ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart15c12
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1TRPL_CAEEL (P34586) Transient-receptor-potential-like protein (T... 28 4.4
2EX1_BUCAP (Q8K923) Exodeoxyribonuclease I (EC 3.1.11.1) (Exonucl... 27 9.9

>TRPL_CAEEL (P34586) Transient-receptor-potential-like protein (TRP homologous|
           cation channel protein 1)
          Length = 1027

 Score = 28.5 bits (62), Expect = 4.4
 Identities = 15/34 (44%), Positives = 19/34 (55%)
 Frame = +2

Query: 89  FQT*PKSALNQAIRGCM*PKNVKYCFLFI*IINS 190
           FQT P     Q   GCM     K+CF+F+ II+S
Sbjct: 536 FQTNPYLGPLQISLGCMLVDVAKFCFIFVLIISS 569



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>EX1_BUCAP (Q8K923) Exodeoxyribonuclease I (EC 3.1.11.1) (Exonuclease I) (DNA|
           deoxyribophosphodiesterase) (dRPase)
          Length = 482

 Score = 27.3 bits (59), Expect = 9.9
 Identities = 11/28 (39%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
 Frame = -1

Query: 86  IIGYDNLNYEYRL-HNLVYKNNLGGHVW 6
           IIGY+N+N++  +  N+ Y+N L  + W
Sbjct: 100 IIGYNNINFDDEITRNIFYRNFLDPYEW 127


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 41,077,212
Number of Sequences: 219361
Number of extensions: 674445
Number of successful extensions: 1167
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1158
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1167
length of database: 80,573,946
effective HSP length: 81
effective length of database: 62,805,705
effective search space used: 1507336920
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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