ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart15c09
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|BT018826.1| Zea mays clone EL01N0551B03.d mRNA sequence 60 6e-06
2gb|AY581836.1| Cynodon dactylon putative transcription factor ER... 60 6e-06
3gb|AY103951.1| Zea mays PCO106933 mRNA sequence 60 6e-06
4gb|AY108380.1| Zea mays PCO095978 mRNA sequence 58 2e-05
5ref|XM_468125.1| Oryza sativa (japonica cultivar-group), mRNA 56 9e-05
6ref|XM_507539.1| PREDICTED Oryza sativa (japonica cultivar-group... 56 9e-05
7ref|XM_507538.1| PREDICTED Oryza sativa (japonica cultivar-group... 56 9e-05
8ref|XM_507013.2| PREDICTED Oryza sativa (japonica cultivar-group... 56 9e-05
9gb|AF193803.1| Oryza sativa transcription factor EREBP1 mRNA, co... 56 9e-05
10dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 56 9e-05
11dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 56 9e-05
12dbj|AP004280.3| Oryza sativa (japonica cultivar-group) genomic D... 56 9e-05
13dbj|AP003514.3| Oryza sativa (japonica cultivar-group) genomic D... 56 9e-05
14dbj|AP004849.3| Oryza sativa (japonica cultivar-group) genomic D... 56 9e-05
15dbj|AK119885.1| Oryza sativa (japonica cultivar-group) cDNA clon... 56 9e-05
16dbj|AK119643.1| Oryza sativa (japonica cultivar-group) cDNA clon... 56 9e-05
17dbj|AK103783.1| Oryza sativa (japonica cultivar-group) cDNA clon... 56 9e-05
18dbj|AK069833.1| Oryza sativa (japonica cultivar-group) cDNA clon... 56 9e-05
19gb|AF190770.1|AF190770 Oryza sativa EREBP-like protein (tsh1) mR... 56 9e-05
20dbj|AK064027.1| Oryza sativa (japonica cultivar-group) cDNA clon... 56 9e-05
21dbj|AK060742.1| Oryza sativa (japonica cultivar-group) cDNA clon... 56 9e-05
22gb|AC146127.4| Pan troglodytes BAC clone RP43-23F10 from 7, comp... 44 0.36
23gb|AC146006.2| Pan troglodytes BAC clone RP43-165A19 from 7, com... 44 0.36
24gb|AC146483.2| Pan troglodytes BAC clone RP43-30K12 from 7, comp... 44 0.36
25gb|AC147020.2| Mus musculus BAC clone RP23-267A11 from chromosom... 40 5.6
26gb|AC124168.3| Mus musculus BAC clone RP23-143G9 from chromosome... 40 5.6
27gb|AC130540.4| Mus musculus BAC clone RP23-474I3 from chromosome... 40 5.6
28emb|AL662928.4| Human DNA sequence from clone RP11-92H11 on chro... 40 5.6
29gb|CP000319.1| Nitrobacter hamburgensis X14, complete genome 40 5.6
30gb|AC073173.7| Homo sapiens chromosome 10 clone RP11-183D3, comp... 40 5.6
31emb|BX294113.7| Zebrafish DNA sequence from clone DKEYP-73G8 in ... 40 5.6
32emb|BX950199.14| Zebrafish DNA sequence from clone CH211-215A11 ... 40 5.6
33gb|AC130547.5| Mus musculus BAC clone RP24-378G9 from 14, comple... 40 5.6 
>gb|BT018826.1| Zea mays clone EL01N0551B03.d mRNA sequence
          Length = 1835

 Score = 60.0 bits (30), Expect = 6e-06
 Identities = 36/38 (94%)
 Strand = Plus / Minus

                                                  
Query: 310  atgggcatgtcaccgaagctccaaaggtccatgttgct 347
            |||||||||||  |||||||||||||||||||||||||
Sbjct: 1258 atgggcatgtcctcgaagctccaaaggtccatgttgct 1221
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>gb|AY581836.1| Cynodon dactylon putative transcription factor EREBP1 mRNA, partial
           cds
          Length = 330

 Score = 60.0 bits (30), Expect = 6e-06
 Identities = 45/50 (90%)
 Strand = Plus / Minus

                                                             
Query: 310 atgggcatgtcaccgaagctccaaaggtccatgttgctaacgacatcctg 359
           |||||||||||| | |||||||| |||||||||||||| || ||||||||
Sbjct: 78  atgggcatgtcatcaaagctccagaggtccatgttgctgactacatcctg 29
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>gb|AY103951.1| Zea mays PCO106933 mRNA sequence
          Length = 2052

 Score = 60.0 bits (30), Expect = 6e-06
 Identities = 36/38 (94%)
 Strand = Plus / Minus

                                                  
Query: 310  atgggcatgtcaccgaagctccaaaggtccatgttgct 347
            |||||||||||  |||||||||||||||||||||||||
Sbjct: 1254 atgggcatgtcctcgaagctccaaaggtccatgttgct 1217
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>gb|AY108380.1| Zea mays PCO095978 mRNA sequence
          Length = 834

 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 68/81 (83%)
 Strand = Plus / Minus

                                                                       
Query: 309 gatgggcatgtcaccgaagctccaaaggtccatgttgctaacgacatcctgaggcacatc 368
           ||||||||||||| ||||| |||| |||||||| |||||| | | |||||| |   ||||
Sbjct: 500 gatgggcatgtcatcgaaggtccagaggtccatattgctaccaagatcctgtgatccatc 441

                                
Query: 369 aaaattcagaaggctatcaat 389
           ||  |||||||||||||||||
Sbjct: 440 aaggttcagaaggctatcaat 420
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>ref|XM_468125.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1484

 Score = 56.0 bits (28), Expect = 9e-05
 Identities = 43/48 (89%)
 Strand = Plus / Minus

                                                            
Query: 312  gggcatgtcaccgaagctccaaaggtccatgttgctaacgacatcctg 359
            |||||||||| | |||||||| |||||||||||||| || ||||||||
Sbjct: 1148 gggcatgtcatcaaagctccagaggtccatgttgctgacaacatcctg 1101
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>ref|XM_507539.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1311_D08.9 mRNA
          Length = 1585

 Score = 56.0 bits (28), Expect = 9e-05
 Identities = 43/48 (89%)
 Strand = Plus / Minus

                                                            
Query: 312  gggcatgtcaccgaagctccaaaggtccatgttgctaacgacatcctg 359
            |||||||||| | |||||||| |||||||||||||| || ||||||||
Sbjct: 1241 gggcatgtcatcaaagctccagaggtccatgttgctgacaacatcctg 1194
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>ref|XM_507538.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1311_D08.9 mRNA
          Length = 1687

 Score = 56.0 bits (28), Expect = 9e-05
 Identities = 43/48 (89%)
 Strand = Plus / Minus

                                                            
Query: 312  gggcatgtcaccgaagctccaaaggtccatgttgctaacgacatcctg 359
            |||||||||| | |||||||| |||||||||||||| || ||||||||
Sbjct: 1243 gggcatgtcatcaaagctccagaggtccatgttgctgacaacatcctg 1196
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>ref|XM_507013.2| PREDICTED Oryza sativa (japonica cultivar-group), OJ1311_D08.9 mRNA
          Length = 1602

 Score = 56.0 bits (28), Expect = 9e-05
 Identities = 43/48 (89%)
 Strand = Plus / Minus

                                                            
Query: 312  gggcatgtcaccgaagctccaaaggtccatgttgctaacgacatcctg 359
            |||||||||| | |||||||| |||||||||||||| || ||||||||
Sbjct: 1145 gggcatgtcatcaaagctccagaggtccatgttgctgacaacatcctg 1098
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>gb|AF193803.1| Oryza sativa transcription factor EREBP1 mRNA, complete cds
          Length = 1612

 Score = 56.0 bits (28), Expect = 9e-05
 Identities = 43/48 (89%)
 Strand = Plus / Minus

                                                            
Query: 312  gggcatgtcaccgaagctccaaaggtccatgttgctaacgacatcctg 359
            |||||||||| | |||||||| |||||||||||||| || ||||||||
Sbjct: 1176 gggcatgtcatcaaagctccataggtccatgttgctgacaacatcctg 1129
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
               sequence
          Length = 30731886

 Score = 56.0 bits (28), Expect = 9e-05
 Identities = 73/88 (82%)
 Strand = Plus / Minus

                                                                           
Query: 312     gggcatgtcaccgaagctccaaaggtccatgttgctaacgacatcctgaggcacatcaaa 371
               |||||||||| |||||||||||||||||||| | ||  | ||||||||||   ||||| |
Sbjct: 4744115 gggcatgtcatcgaagctccaaaggtccatgctactggccacatcctgagatccatcaga 4744056

                                           
Query: 372     attcagaaggctatcaatcggctcatcc 399
                 |||||||| | ||||||| |||||||
Sbjct: 4744055 gctcagaagggtgtcaatcgactcatcc 4744028
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 56.0 bits (28), Expect = 9e-05
 Identities = 43/48 (89%)
 Strand = Plus / Plus

                                                                
Query: 312      gggcatgtcaccgaagctccaaaggtccatgttgctaacgacatcctg 359
                |||||||||| | |||||||| |||||||||||||| || ||||||||
Sbjct: 33218835 gggcatgtcatcaaagctccagaggtccatgttgctgacaacatcctg 33218882
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>dbj|AP004280.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0648E08
          Length = 135175

 Score = 56.0 bits (28), Expect = 9e-05
 Identities = 73/88 (82%)
 Strand = Plus / Minus

                                                                         
Query: 312   gggcatgtcaccgaagctccaaaggtccatgttgctaacgacatcctgaggcacatcaaa 371
             |||||||||| |||||||||||||||||||| | ||  | ||||||||||   ||||| |
Sbjct: 19519 gggcatgtcatcgaagctccaaaggtccatgctactggccacatcctgagatccatcaga 19460

                                         
Query: 372   attcagaaggctatcaatcggctcatcc 399
               |||||||| | ||||||| |||||||
Sbjct: 19459 gctcagaagggtgtcaatcgactcatcc 19432
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>dbj|AP003514.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
              clone:P0698A06
          Length = 156514

 Score = 56.0 bits (28), Expect = 9e-05
 Identities = 73/88 (82%)
 Strand = Plus / Minus

                                                                          
Query: 312    gggcatgtcaccgaagctccaaaggtccatgttgctaacgacatcctgaggcacatcaaa 371
              |||||||||| |||||||||||||||||||| | ||  | ||||||||||   ||||| |
Sbjct: 106714 gggcatgtcatcgaagctccaaaggtccatgctactggccacatcctgagatccatcaga 106655

                                          
Query: 372    attcagaaggctatcaatcggctcatcc 399
                |||||||| | ||||||| |||||||
Sbjct: 106654 gctcagaagggtgtcaatcgactcatcc 106627
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>dbj|AP004849.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1311_D08
          Length = 163702

 Score = 56.0 bits (28), Expect = 9e-05
 Identities = 43/48 (89%)
 Strand = Plus / Plus

                                                             
Query: 312   gggcatgtcaccgaagctccaaaggtccatgttgctaacgacatcctg 359
             |||||||||| | |||||||| |||||||||||||| || ||||||||
Sbjct: 48144 gggcatgtcatcaaagctccagaggtccatgttgctgacaacatcctg 48191
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>dbj|AK119885.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-179-H02, full
            insert sequence
          Length = 1484

 Score = 56.0 bits (28), Expect = 9e-05
 Identities = 43/48 (89%)
 Strand = Plus / Minus

                                                            
Query: 312  gggcatgtcaccgaagctccaaaggtccatgttgctaacgacatcctg 359
            |||||||||| | |||||||| |||||||||||||| || ||||||||
Sbjct: 1148 gggcatgtcatcaaagctccagaggtccatgttgctgacaacatcctg 1101
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>dbj|AK119643.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-130-F11, full
            insert sequence
          Length = 1587

 Score = 56.0 bits (28), Expect = 9e-05
 Identities = 43/48 (89%)
 Strand = Plus / Minus

                                                            
Query: 312  gggcatgtcaccgaagctccaaaggtccatgttgctaacgacatcctg 359
            |||||||||| | |||||||| |||||||||||||| || ||||||||
Sbjct: 1242 gggcatgtcatcaaagctccagaggtccatgttgctgacaacatcctg 1195
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>dbj|AK103783.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033145H23, full
            insert sequence
          Length = 1689

 Score = 56.0 bits (28), Expect = 9e-05
 Identities = 43/48 (89%)
 Strand = Plus / Minus

                                                            
Query: 312  gggcatgtcaccgaagctccaaaggtccatgttgctaacgacatcctg 359
            |||||||||| | |||||||| |||||||||||||| || ||||||||
Sbjct: 1244 gggcatgtcatcaaagctccagaggtccatgttgctgacaacatcctg 1197
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>dbj|AK069833.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023031B06, full
            insert sequence
          Length = 1677

 Score = 56.0 bits (28), Expect = 9e-05
 Identities = 73/88 (82%)
 Strand = Plus / Minus

                                                                        
Query: 312  gggcatgtcaccgaagctccaaaggtccatgttgctaacgacatcctgaggcacatcaaa 371
            |||||||||| |||||||||||||||||||| | ||  | ||||||||||   ||||| |
Sbjct: 1149 gggcatgtcatcgaagctccaaaggtccatgctactggccacatcctgagatccatcaga 1090

                                        
Query: 372  attcagaaggctatcaatcggctcatcc 399
              |||||||| | ||||||| |||||||
Sbjct: 1089 gctcagaagggtgtcaatcgactcatcc 1062
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>gb|AF190770.1|AF190770 Oryza sativa EREBP-like protein (tsh1) mRNA, complete cds
          Length = 1597

 Score = 56.0 bits (28), Expect = 9e-05
 Identities = 73/88 (82%)
 Strand = Plus / Minus

                                                                        
Query: 312  gggcatgtcaccgaagctccaaaggtccatgttgctaacgacatcctgaggcacatcaaa 371
            |||||||||| |||||||||||||||||||| | ||  | ||||||||||   ||||| |
Sbjct: 1162 gggcatgtcatcgaagctccaaaggtccatgctactggccacatcctgagatccatcaga 1103

                                        
Query: 372  attcagaaggctatcaatcggctcatcc 399
              |||||||| | ||||||| |||||||
Sbjct: 1102 gctcagaagggtgtcaatcgactcatcc 1075
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>dbj|AK064027.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-125-B02, full
            insert sequence
          Length = 1603

 Score = 56.0 bits (28), Expect = 9e-05
 Identities = 43/48 (89%)
 Strand = Plus / Minus

                                                            
Query: 312  gggcatgtcaccgaagctccaaaggtccatgttgctaacgacatcctg 359
            |||||||||| | |||||||| |||||||||||||| || ||||||||
Sbjct: 1146 gggcatgtcatcaaagctccagaggtccatgttgctgacaacatcctg 1099
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>dbj|AK060742.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-032-E01, full
            insert sequence
          Length = 1591

 Score = 56.0 bits (28), Expect = 9e-05
 Identities = 73/88 (82%)
 Strand = Plus / Minus

                                                                        
Query: 312  gggcatgtcaccgaagctccaaaggtccatgttgctaacgacatcctgaggcacatcaaa 371
            |||||||||| |||||||||||||||||||| | ||  | ||||||||||   ||||| |
Sbjct: 1188 gggcatgtcatcgaagctccaaaggtccatgctactggccacatcctgagatccatcaga 1129

                                        
Query: 372  attcagaaggctatcaatcggctcatcc 399
              |||||||| | ||||||| |||||||
Sbjct: 1128 gctcagaagggtgtcaatcgactcatcc 1101
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>gb|AC146127.4| Pan troglodytes BAC clone RP43-23F10 from 7, complete sequence
          Length = 190149

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 141   aaaagggttgattacaaaaggg 162
             ||||||||||||||||||||||
Sbjct: 46674 aaaagggttgattacaaaaggg 46695
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>gb|AC146006.2| Pan troglodytes BAC clone RP43-165A19 from 7, complete sequence
          Length = 211780

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 141    aaaagggttgattacaaaaggg 162
              ||||||||||||||||||||||
Sbjct: 193392 aaaagggttgattacaaaaggg 193371
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>gb|AC146483.2| Pan troglodytes BAC clone RP43-30K12 from 7, complete sequence
          Length = 208066

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 141    aaaagggttgattacaaaaggg 162
              ||||||||||||||||||||||
Sbjct: 111018 aaaagggttgattacaaaaggg 111039
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>gb|AC147020.2| Mus musculus BAC clone RP23-267A11 from chromosome 18, complete sequence
          Length = 204727

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 38     ttcacattcagaaatggtag 57
              ||||||||||||||||||||
Sbjct: 101237 ttcacattcagaaatggtag 101256
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>gb|AC124168.3| Mus musculus BAC clone RP23-143G9 from chromosome 18, complete sequence
          Length = 203187

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 38    ttcacattcagaaatggtag 57
             ||||||||||||||||||||
Sbjct: 26310 ttcacattcagaaatggtag 26329
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>gb|AC130540.4| Mus musculus BAC clone RP23-474I3 from chromosome 14, complete sequence
          Length = 201412

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 192   cttggacataagcatatgat 211
             ||||||||||||||||||||
Sbjct: 35463 cttggacataagcatatgat 35482
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>emb|AL662928.4| Human DNA sequence from clone RP11-92H11 on chromosome 1, complete
             sequence
          Length = 88568

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 201   aagcatatgatagccgaagttgac 224
             ||||| ||||||||||||||||||
Sbjct: 18170 aagcaaatgatagccgaagttgac 18193
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>gb|CP000319.1| Nitrobacter hamburgensis X14, complete genome
          Length = 4406967

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 253     ctcattccctttgtcctgat 272
               ||||||||||||||||||||
Sbjct: 1474984 ctcattccctttgtcctgat 1475003
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>gb|AC073173.7| Homo sapiens chromosome 10 clone RP11-183D3, complete sequence
          Length = 114611

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 37    attcacattcagaaatggta 56
             ||||||||||||||||||||
Sbjct: 74584 attcacattcagaaatggta 74565
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>emb|BX294113.7| Zebrafish DNA sequence from clone DKEYP-73G8 in linkage group 24,
              complete sequence
          Length = 199820

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 37     attcacattcagaaatggta 56
              ||||||||||||||||||||
Sbjct: 192824 attcacattcagaaatggta 192843
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>emb|BX950199.14| Zebrafish DNA sequence from clone CH211-215A11 in linkage group 24,
             complete sequence
          Length = 213091

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 37    attcacattcagaaatggta 56
             ||||||||||||||||||||
Sbjct: 81104 attcacattcagaaatggta 81085
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>gb|AC130547.5| Mus musculus BAC clone RP24-378G9 from 14, complete sequence
          Length = 163269

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 192  cttggacataagcatatgat 211
            ||||||||||||||||||||
Sbjct: 2926 cttggacataagcatatgat 2907


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,480,198
Number of Sequences: 3902068
Number of extensions: 3480198
Number of successful extensions: 57044
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 56930
Number of HSP's gapped (non-prelim): 113
length of query: 418
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 396
effective length of database: 17,147,199,772
effective search space: 6790291109712
effective search space used: 6790291109712
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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