-22 Identities = 94/106 (88%) Strand = Plus / Minus Query: 264 cagaaggattcctttgttgatcctgcgccatgcatactcctcccagccatttggtaatgc 323 |||| |||||||||| ||||||||||||||||||||||||||||| |||||||| || || Sbjct: 34868 cagatggattcctttattgatcctgcgccatgcatactcctcccaaccatttggcaacgc 34809 Query: 324 atcaatgtactcttttgtgagtgttgtggtactgttgcgaacctag 369 ||| |||||||| ||||| ||| |||| || || |||||||||||| Sbjct: 34808 atcgatgtactcctttgtaagtattgttgtgctattgcgaacctag 34763 Score = 87.7 bits (44), Expect = 3e-14 Identities = 74/84 (88%) Strand = Plus / Minus Query: 169 gcacagctaccaaattgctgaggtacatatggtgatgtgtcagggagaaccaatgaaagc 228 ||||| |||||||||||| ||||||||||||||| ||| ||||| ||||| |||||||| Sbjct: 35054 gcacatctaccaaattgccgaggtacatatggtggtgtctcaggaagaactaatgaaagt 34995 Query: 229 ttcgccatgcaaagagttctgttc 252 || ||||||||||||| |||||| Sbjct: 34994 ttttccatgcaaagagtcctgttc 34971 Score = 83.8 bits (42), Expect = 5e-13 Identities = 72/82 (87%) Strand = Plus / Minus Query: 417 acctcctcccatgaggccacagcttcgcagagattgaactcaaatgccagcccttcagac 476 |||| |||||||||||| |||||||| ||||||||||||||||||| | ||||||| Sbjct: 75532 acctgctcccatgaggctacagcttcacagagattgaactcaaatgataaaccttcaggt 75473 Query: 477 tctccagttattggatctttct 498 ||||||||| |||||||||||| Sbjct: 75472 tctccagtttttggatctttct 75451 Score = 83.8 bits (42), Expect = 5e-13 Identities = 72/82 (87%) Strand = Plus / Minus Query: 417 acctcctcccatgaggccacagcttcgcagagattgaactcaaatgccagcccttcagac 476 |||| ||||||||| ||||||||||| ||||||||||||||||||| | ||||||| Sbjct: 34585 acctgctcccatgaagccacagcttcacagagattgaactcaaatgataaaccttcaggt 34526 Query: 477 tctccagttattggatctttct 498 ||||||||| |||||||||||| Sbjct: 34525 tctccagtttttggatctttct 34504
>ref|NM_202675.1| Arabidopsis thaliana sialyltransferase AT3G48820 transcript variant AT3G48820.2 mRNA, complete cds Length = 1705 Score = 87.7 bits (44), Expect = 3e-14 Identities = 71/80 (88%) Strand = Plus / Minus Query: 271 attcctttgttgatcctgcgccatgcatactcctcccagccatttggtaatgcatcaatg 330 |||||||| ||||| |||||||||||||| |||||||| ||||||||||| ||||||||| Sbjct: 430 attcctttattgattctgcgccatgcataatcctcccatccatttggtaaggcatcaatg 371 Query: 331 tactcttttgtgagtgttgt 350 || || || |||||| |||| Sbjct: 370 tattccttggtgagtattgt 351
>ref|NM_114741.2| Arabidopsis thaliana sialyltransferase/ transferase, transferring glycosyl groups AT3G48820 transcript variant AT3G48820.1 mRNA, complete cds Length = 1736 Score = 87.7 bits (44), Expect = 3e-14 Identities = 71/80 (88%) Strand = Plus / Minus Query: 271 attcctttgttgatcctgcgccatgcatactcctcccagccatttggtaatgcatcaatg 330 |||||||| ||||| |||||||||||||| |||||||| ||||||||||| ||||||||| Sbjct: 461 attcctttattgattctgcgccatgcataatcctcccatccatttggtaaggcatcaatg 402 Query: 331 tactcttttgtgagtgttgt 350 || || || |||||| |||| Sbjct: 401 tattccttggtgagtattgt 382
>gb|AY133816.1| Arabidopsis thaliana clone U19220 unknown protein (At3g48820) mRNA, complete cds Length = 1354 Score = 87.7 bits (44), Expect = 3e-14 Identities = 71/80 (88%) Strand = Plus / Minus Query: 271 attcctttgttgatcctgcgccatgcatactcctcccagccatttggtaatgcatcaatg 330 |||||||| ||||| |||||||||||||| |||||||| ||||||||||| ||||||||| Sbjct: 425 attcctttattgattctgcgccatgcataatcctcccatccatttggtaaggcatcaatg 366 Query: 331 tactcttttgtgagtgttgt 350 || || || |||||| |||| Sbjct: 365 tattccttggtgagtattgt 346
>gb|AY080589.1| Arabidopsis thaliana unknown protein (At3g48820) mRNA, complete cds Length = 1752 Score = 87.7 bits (44), Expect = 3e-14 Identities = 71/80 (88%) Strand = Plus / Minus Query: 271 attcctttgttgatcctgcgccatgcatactcctcccagccatttggtaatgcatcaatg 330 |||||||| ||||| |||||||||||||| |||||||| ||||||||||| ||||||||| Sbjct: 461 attcctttattgattctgcgccatgcataatcctcccatccatttggtaaggcatcaatg 402 Query: 331 tactcttttgtgagtgttgt 350 || || || |||||| |||| Sbjct: 401 tattccttggtgagtattgt 382
>emb|AL132963.1|ATT21J18 Arabidopsis thaliana DNA chromosome 3, BAC clone T21J18 Length = 82912 Score = 87.7 bits (44), Expect = 3e-14 Identities = 71/80 (88%) Strand = Plus / Plus Query: 271 attcctttgttgatcctgcgccatgcatactcctcccagccatttggtaatgcatcaatg 330 |||||||| ||||| |||||||||||||| |||||||| ||||||||||| ||||||||| Sbjct: 50429 attcctttattgattctgcgccatgcataatcctcccatccatttggtaaggcatcaatg 50488 Query: 331 tactcttttgtgagtgttgt 350 || || || |||||| |||| Sbjct: 50489 tattccttggtgagtattgt 50508 Score = 42.1 bits (21), Expect = 1.7 Identities = 33/37 (89%) Strand = Plus / Plus Query: 195 atatggtgatgtgtcagggagaaccaatgaaagcttc 231 |||||||| ||| ||||| || ||||||||||||||| Sbjct: 50163 atatggtggtgtttcaggaagcaccaatgaaagcttc 50199
>emb|BX824378.1|CNS0A6ZE Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH44ZE12 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1647 Score = 87.7 bits (44), Expect = 3e-14 Identities = 71/80 (88%) Strand = Plus / Minus Query: 271 attcctttgttgatcctgcgccatgcatactcctcccagccatttggtaatgcatcaatg 330 |||||||| ||||| |||||||||||||| |||||||| ||||||||||| ||||||||| Sbjct: 491 attcctttattgattctgcgccatgcataatcctcccatccatttggtaaggcatcaatg 432 Query: 331 tactcttttgtgagtgttgt 350 || || || |||||| |||| Sbjct: 431 tattccttggtgagtattgt 412
>emb|BX822312.1|CNS0A6ZT Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB28ZB08 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1569 Score = 87.7 bits (44), Expect = 3e-14 Identities = 71/80 (88%) Strand = Plus / Minus Query: 271 attcctttgttgatcctgcgccatgcatactcctcccagccatttggtaatgcatcaatg 330 |||||||| ||||| |||||||||||||| |||||||| ||||||||||| ||||||||| Sbjct: 429 attcctttattgattctgcgccatgcataatcctcccatccatttggtaaggcatcaatg 370 Query: 331 tactcttttgtgagtgttgt 350 || || || |||||| |||| Sbjct: 369 tattccttggtgagtattgt 350
>dbj|AP006392.1| Lotus japonicus genomic DNA, chromosome 4, clone:LjT39E03, TM0266, complete sequence Length = 113459 Score = 87.7 bits (44), Expect = 3e-14 Identities = 83/96 (86%) Strand = Plus / Plus Query: 273 tcctttgttgatcctgcgccatgcatactcctcccagccatttggtaatgcatcaatgta 332 |||||| |||||||| ||||||||||| |||||||| ||||||||||| | ||||||| | Sbjct: 49598 tcctttattgatcctacgccatgcatattcctcccatccatttggtaaagaatcaatgaa 49657 Query: 333 ctcttttgtgagtgttgtggtactgttgcgaaccta 368 ||| || |||||| | ||||||||||| || ||||| Sbjct: 49658 ctccttggtgagtatagtggtactgttccgcaccta 49693
>dbj|AP006098.1| Lotus japonicus genomic DNA, chromosome 4, clone:LjT10G08, TM0175, complete sequence Length = 108582 Score = 87.7 bits (44), Expect = 3e-14 Identities = 83/96 (86%) Strand = Plus / Plus Query: 273 tcctttgttgatcctgcgccatgcatactcctcccagccatttggtaatgcatcaatgta 332 |||||| |||||||| ||||||||||| |||||||| ||||||||||| | ||||||| | Sbjct: 589 tcctttattgatcctacgccatgcatattcctcccatccatttggtaaagaatcaatgaa 648 Query: 333 ctcttttgtgagtgttgtggtactgttgcgaaccta 368 ||| || |||||| | ||||||||||| || ||||| Sbjct: 649 ctccttggtgagtatagtggtactgttccgcaccta 684
>emb|AM048821.2| Lotus corniculatus var. japonicus mRNA for sialyltransferase-like protein (stv2 gene) Length = 1329 Score = 85.7 bits (43), Expect = 1e-13 Identities = 76/87 (87%) Strand = Plus / Minus Query: 273 tcctttgttgatcctgcgccatgcatactcctcccagccatttggtaatgcatcaatgta 332 |||||| |||||||| ||||||||||| |||||||| ||||||||||| | ||||||| | Sbjct: 429 tcctttattgatcctacgccatgcatattcctcccatccatttggtaaagaatcaatgaa 370 Query: 333 ctcttttgtgagtgttgtggtactgtt 359 ||| || |||||| | ||||||||||| Sbjct: 369 ctccttggtgagtatagtggtactgtt 343
>gb|BT014123.1| Lycopersicon esculentum clone 133231F, mRNA sequence Length = 1937 Score = 81.8 bits (41), Expect = 2e-12 Identities = 62/69 (89%) Strand = Plus / Minus Query: 291 ccatgcatactcctcccagccatttggtaatgcatcaatgtactcttttgtgagtgttgt 350 ||||||||| |||||||| |||||||||| |||||||||||||| ||||||||| ||| Sbjct: 560 ccatgcatagtcctcccatccatttggtagggcatcaatgtactcctttgtgagtactgt 501 Query: 351 ggtactgtt 359 ||||||||| Sbjct: 500 ggtactgtt 492
>emb|AM048816.1| Glycine max mRNA for sialyltransferase-like protein (stv2a gene) Length = 1552 Score = 81.8 bits (41), Expect = 2e-12 Identities = 77/89 (86%) Strand = Plus / Minus Query: 271 attcctttgttgatcctgcgccatgcatactcctcccagccatttggtaatgcatcaatg 330 |||||||| |||||||| ||||||||||| |||||||| ||||||||||| | ||||||| Sbjct: 516 attcctttattgatcctacgccatgcatattcctcccatccatttggtaaagaatcaatg 457 Query: 331 tactcttttgtgagtgttgtggtactgtt 359 | || || |||||| | ||||||||||| Sbjct: 456 aattccttggtgagtatagtggtactgtt 428 Score = 48.1 bits (24), Expect = 0.028 Identities = 39/44 (88%) Strand = Plus / Minus Query: 196 tatggtgatgtgtcagggagaaccaatgaaagcttcgccatgca 239 ||||||| ||| ||||||||||||| |||||| ||| ||||||| Sbjct: 591 tatggtggtgtttcagggagaaccagtgaaagtttctccatgca 548
>emb|AM048817.1| Glycine max mRNA for sialyltransferase-like protein (stv2b gene) Length = 1585 Score = 73.8 bits (37), Expect = 5e-10 Identities = 76/89 (85%) Strand = Plus / Minus Query: 271 attcctttgttgatcctgcgccatgcatactcctcccagccatttggtaatgcatcaatg 330 |||||||| |||||||| ||||||||||| |||||||| ||||||||||| | ||||||| Sbjct: 549 attcctttattgatcctacgccatgcatattcctcccatccatttggtaaagaatcaatg 490 Query: 331 tactcttttgtgagtgttgtggtactgtt 359 | || || || ||| | ||||||||||| Sbjct: 489 aattccttggtaagtatagtggtactgtt 461 Score = 48.1 bits (24), Expect = 0.028 Identities = 39/44 (88%) Strand = Plus / Minus Query: 196 tatggtgatgtgtcagggagaaccaatgaaagcttcgccatgca 239 ||||||| ||| ||||||||||||| |||||| ||| ||||||| Sbjct: 624 tatggtggtgtttcagggagaaccagtgaaagtttctccatgca 581
>gb|AC131731.4| Mus musculus BAC clone RP23-117K10 from 3, complete sequence Length = 200232 Score = 48.1 bits (24), Expect = 0.028 Identities = 24/24 (100%) Strand = Plus / Plus Query: 414 cacacctcctcccatgaggccaca 437 |||||||||||||||||||||||| Sbjct: 45804 cacacctcctcccatgaggccaca 45827 Score = 40.1 bits (20), Expect = 6.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 414 cacacctcctcccatgaggccaca 437 |||||||||||||||||| ||||| Sbjct: 45824 cacacctcctcccatgagcccaca 45847
>gb|AC154503.3| Mus musculus BAC clone RP24-89J21 from chromosome 13, complete sequence Length = 176432 Score = 46.1 bits (23), Expect = 0.11 Identities = 23/23 (100%) Strand = Plus / Plus Query: 415 acacctcctcccatgaggccaca 437 ||||||||||||||||||||||| Sbjct: 86520 acacctcctcccatgaggccaca 86542
>gb|AC154725.3| Mus musculus BAC clone RP23-125L8 from chromosome 13, complete sequence Length = 204262 Score = 46.1 bits (23), Expect = 0.11 Identities = 23/23 (100%) Strand = Plus / Plus Query: 415 acacctcctcccatgaggccaca 437 ||||||||||||||||||||||| Sbjct: 14537 acacctcctcccatgaggccaca 14559
>gb|AC164614.3| Mus musculus BAC clone RP23-337L12 from chromosome 9, complete sequence Length = 215002 Score = 44.1 bits (22), Expect = 0.44 Identities = 22/22 (100%) Strand = Plus / Minus Query: 447 agattgaactcaaatgccagcc 468 |||||||||||||||||||||| Sbjct: 64266 agattgaactcaaatgccagcc 64245
>gb|AC127569.4| Mus musculus BAC clone RP24-216E20 from 9, complete sequence Length = 168588 Score = 44.1 bits (22), Expect = 0.44 Identities = 22/22 (100%) Strand = Plus / Plus Query: 447 agattgaactcaaatgccagcc 468 |||||||||||||||||||||| Sbjct: 135180 agattgaactcaaatgccagcc 135201
>ref|XM_847023.1| PREDICTED: Canis familiaris similar to SoxLZ/Sox6 leucine zipper binding protein (LOC609707), mRNA Length = 816 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 10 catgatccatatatcaaaatt 30 ||||||||||||||||||||| Sbjct: 688 catgatccatatatcaaaatt 708
>gb|AC107611.6| Rattus norvegicus 10 BAC CH230-195I24 (Children's Hospital Oakland Research Institute) complete sequence Length = 211076 Score = 42.1 bits (21), Expect = 1.7 Identities = 27/29 (93%) Strand = Plus / Minus Query: 414 cacacctcctcccatgaggccacagcttc 442 |||||||||||| ||||||||||| |||| Sbjct: 32005 cacacctcctccaatgaggccacaccttc 31977
>emb|AL356072.21| Human DNA sequence from clone RP11-141M15 on chromosome 1 Contains the DNB5 gene for deleted in neuroblastoma 5 and the 3' end of the RERE gene for arginine-glutamic acid dipeptide (RE) repeats (KIAA0458), complete sequence Length = 122331 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 223 gaaagcttcgccatgcaaaga 243 ||||||||||||||||||||| Sbjct: 67427 gaaagcttcgccatgcaaaga 67407
>gb|AC164561.2| Mus musculus BAC clone RP23-187G5 from chromosome 12, complete sequence Length = 210186 Score = 42.1 bits (21), Expect = 1.7 Identities = 27/29 (93%) Strand = Plus / Plus Query: 414 cacacctcctcccatgaggccacagcttc 442 |||||||||||| ||||||||||| |||| Sbjct: 111192 cacacctcctccaatgaggccacaccttc 111220
>emb|Z92788.1|CEF53B8 Caenorhabditis elegans Cosmid F53B8, complete sequence Length = 17439 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 405 cataaaatgcacacctcctcc 425 ||||||||||||||||||||| Sbjct: 7928 cataaaatgcacacctcctcc 7908
>emb|CT033780.10| Mouse DNA sequence from clone RP24-329E14 on chromosome 12, complete sequence Length = 205515 Score = 42.1 bits (21), Expect = 1.7 Identities = 27/29 (93%) Strand = Plus / Plus Query: 414 cacacctcctcccatgaggccacagcttc 442 |||||||||||| ||||||||||| |||| Sbjct: 193473 cacacctcctccaatgaggccacaccttc 193501
>emb|AL929042.5| Mouse DNA sequence from clone RP23-91K11 on chromosome 2, complete sequence Length = 138491 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Plus Query: 413 gcacacctcctcccatgaggccaca 437 |||||| |||||||||||||||||| Sbjct: 75400 gcacacttcctcccatgaggccaca 75424
>emb|AL604043.11| Mouse DNA sequence from clone RP23-391H8 on chromosome 11, complete sequence Length = 221374 Score = 42.1 bits (21), Expect = 1.7 Identities = 27/29 (93%) Strand = Plus / Minus Query: 414 cacacctcctcccatgaggccacagcttc 442 |||||||||||| ||||||||||| |||| Sbjct: 6084 cacacctcctccaatgaggccacaccttc 6056
>gb|AC118255.32| Mus musculus chromosome 8, clone RP24-89A4, complete sequence Length = 200858 Score = 40.1 bits (20), Expect = 6.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 414 cacacctcctcccatgaggccaca 437 |||||||||||| ||||||||||| Sbjct: 128406 cacacctcctccaatgaggccaca 128429
>gb|AC124227.21| Mus musculus chromosome 1, clone RP23-118M13, complete sequence Length = 220762 Score = 40.1 bits (20), Expect = 6.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 414 cacacctcctcccatgaggccaca 437 ||||||||||||||| |||||||| Sbjct: 149244 cacacctcctcccataaggccaca 149221
>gb|AC127554.4| Mus musculus BAC clone RP24-323K23 from chromosome 8, complete sequence Length = 178416 Score = 40.1 bits (20), Expect = 6.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 414 cacacctcctcccatgaggccaca 437 |||||||||||| ||||||||||| Sbjct: 110448 cacacctcctccaatgaggccaca 110425
>gb|AC129179.3| Mus musculus BAC clone RP23-240C24 from chromosome 18, complete sequence Length = 208462 Score = 40.1 bits (20), Expect = 6.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 414 cacacctcctcccatgaggccaca 437 ||||||||||||||| |||||||| Sbjct: 19271 cacacctcctcccataaggccaca 19248
>gb|AC127369.4| Mus musculus BAC clone RP23-26A15 from 8, complete sequence Length = 211411 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 451 tgaactcaaatgccagccct 470 |||||||||||||||||||| Sbjct: 21487 tgaactcaaatgccagccct 21506
>gb|AC115119.5| Mus musculus BAC clone RP23-87M19 from 18, complete sequence Length = 174491 Score = 40.1 bits (20), Expect = 6.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 414 cacacctcctcccatgaggccaca 437 ||||||||||||||| |||||||| Sbjct: 172002 cacacctcctcccataaggccaca 171979
>gb|AC006507.21| Mus musculus strain 129S6/SvEvTac clone rp21-580p20 map 10, complete sequence Length = 185664 Score = 40.1 bits (20), Expect = 6.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 414 cacacctcctcccatgaggccaca 437 |||||||||||| ||||||||||| Sbjct: 98390 cacacctcctccaatgaggccaca 98367 Score = 40.1 bits (20), Expect = 6.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 414 cacacctcctcccatgaggccaca 437 |||||||||||| ||||||||||| Sbjct: 98370 cacacctcctccaatgaggccaca 98347
>gb|AC140851.12| Mus musculus strain C57BL/6J clone rp23-358m4, complete sequence Length = 214913 Score = 40.1 bits (20), Expect = 6.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 414 cacacctcctcccatgaggccaca 437 |||||||||||| ||||||||||| Sbjct: 85818 cacacctcctccaatgaggccaca 85795 Score = 40.1 bits (20), Expect = 6.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 414 cacacctcctcccatgaggccaca 437 |||||||||||| ||||||||||| Sbjct: 85798 cacacctcctccaatgaggccaca 85775
>gb|AC153499.7| Mus musculus 10 BAC RP23-478J15 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 207222 Score = 40.1 bits (20), Expect = 6.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 414 cacacctcctcccatgaggccaca 437 ||||||||||||||| |||||||| Sbjct: 48425 cacacctcctcccataaggccaca 48402
>gb|AC090647.6| Genomic sequence for Mus musculus, clone RP23-252I12, complete sequence Length = 139891 Score = 40.1 bits (20), Expect = 6.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 414 cacacctcctcccatgaggccaca 437 |||||||||||| ||||||||||| Sbjct: 16844 cacacctcctccaatgaggccaca 16867
>dbj|AK031115.1| Mus musculus 13 days embryo forelimb cDNA, RIKEN full-length enriched library, clone:5930406C12 product:unclassifiable, full insert sequence Length = 2772 Score = 40.1 bits (20), Expect = 6.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 414 cacacctcctcccatgaggccaca 437 |||||||||||| ||||||||||| Sbjct: 1484 cacacctcctccaatgaggccaca 1461
>gb|AC156283.6| Mus musculus 6 BAC RP24-327I4 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 172188 Score = 40.1 bits (20), Expect = 6.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 414 cacacctcctcccatgaggccaca 437 |||||||||||| ||||||||||| Sbjct: 166200 cacacctcctccaatgaggccaca 166223
>gb|AC132939.23| Mus musculus chromosome 5, clone RP24-91I11, complete sequence Length = 224918 Score = 40.1 bits (20), Expect = 6.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 414 cacacctcctcccatgaggccaca 437 |||||||||||| ||||||||||| Sbjct: 200294 cacacctcctccaatgaggccaca 200317
>emb|AL671173.12| Mouse DNA sequence from clone RP23-426N4 on chromosome 4, complete sequence Length = 201741 Score = 40.1 bits (20), Expect = 6.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 414 cacacctcctcccatgaggccaca 437 |||||||||||| ||||||||||| Sbjct: 99463 cacacctcctccgatgaggccaca 99486
>emb|AL928545.6| Mouse DNA sequence from clone RP23-218A13 on chromosome 2, complete sequence Length = 199257 Score = 40.1 bits (20), Expect = 6.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 414 cacacctcctcccatgaggccaca 437 |||||||||||| ||||||||||| Sbjct: 176882 cacacctcctccaatgaggccaca 176905 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,577,389 Number of Sequences: 3902068 Number of extensions: 3577389 Number of successful extensions: 81899 Number of sequences better than 10.0: 50 Number of HSP's better than 10.0 without gapping: 50 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 81751 Number of HSP's gapped (non-prelim): 148 length of query: 508 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 486 effective length of database: 17,147,199,772 effective search space: 8333539089192 effective search space used: 8333539089192 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)