ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart15c03
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AY677177.1| Hordeum vulgare UDP-D-glucuronate decarboxylase (... 1015 0.0
2emb|AJ295156.1|PCO295156 Phragmites communis mRNA for d-TDP-gluc... 283 3e-73
3gb|AY104952.1| Zea mays PCO092342 mRNA sequence 236 6e-59
4dbj|AB079064.1| Oryza sativa (japonica cultivar-group) UXS-3 mRN... 214 2e-52
5dbj|AK100908.1| Oryza sativa (japonica cultivar-group) cDNA clon... 214 2e-52
6dbj|AK060031.1| Oryza sativa (japonica cultivar-group) cDNA clon... 214 2e-52
7gb|BT019083.1| Zea mays clone Contig672.F mRNA sequence 196 5e-47
8dbj|AK061632.1| Oryza sativa (japonica cultivar-group) cDNA clon... 180 3e-42
9gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 165 2e-37
10gb|AC083942.8| Genomic sequence for Oryza sativa, Nipponbare str... 165 2e-37
11dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 165 2e-37
12gb|U82433.1|PAU82433 Prunus armeniaca thymidine diphospho-glucos... 74 5e-10
13gb|AY922315.1| Populus tomentosa UDP-glucuronic acid decarboxyla... 62 2e-06
14gb|AY619950.1| Nicotiana tabacum UDP-glucuronate decarboxylase 1... 52 0.002
15ref|NM_114511.2| Arabidopsis thaliana UXS5; catalytic AT3G46440 ... 46 0.11
16ref|NM_001035743.1| Arabidopsis thaliana UXS5; catalytic AT3G464... 46 0.11
17ref|NM_116149.2| Arabidopsis thaliana unknown protein AT3G62840 ... 46 0.11
18ref|NM_116148.1| Arabidopsis thaliana UXS2 (UDP-GLUCURONIC ACID ... 46 0.11
19gb|AY143897.1| Arabidopsis thaliana At3g62830/F26K9_260 mRNA, co... 46 0.11
20gb|AY096586.1| Arabidopsis thaliana putative dTDP-glucose 4-6-de... 46 0.11
21gb|AY072098.1| Arabidopsis thaliana putative dTDP-glucose 4-6-de... 46 0.11
22emb|AL162651.1|ATF26K9 Arabidopsis thaliana DNA chromosome 3, BA... 46 0.11
23emb|AL133298.1|ATF18L15 Arabidopsis thaliana DNA chromosome 3, B... 46 0.11
24gb|AF361617.1| Arabidopsis thaliana AT3g62830/F26K9_260 mRNA, co... 46 0.11
25gb|AY050389.1| Arabidopsis thaliana AT3g62830/F26K9_260 mRNA, co... 46 0.11
26emb|BX823718.1|CNS0A7QP Arabidopsis thaliana Full-length cDNA Co... 46 0.11
27emb|BX824968.1|CNS0A6QT Arabidopsis thaliana Full-length cDNA Co... 46 0.11
28emb|BX822583.1|CNS0A63N Arabidopsis thaliana Full-length cDNA Co... 46 0.11
29emb|BX825822.1|CNS0A4P6 Arabidopsis thaliana Full-length cDNA Co... 46 0.11
30gb|AY087118.1| Arabidopsis thaliana clone 31901 mRNA, complete s... 46 0.11
31gb|AF387788.1| Arabidopsis thaliana UDP-glucuronic acid decarbox... 46 0.11
32emb|Z49239.1|ATD18MR A.thaliana mRNA for putative dTDP-glucose 4... 46 0.11
33gb|AC155339.1| Brassica rapa subsp. pekinensis chromosome Cytoge... 44 0.44
34gb|AC155335.1| Brassica rapa subsp. pekinensis chromosome Cytoge... 44 0.44
35gb|AC122912.2| Mus musculus BAC clone RP23-61E5 from 7, complete... 42 1.8
36gb|CP000108.1| Chlorobium chlorochromatii CaD3, complete genome 40 6.9
37gb|U23514.3| Caenorhabditis elegans cosmid F48E8, complete sequence 40 6.9
38gb|AC125125.4| Mus musculus BAC clone RP24-274E6 from chromosome... 40 6.9
39emb|AL592430.8| Human DNA sequence from clone RP11-388P9 on chro... 40 6.9
40emb|BX908396.13| Zebrafish DNA sequence from clone CH211-267G5 i... 40 6.9
41gb|AC110615.3| Homo sapiens BAC clone RP11-556N4 from 4, complet... 40 6.9
42gb|AC159135.11| Mus musculus 10 BAC RP23-184H24 (Roswell Park Ca... 40 6.9
43gb|AC099760.5| Mus musculus BAC clone RP23-122E16 from chromosom... 40 6.9
44gb|AC159335.10| Mus musculus 10 BAC RP24-447O4 (Roswell Park Can... 40 6.9
45emb|CT025908.12| Zebrafish DNA sequence from clone CH211-163B1 i... 40 6.9
46gb|AY108129.1| Zea mays PCO069672 mRNA sequence 40 6.9
47emb|CT009662.23| Mouse DNA sequence from clone CH29-511O15 on ch... 40 6.9
48emb|AL929024.9| Mouse DNA sequence from clone RP23-480H10 on chr... 40 6.9 
>gb|AY677177.1| Hordeum vulgare UDP-D-glucuronate decarboxylase (UXS1) mRNA, complete
            cds
          Length = 1433

 Score = 1015 bits (512), Expect = 0.0
 Identities = 512/512 (100%)
 Strand = Plus / Minus

                                                                        
Query: 1    aataacaagcccaaaaatggcaccaacgttgctataattgatttagggaagtgcataggc 60
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1414 aataacaagcccaaaaatggcaccaacgttgctataattgatttagggaagtgcataggc 1355

                                                                        
Query: 61   taaaacattaggaccacaagttccgcaaaaagcgggagtaatacaaacagccaggccttg 120
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1354 taaaacattaggaccacaagttccgcaaaaagcgggagtaatacaaacagccaggccttg 1295

                                                                        
Query: 121  tatataaagtttctaataatacaatctttcaagtgaacgacaaaggtgtaattggtttat 180
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1294 tatataaagtttctaataatacaatctttcaagtgaacgacaaaggtgtaattggtttat 1235

                                                                        
Query: 181  tggaactcaaattccgtaacgaaacacagcaacgaatattgacgaacccacccaactatg 240
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1234 tggaactcaaattccgtaacgaaacacagcaacgaatattgacgaacccacccaactatg 1175

                                                                        
Query: 241  agtatgctctggcaaattggtgatgtacgccaaacgcagggaagtggccttaggccttgg 300
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1174 agtatgctctggcaaattggtgatgtacgccaaacgcagggaagtggccttaggccttgg 1115

                                                                        
Query: 301  ccttcttgggcactgccaaacgctcccggaagtcgtcctccatgagcaccaagccgtcac 360
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1114 ccttcttgggcactgccaaacgctcccggaagtcgtcctccatgagcaccaagccgtcac 1055

                                                                        
Query: 361  gtaggacgaccttgggctcccagtcaagaacctcctttgcctttgtgatgtcaggcttcc 420
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1054 gtaggacgaccttgggctcccagtcaagaacctcctttgcctttgtgatgtcaggcttcc 995

                                                                        
Query: 421  tctggcgagggtcatcaggagtgttctcagtcatcgtcactgtcacctctgggttgatca 480
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 994  tctggcgagggtcatcaggagtgttctcagtcatcgtcactgtcacctctgggttgatca 935

                                            
Query: 481  actccttcacgttctcagcaagttccagcatg 512
            ||||||||||||||||||||||||||||||||
Sbjct: 934  actccttcacgttctcagcaagttccagcatg 903
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>emb|AJ295156.1|PCO295156 Phragmites communis mRNA for d-TDP-glucose dehydratase (tgp gene)
          Length = 1562

 Score =  283 bits (143), Expect = 3e-73
 Identities = 203/223 (91%)
 Strand = Plus / Minus

                                                                        
Query: 290  ttaggccttggccttcttgggcactgccaaacgctcccggaagtcgtcctccatgagcac 349
            ||||||||| | || ||||||||| ||||  |||||||||||||| ||||||||||||||
Sbjct: 1291 ttaggccttagtctccttgggcacagccaggcgctcccggaagtcatcctccatgagcac 1232

                                                                        
Query: 350  caagccgtcacgtaggacgaccttgggctcccagtcaagaacctcctttgcctttgtgat 409
            |||||||||||| || |||||||| ||||||||  | ||||| ||||| |||||||||||
Sbjct: 1231 caagccgtcacgcagaacgaccttaggctcccaccccagaacttccttcgcctttgtgat 1172

                                                                        
Query: 410  gtcaggcttcctctggcgagggtcatcaggagtgttctcagtcatcgtcactgtcacctc 469
            ||| ||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||
Sbjct: 1171 gtctggcttcctctggcgaggatcatcaggagtgttctcggtcatcgtcactgtcacctc 1112

                                                       
Query: 470  tgggttgatcaactccttcacgttctcagcaagttccagcatg 512
            ||||||||||||||| ||||| |||||||||||||||||||||
Sbjct: 1111 tgggttgatcaactctttcactttctcagcaagttccagcatg 1069



 Score = 79.8 bits (40), Expect = 8e-12
 Identities = 61/68 (89%)
 Strand = Plus / Minus

                                                                        
Query: 137  taatacaatctttcaagtgaacgacaaaggtgtaattggtttattggaactcaaattccg 196
            |||||||||||||||| |||||||||| | |||| |  ||||||||||||||||||||||
Sbjct: 1419 taatacaatctttcaattgaacgacaacgatgtattcagtttattggaactcaaattccg 1360

                    
Query: 197  taacgaaa 204
            ||| ||||
Sbjct: 1359 taatgaaa 1352



 Score = 46.1 bits (23), Expect = 0.11
 Identities = 61/71 (85%), Gaps = 2/71 (2%)
 Strand = Plus / Minus

                                                                        
Query: 24   caacgttgctataattgatttagggaagtgcataggcta-aaacattaggaccacaagtt 82
            |||| |||||||||| |||||||||| || |||| |||| |||||| || ||||||||||
Sbjct: 1527 caacattgctataatcgatttaggga-gtacataagctacaaacataagtaccacaagtt 1469

                       
Query: 83   ccgcaaaaagc 93
            | | |||||||
Sbjct: 1468 ctgtaaaaagc 1458
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>gb|AY104952.1| Zea mays PCO092342 mRNA sequence
          Length = 1825

 Score =  236 bits (119), Expect = 6e-59
 Identities = 197/223 (88%)
 Strand = Plus / Minus

                                                                        
Query: 290  ttaggccttggccttcttgggcactgccaaacgctcccggaagtcgtcctccatgagcac 349
            |||||||||||  ||||||||||| ||||  ||||||||||| || ||||||||||||||
Sbjct: 1535 ttaggccttggttttcttgggcacggccaggcgctcccggaaatcatcctccatgagcac 1476

                                                                        
Query: 350  caagccgtcacgtaggacgaccttgggctcccagtcaagaacctcctttgcctttgtgat 409
            |||||||||    ||||||| ||||||||||||  | ||||| ||||||||||| |||||
Sbjct: 1475 caagccgtccttcaggacgatcttgggctcccaccctagaacttcctttgccttggtgat 1416

                                                                        
Query: 410  gtcaggcttcctctggcgagggtcatcaggagtgttctcagtcatcgtcactgtcacctc 469
            ||| |||||||||||||| || ||||||||||||||||| |||||||||||||| |  ||
Sbjct: 1415 gtccggcttcctctggcggggatcatcaggagtgttctcggtcatcgtcactgttatatc 1356

                                                       
Query: 470  tgggttgatcaactccttcacgttctcagcaagttccagcatg 512
            |||||| |||||||||||||| |||||||||||||||||||||
Sbjct: 1355 tgggttaatcaactccttcacattctcagcaagttccagcatg 1313



 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 64/75 (85%), Gaps = 1/75 (1%)
 Strand = Plus / Minus

                                                                        
Query: 131  ttctaataatacaatctttcaag-tgaacgacaaaggtgtaattggtttattggaactca 189
            ||||||| |||||||| |||||| ||| |||  ||||| || |  |||||||||||||||
Sbjct: 1684 ttctaatgatacaatccttcaaggtgatcgaagaaggtatattccgtttattggaactca 1625

                           
Query: 190  aattccgtaacgaaa 204
            |||||||||| ||||
Sbjct: 1624 aattccgtaatgaaa 1610
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>dbj|AB079064.1| Oryza sativa (japonica cultivar-group) UXS-3 mRNA for UDP-glucuronic
            acid decarboxylase, complete cds
          Length = 1053

 Score =  214 bits (108), Expect = 2e-52
 Identities = 171/192 (89%)
 Strand = Plus / Minus

                                                                        
Query: 321  cgctcccggaagtcgtcctccatgagcaccaagccgtcacgtaggacgaccttgggctcc 380
            ||||||||||| || || ||||||||||||||||| ||||| || |||| ||||||||||
Sbjct: 1022 cgctcccggaaatcatcttccatgagcaccaagccatcacgcagaacgatcttgggctcc 963

                                                                        
Query: 381  cagtcaagaacctcctttgcctttgtgatgtcaggcttcctctggcgagggtcatcagga 440
            ||  | | ||| |||||||||||||| ||||| ||||||||||| ||||| |||||||||
Sbjct: 962  caccccaaaacttcctttgcctttgtaatgtctggcttcctctgacgaggatcatcagga 903

                                                                        
Query: 441  gtgttctcagtcatcgtcactgtcacctctgggttgatcaactccttcacgttctcagca 500
            |||||||||||||| || || || |||||||||||||||||||||||||| |||||||||
Sbjct: 902  gtgttctcagtcattgtgacggtaacctctgggttgatcaactccttcacattctcagca 843

                        
Query: 501  agttccagcatg 512
            ||||||||||||
Sbjct: 842  agttccagcatg 831
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>dbj|AK100908.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023132F05, full
            insert sequence
          Length = 1811

 Score =  214 bits (108), Expect = 2e-52
 Identities = 195/224 (87%)
 Strand = Plus / Minus

                                                                        
Query: 289  cttaggccttggccttcttgggcactgccaaacgctcccggaagtcgtcctccatgagca 348
            ||||||||| |  |||||||||||||   |  ||||||||||| || || ||||||||||
Sbjct: 1542 cttaggcctggttcttcttgggcacttggaggcgctcccggaaatcatcttccatgagca 1483

                                                                        
Query: 349  ccaagccgtcacgtaggacgaccttgggctcccagtcaagaacctcctttgcctttgtga 408
            ||||||| ||||| || |||| ||||||||||||  | | ||| |||||||||||||| |
Sbjct: 1482 ccaagccatcacgcagaacgatcttgggctcccaccccaaaacttcctttgcctttgtaa 1423

                                                                        
Query: 409  tgtcaggcttcctctggcgagggtcatcaggagtgttctcagtcatcgtcactgtcacct 468
            |||| ||||||||||| ||||| ||||||||||||||||||||||| || || || ||||
Sbjct: 1422 tgtctggcttcctctgacgaggatcatcaggagtgttctcagtcattgtgacggtaacct 1363

                                                        
Query: 469  ctgggttgatcaactccttcacgttctcagcaagttccagcatg 512
            |||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 1362 ctgggttgatcaactccttcacattctcagcaagttccagcatg 1319



 Score = 40.1 bits (20), Expect = 6.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 24   caacgttgctataattgatttagg 47
            |||| |||||||||||||||||||
Sbjct: 1797 caacattgctataattgatttagg 1774



 Score = 40.1 bits (20), Expect = 6.9
 Identities = 35/40 (87%)
 Strand = Plus / Minus

                                                    
Query: 131  ttctaataatacaatctttcaagtgaacgacaaaggtgta 170
            ||||| ||| ||||| ||||| |||||| |||||||||||
Sbjct: 1692 ttctagtaacacaatatttcaggtgaacaacaaaggtgta 1653
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>dbj|AK060031.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-303-H02, full
            insert sequence
          Length = 1411

 Score =  214 bits (108), Expect = 2e-52
 Identities = 195/224 (87%)
 Strand = Plus / Minus

                                                                        
Query: 289  cttaggccttggccttcttgggcactgccaaacgctcccggaagtcgtcctccatgagca 348
            ||||||||| |  |||||||||||||   |  ||||||||||| || || ||||||||||
Sbjct: 1153 cttaggcctggttcttcttgggcacttggaggcgctcccggaaatcatcttccatgagca 1094

                                                                        
Query: 349  ccaagccgtcacgtaggacgaccttgggctcccagtcaagaacctcctttgcctttgtga 408
            ||||||| ||||| || |||| ||||||||||||  | | ||| |||||||||||||| |
Sbjct: 1093 ccaagccatcacgcagaacgatcttgggctcccaccccaaaacttcctttgcctttgtaa 1034

                                                                        
Query: 409  tgtcaggcttcctctggcgagggtcatcaggagtgttctcagtcatcgtcactgtcacct 468
            |||| ||||||||||| ||||| ||||||||||||||||||||||| || || || ||||
Sbjct: 1033 tgtctggcttcctctgacgaggatcatcaggagtgttctcagtcattgtgacggtaacct 974

                                                        
Query: 469  ctgggttgatcaactccttcacgttctcagcaagttccagcatg 512
            |||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 973  ctgggttgatcaactccttcacattctcagcaagttccagcatg 930



 Score = 40.1 bits (20), Expect = 6.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 24   caacgttgctataattgatttagg 47
            |||| |||||||||||||||||||
Sbjct: 1408 caacattgctataattgatttagg 1385



 Score = 40.1 bits (20), Expect = 6.9
 Identities = 35/40 (87%)
 Strand = Plus / Minus

                                                    
Query: 131  ttctaataatacaatctttcaagtgaacgacaaaggtgta 170
            ||||| ||| ||||| ||||| |||||| |||||||||||
Sbjct: 1303 ttctagtaacacaatatttcaggtgaacaacaaaggtgta 1264
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>gb|BT019083.1| Zea mays clone Contig672.F mRNA sequence
          Length = 958

 Score =  196 bits (99), Expect = 5e-47
 Identities = 168/191 (87%)
 Strand = Plus / Minus

                                                                       
Query: 322 gctcccggaagtcgtcctccatgagcaccaagccgtcacgtaggacgaccttgggctccc 381
           |||||||||| || ||||||||||||||||||||||| |  |||| ||  ||||||||||
Sbjct: 787 gctcccggaaatcatcctccatgagcaccaagccgtcccccaggaagattttgggctccc 728

                                                                       
Query: 382 agtcaagaacctcctttgcctttgtgatgtcaggcttcctctggcgagggtcatcaggag 441
           |  | | ||| |||||  |||||||||| || ||||||||||| || |||||||||||||
Sbjct: 727 atcccaaaacttccttcccctttgtgatatccggcttcctctgacgggggtcatcaggag 668

                                                                       
Query: 442 tgttctcagtcatcgtcactgtcacctctgggttgatcaactccttcacgttctcagcaa 501
           ||||||| ||||| ||||||||||| ||||||||||||||||||||||| ||||||||||
Sbjct: 667 tgttctcggtcattgtcactgtcacatctgggttgatcaactccttcacattctcagcaa 608

                      
Query: 502 gttccagcatg 512
           |||||||||||
Sbjct: 607 gttccagcatg 597



 Score = 42.1 bits (21), Expect = 1.8
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 180 ttggaactcaaattccgtaacgaaa 204
           |||||||||||||||||||| ||||
Sbjct: 921 ttggaactcaaattccgtaatgaaa 897
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>dbj|AK061632.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-036-A03, full
           insert sequence
          Length = 472

 Score =  180 bits (91), Expect = 3e-42
 Identities = 178/207 (85%)
 Strand = Plus / Minus

                                                                       
Query: 289 cttaggccttggccttcttgggcactgccaaacgctcccggaagtcgtcctccatgagca 348
           ||||||||| |  |||||||||||||   |  ||||||||||| || || ||||||||||
Sbjct: 207 cttaggcctggttcttcttgggcacttggaggcgctcccggaaatcatcttccatgagca 148

                                                                       
Query: 349 ccaagccgtcacgtaggacgaccttgggctcccagtcaagaacctcctttgcctttgtga 408
           ||||||| ||||| || |||| | ||||||||||  | | |||||||||||||||||| |
Sbjct: 147 ccaagccatcacgcagaacgatcctgggctcccaccccaaaacctcctttgcctttgtaa 88

                                                                       
Query: 409 tgtcaggcttcctctggcgagggtcatcaggagtgttctcagtcatcgtcactgtcacct 468
           |||| ||||||||||| ||||| ||||||||||||||||||||||| || || || ||||
Sbjct: 87  tgtctggcttcctctgacgaggatcatcaggagtgttctcagtcattgtgacggtaacct 28

                                      
Query: 469 ctgggttgatcaactccttcacgttct 495
           |||||||||||||||||||||| ||||
Sbjct: 27  ctgggttgatcaactccttcacattct 1



 Score = 40.1 bits (20), Expect = 6.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 24  caacgttgctataattgatttagg 47
           |||| |||||||||||||||||||
Sbjct: 462 caacattgctataattgatttagg 439



 Score = 40.1 bits (20), Expect = 6.9
 Identities = 35/40 (87%)
 Strand = Plus / Minus

                                                   
Query: 131 ttctaataatacaatctttcaagtgaacgacaaaggtgta 170
           ||||| ||| ||||| ||||| |||||| |||||||||||
Sbjct: 357 ttctagtaacacaatatttcaggtgaacaacaaaggtgta 318
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score =  165 bits (83), Expect = 2e-37
 Identities = 167/195 (85%)
 Strand = Plus / Minus

                                                                           
Query: 289     cttaggccttggccttcttgggcactgccaaacgctcccggaagtcgtcctccatgagca 348
               ||||||||| |  |||||||||||||   |  ||||||||||| || || ||||||||||
Sbjct: 9412292 cttaggcctggttcttcttgggcacttggaggcgctcccggaaatcatcttccatgagca 9412233

                                                                           
Query: 349     ccaagccgtcacgtaggacgaccttgggctcccagtcaagaacctcctttgcctttgtga 408
               ||||||| ||||| || |||| ||||||||||||  | | ||| |||||||||||||| |
Sbjct: 9412232 ccaagccatcacgcagaacgatcttgggctcccaccccaaaacttcctttgcctttgtaa 9412173

                                                                           
Query: 409     tgtcaggcttcctctggcgagggtcatcaggagtgttctcagtcatcgtcactgtcacct 468
               |||| ||||||||||| ||||| ||||||||||||||||||||||| || || || ||||
Sbjct: 9412172 tgtctggcttcctctgacgaggatcatcaggagtgttctcagtcattgtgacggtaacct 9412113

                              
Query: 469     ctgggttgatcaact 483
               |||||||||||||||
Sbjct: 9412112 ctgggttgatcaact 9412098



 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 30/31 (96%)
 Strand = Plus / Minus

                                              
Query: 482     ctccttcacgttctcagcaagttccagcatg 512
               ||||||||| |||||||||||||||||||||
Sbjct: 9412015 ctccttcacattctcagcaagttccagcatg 9411985



 Score = 40.1 bits (20), Expect = 6.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 24      caacgttgctataattgatttagg 47
               |||| |||||||||||||||||||
Sbjct: 9412547 caacattgctataattgatttagg 9412524



 Score = 40.1 bits (20), Expect = 6.9
 Identities = 35/40 (87%)
 Strand = Plus / Minus

                                                       
Query: 131     ttctaataatacaatctttcaagtgaacgacaaaggtgta 170
               ||||| ||| ||||| ||||| |||||| |||||||||||
Sbjct: 9412442 ttctagtaacacaatatttcaggtgaacaacaaaggtgta 9412403
to top
>gb|AC083942.8| Genomic sequence for Oryza sativa, Nipponbare strain, clone
              OSJNBa0002D01, from chromosome 3, complete sequence
          Length = 187589

 Score =  165 bits (83), Expect = 2e-37
 Identities = 167/195 (85%)
 Strand = Plus / Minus

                                                                          
Query: 289    cttaggccttggccttcttgggcactgccaaacgctcccggaagtcgtcctccatgagca 348
              ||||||||| |  |||||||||||||   |  ||||||||||| || || ||||||||||
Sbjct: 109692 cttaggcctggttcttcttgggcacttggaggcgctcccggaaatcatcttccatgagca 109633

                                                                          
Query: 349    ccaagccgtcacgtaggacgaccttgggctcccagtcaagaacctcctttgcctttgtga 408
              ||||||| ||||| || |||| ||||||||||||  | | ||| |||||||||||||| |
Sbjct: 109632 ccaagccatcacgcagaacgatcttgggctcccaccccaaaacttcctttgcctttgtaa 109573

                                                                          
Query: 409    tgtcaggcttcctctggcgagggtcatcaggagtgttctcagtcatcgtcactgtcacct 468
              |||| ||||||||||| ||||| ||||||||||||||||||||||| || || || ||||
Sbjct: 109572 tgtctggcttcctctgacgaggatcatcaggagtgttctcagtcattgtgacggtaacct 109513

                             
Query: 469    ctgggttgatcaact 483
              |||||||||||||||
Sbjct: 109512 ctgggttgatcaact 109498



 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 30/31 (96%)
 Strand = Plus / Minus

                                             
Query: 482    ctccttcacgttctcagcaagttccagcatg 512
              ||||||||| |||||||||||||||||||||
Sbjct: 109415 ctccttcacattctcagcaagttccagcatg 109385



 Score = 40.1 bits (20), Expect = 6.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 24     caacgttgctataattgatttagg 47
              |||| |||||||||||||||||||
Sbjct: 109947 caacattgctataattgatttagg 109924



 Score = 40.1 bits (20), Expect = 6.9
 Identities = 35/40 (87%)
 Strand = Plus / Minus

                                                      
Query: 131    ttctaataatacaatctttcaagtgaacgacaaaggtgta 170
              ||||| ||| ||||| ||||| |||||| |||||||||||
Sbjct: 109842 ttctagtaacacaatatttcaggtgaacaacaaaggtgta 109803
to top
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
               sequence
          Length = 36192742

 Score =  165 bits (83), Expect = 2e-37
 Identities = 167/195 (85%)
 Strand = Plus / Minus

                                                                           
Query: 289     cttaggccttggccttcttgggcactgccaaacgctcccggaagtcgtcctccatgagca 348
               ||||||||| |  |||||||||||||   |  ||||||||||| || || ||||||||||
Sbjct: 9410413 cttaggcctggttcttcttgggcacttggaggcgctcccggaaatcatcttccatgagca 9410354

                                                                           
Query: 349     ccaagccgtcacgtaggacgaccttgggctcccagtcaagaacctcctttgcctttgtga 408
               ||||||| ||||| || |||| ||||||||||||  | | ||| |||||||||||||| |
Sbjct: 9410353 ccaagccatcacgcagaacgatcttgggctcccaccccaaaacttcctttgcctttgtaa 9410294

                                                                           
Query: 409     tgtcaggcttcctctggcgagggtcatcaggagtgttctcagtcatcgtcactgtcacct 468
               |||| ||||||||||| ||||| ||||||||||||||||||||||| || || || ||||
Sbjct: 9410293 tgtctggcttcctctgacgaggatcatcaggagtgttctcagtcattgtgacggtaacct 9410234

                              
Query: 469     ctgggttgatcaact 483
               |||||||||||||||
Sbjct: 9410233 ctgggttgatcaact 9410219



 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 30/31 (96%)
 Strand = Plus / Minus

                                              
Query: 482     ctccttcacgttctcagcaagttccagcatg 512
               ||||||||| |||||||||||||||||||||
Sbjct: 9410136 ctccttcacattctcagcaagttccagcatg 9410106



 Score = 40.1 bits (20), Expect = 6.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 24      caacgttgctataattgatttagg 47
               |||| |||||||||||||||||||
Sbjct: 9410668 caacattgctataattgatttagg 9410645



 Score = 40.1 bits (20), Expect = 6.9
 Identities = 35/40 (87%)
 Strand = Plus / Minus

                                                       
Query: 131     ttctaataatacaatctttcaagtgaacgacaaaggtgta 170
               ||||| ||| ||||| ||||| |||||| |||||||||||
Sbjct: 9410563 ttctagtaacacaatatttcaggtgaacaacaaaggtgta 9410524
to top
>gb|U82433.1|PAU82433 Prunus armeniaca thymidine diphospho-glucose 4-6-dehydratase
           homolog mRNA, partial cds
          Length = 1012

 Score = 73.8 bits (37), Expect = 5e-10
 Identities = 52/57 (91%)
 Strand = Plus / Minus

                                                                    
Query: 393 tcctttgcctttgtgatgtcaggcttcctctggcgagggtcatcaggagtgttctca 449
           ||||| || ||||||||||||||||||||||||||||| ||||| || |||||||||
Sbjct: 702 tccttcgcttttgtgatgtcaggcttcctctggcgaggatcatccggcgtgttctca 646
to top
>gb|AY922315.1| Populus tomentosa UDP-glucuronic acid decarboxylase 3 (UXS3) mRNA,
           complete cds
          Length = 1129

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 49/55 (89%)
 Strand = Plus / Minus

                                                                  
Query: 394 cctttgcctttgtgatgtcaggcttcctctggcgagggtcatcaggagtgttctc 448
           ||||||||||||| |||||||| |||||||| || || ||||||||||| |||||
Sbjct: 981 cctttgcctttgtaatgtcaggtttcctctgtcgtggatcatcaggagtattctc 927
to top
>gb|AY619950.1| Nicotiana tabacum UDP-glucuronate decarboxylase 1 mRNA, complete
           cds
          Length = 1279

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 44/50 (88%)
 Strand = Plus / Minus

                                                             
Query: 396 tttgcctttgtgatgtcaggcttcctctggcgagggtcatcaggagtgtt 445
           ||||||||||||||||| || || ||||| ||||| ||||| ||||||||
Sbjct: 964 tttgcctttgtgatgtccggttttctctgccgaggatcatctggagtgtt 915
to top
>ref|NM_114511.2| Arabidopsis thaliana UXS5; catalytic AT3G46440 (UXS5) transcript
            variant AT3G46440.1 mRNA, complete cds
          Length = 1374

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 44/51 (86%)
 Strand = Plus / Minus

                                                               
Query: 399  gcctttgtgatgtcaggcttcctctggcgagggtcatcaggagtgttctca 449
            |||||||||||||| ||||||||||| |  || ||||| || |||||||||
Sbjct: 1051 gcctttgtgatgtctggcttcctctgtcttggatcatccggtgtgttctca 1001
to top
>ref|NM_001035743.1| Arabidopsis thaliana UXS5; catalytic AT3G46440 (UXS5) transcript
            variant AT3G46440.2 mRNA, complete cds
          Length = 1464

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 44/51 (86%)
 Strand = Plus / Minus

                                                               
Query: 399  gcctttgtgatgtcaggcttcctctggcgagggtcatcaggagtgttctca 449
            |||||||||||||| ||||||||||| |  || ||||| || |||||||||
Sbjct: 1141 gcctttgtgatgtctggcttcctctgtcttggatcatccggtgtgttctca 1091
to top
>ref|NM_116149.2| Arabidopsis thaliana unknown protein AT3G62840 mRNA, complete cds
          Length = 1063

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 32/35 (91%)
 Strand = Plus / Plus

                                               
Query: 399  gcctttgtgatgtcaggcttcctctggcgagggtc 433
            |||||||||||||||||||| |||| | |||||||
Sbjct: 966  gcctttgtgatgtcaggctttctcttgtgagggtc 1000
to top
>ref|NM_116148.1| Arabidopsis thaliana UXS2 (UDP-GLUCURONIC ACID DECARBOXYLASE 2);
            catalytic/ dTDP-glucose 4,6-dehydratase AT3G62830 (UXS2)
            mRNA, complete cds
          Length = 1338

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                               
Query: 399  gcctttgtgatgtcaggcttcctctggcgagggtc 433
            |||||||||||||||||||| |||| | |||||||
Sbjct: 1193 gcctttgtgatgtcaggctttctcttgtgagggtc 1159
to top
>gb|AY143897.1| Arabidopsis thaliana At3g62830/F26K9_260 mRNA, complete cds
          Length = 1338

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                               
Query: 399  gcctttgtgatgtcaggcttcctctggcgagggtc 433
            |||||||||||||||||||| |||| | |||||||
Sbjct: 1193 gcctttgtgatgtcaggctttctcttgtgagggtc 1159
to top
>gb|AY096586.1| Arabidopsis thaliana putative dTDP-glucose 4-6-dehydratases
           (At3g46440) mRNA, complete cds
          Length = 1057

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 44/51 (86%)
 Strand = Plus / Minus

                                                              
Query: 399 gcctttgtgatgtcaggcttcctctggcgagggtcatcaggagtgttctca 449
           |||||||||||||| ||||||||||| |  || ||||| || |||||||||
Sbjct: 926 gcctttgtgatgtctggcttcctctgtcttggatcatccggtgtgttctca 876
to top
>gb|AY072098.1| Arabidopsis thaliana putative dTDP-glucose 4-6-dehydratase
            (At3g46440) mRNA, complete cds
          Length = 1356

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 44/51 (86%)
 Strand = Plus / Minus

                                                               
Query: 399  gcctttgtgatgtcaggcttcctctggcgagggtcatcaggagtgttctca 449
            |||||||||||||| ||||||||||| |  || ||||| || |||||||||
Sbjct: 1051 gcctttgtgatgtctggcttcctctgtcttggatcatccggtgtgttctca 1001
to top
>emb|AL162651.1|ATF26K9 Arabidopsis thaliana DNA chromosome 3, BAC clone F26K9
          Length = 110257

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                                
Query: 399   gcctttgtgatgtcaggcttcctctggcgagggtc 433
             |||||||||||||||||||| |||| | |||||||
Sbjct: 88182 gcctttgtgatgtcaggctttctcttgtgagggtc 88148
to top
>emb|AL133298.1|ATF18L15 Arabidopsis thaliana DNA chromosome 3, BAC clone F18L15
          Length = 100328

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 44/51 (86%)
 Strand = Plus / Plus

                                                                
Query: 399   gcctttgtgatgtcaggcttcctctggcgagggtcatcaggagtgttctca 449
             |||||||||||||| ||||||||||| |  || ||||| || |||||||||
Sbjct: 75554 gcctttgtgatgtctggcttcctctgtcttggatcatccggtgtgttctca 75604
to top
>gb|AF361617.1| Arabidopsis thaliana AT3g62830/F26K9_260 mRNA, complete cds
          Length = 1663

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                               
Query: 399  gcctttgtgatgtcaggcttcctctggcgagggtc 433
            |||||||||||||||||||| |||| | |||||||
Sbjct: 1346 gcctttgtgatgtcaggctttctcttgtgagggtc 1312
to top
>gb|AY050389.1| Arabidopsis thaliana AT3g62830/F26K9_260 mRNA, complete cds
          Length = 1701

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                               
Query: 399  gcctttgtgatgtcaggcttcctctggcgagggtc 433
            |||||||||||||||||||| |||| | |||||||
Sbjct: 1346 gcctttgtgatgtcaggctttctcttgtgagggtc 1312
to top
>emb|BX823718.1|CNS0A7QP Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTLS6ZC01 of Adult vegetative tissue of strain col-0
           of Arabidopsis thaliana (thale cress)
          Length = 1114

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 44/51 (86%)
 Strand = Plus / Minus

                                                              
Query: 399 gcctttgtgatgtcaggcttcctctggcgagggtcatcaggagtgttctca 449
           |||||||||||||| ||||||||||| |  || ||||| || |||||||||
Sbjct: 876 gcctttgtgatgtctggcttcctctgtcttggatcatccggtgtgttctca 826
to top
>emb|BX824968.1|CNS0A6QT Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTPGH86ZD03 of Hormone Treated Callus of strain col-0
           of Arabidopsis thaliana (thale cress)
          Length = 1211

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 44/51 (86%)
 Strand = Plus / Minus

                                                              
Query: 399 gcctttgtgatgtcaggcttcctctggcgagggtcatcaggagtgttctca 449
           |||||||||||||| ||||||||||| |  || ||||| || |||||||||
Sbjct: 950 gcctttgtgatgtctggcttcctctgtcttggatcatccggtgtgttctca 900
to top
>emb|BX822583.1|CNS0A63N Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTFB50ZB02 of Flowers and buds of strain col-0 of
           Arabidopsis thaliana (thale cress)
          Length = 451

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                              
Query: 399 gcctttgtgatgtcaggcttcctctggcgagggtc 433
           |||||||||||||||||||| |||| | |||||||
Sbjct: 92  gcctttgtgatgtcaggctttctcttgtgagggtc 58
to top
>emb|BX825822.1|CNS0A4P6 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTSIL65ZB07 of Silique of strain col-0 of Arabidopsis
           thaliana (thale cress)
          Length = 923

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                              
Query: 399 gcctttgtgatgtcaggcttcctctggcgagggtc 433
           |||||||||||||||||||| |||| | |||||||
Sbjct: 564 gcctttgtgatgtcaggctttctcttgtgagggtc 530
to top
>gb|AY087118.1| Arabidopsis thaliana clone 31901 mRNA, complete sequence
          Length = 1281

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 44/51 (86%)
 Strand = Plus / Minus

                                                              
Query: 399 gcctttgtgatgtcaggcttcctctggcgagggtcatcaggagtgttctca 449
           |||||||||||||| ||||||||||| |  || ||||| || |||||||||
Sbjct: 987 gcctttgtgatgtctggcttcctctgtcttggatcatccggtgtgttctca 937
to top
>gb|AF387788.1| Arabidopsis thaliana UDP-glucuronic acid decarboxylase (UXS2) mRNA,
            complete cds
          Length = 1338

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                               
Query: 399  gcctttgtgatgtcaggcttcctctggcgagggtc 433
            |||||||||||||||||||| |||| | |||||||
Sbjct: 1193 gcctttgtgatgtcaggctttctcttgtgagggtc 1159
to top
>emb|Z49239.1|ATD18MR A.thaliana mRNA for putative dTDP-glucose 4-6-dehydratases
          Length = 1660

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                               
Query: 399  gcctttgtgatgtcaggcttcctctggcgagggtc 433
            |||||||||||||||||||| |||| | |||||||
Sbjct: 1332 gcctttgtgatgtcaggctttctcttgtgagggtc 1298
to top
>gb|AC155339.1| Brassica rapa subsp. pekinensis chromosome Cytogenetic chromosome 1
             clone KBrH015H17, complete sequence
          Length = 110885

 Score = 44.1 bits (22), Expect = 0.44
 Identities = 34/38 (89%)
 Strand = Plus / Minus

                                                   
Query: 399   gcctttgtgatgtcaggcttcctctggcgagggtcatc 436
             |||||||| ||||||||||| |||| | ||||||||||
Sbjct: 19871 gcctttgtaatgtcaggctttctcttgtgagggtcatc 19834
to top
>gb|AC155335.1| Brassica rapa subsp. pekinensis chromosome Cytogenetic chromosome 1 clone
              KBrH001H24, complete sequence
          Length = 118144

 Score = 44.1 bits (22), Expect = 0.44
 Identities = 34/38 (89%)
 Strand = Plus / Minus

                                                    
Query: 399    gcctttgtgatgtcaggcttcctctggcgagggtcatc 436
              |||||||| ||||||||||| |||| | ||||||||||
Sbjct: 106049 gcctttgtaatgtcaggctttctcttgtgagggtcatc 106012
to top
>gb|AC122912.2| Mus musculus BAC clone RP23-61E5 from 7, complete sequence
          Length = 255062

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 399    gcctttgtgatgtcaggcttc 419
              |||||||||||||||||||||
Sbjct: 163613 gcctttgtgatgtcaggcttc 163593
to top
>gb|CP000108.1| Chlorobium chlorochromatii CaD3, complete genome
          Length = 2572079

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 35     taattgatttagggaagtgc 54
              ||||||||||||||||||||
Sbjct: 657464 taattgatttagggaagtgc 657445
to top
>gb|U23514.3| Caenorhabditis elegans cosmid F48E8, complete sequence
          Length = 35325

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 126   aaagtttctaataatacaat 145
             ||||||||||||||||||||
Sbjct: 20319 aaagtttctaataatacaat 20300
to top
>gb|AC125125.4| Mus musculus BAC clone RP24-274E6 from chromosome 8, complete sequence
          Length = 180801

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 476    gatcaactccttcacgttct 495
              ||||||||||||||||||||
Sbjct: 157934 gatcaactccttcacgttct 157915
to top
>emb|AL592430.8| Human DNA sequence from clone RP11-388P9 on chromosome 10 Contains part
              of the ANK3 gene for ankyrin 3, node of Ranvier (ankyrin G)
              and a novel gene, complete sequence
          Length = 145136

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 126    aaagtttctaataatacaat 145
              ||||||||||||||||||||
Sbjct: 103537 aaagtttctaataatacaat 103518
to top
>emb|BX908396.13| Zebrafish DNA sequence from clone CH211-267G5 in linkage group 18,
              complete sequence
          Length = 149493

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 125    taaagtttctaataatacaa 144
              ||||||||||||||||||||
Sbjct: 107638 taaagtttctaataatacaa 107657
to top
>gb|AC110615.3| Homo sapiens BAC clone RP11-556N4 from 4, complete sequence
          Length = 195101

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 121   tatataaagtttctaataat 140
             ||||||||||||||||||||
Sbjct: 13115 tatataaagtttctaataat 13096
to top
>gb|AC159135.11| Mus musculus 10 BAC RP23-184H24 (Roswell Park Cancer Institute
           (C57BL/6J Female) Mouse BAC Library) complete sequence
          Length = 207228

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 159 gacaaaggtgtaattggttt 178
           ||||||||||||||||||||
Sbjct: 337 gacaaaggtgtaattggttt 318
to top
>gb|AC099760.5| Mus musculus BAC clone RP23-122E16 from chromosome 8, complete sequence
          Length = 193884

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 297    ttggccttcttgggcactgc 316
              ||||||||||||||||||||
Sbjct: 153079 ttggccttcttgggcactgc 153098
to top
>gb|AC159335.10| Mus musculus 10 BAC RP24-447O4 (Roswell Park Cancer Institute (C57BL/6J
             Male) Mouse BAC Library) complete sequence
          Length = 135177

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 159   gacaaaggtgtaattggttt 178
             ||||||||||||||||||||
Sbjct: 76946 gacaaaggtgtaattggttt 76927
to top
>emb|CT025908.12| Zebrafish DNA sequence from clone CH211-163B1 in linkage group 18,
              complete sequence
          Length = 176163

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 125    taaagtttctaataatacaa 144
              ||||||||||||||||||||
Sbjct: 165685 taaagtttctaataatacaa 165666
to top
>gb|AY108129.1| Zea mays PCO069672 mRNA sequence
          Length = 984

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 372 ttgggctcccagtcaagaac 391
           ||||||||||||||||||||
Sbjct: 623 ttgggctcccagtcaagaac 604
to top
>emb|CT009662.23| Mouse DNA sequence from clone CH29-511O15 on chromosome 17, complete
              sequence
          Length = 231197

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 237    tatgagtatgctctggcaaa 256
              ||||||||||||||||||||
Sbjct: 208325 tatgagtatgctctggcaaa 208306
to top
>emb|AL929024.9| Mouse DNA sequence from clone RP23-480H10 on chromosome 2, complete
             sequence
          Length = 159617

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 297   ttggccttcttgggcactgc 316
             ||||||||||||||||||||
Sbjct: 53068 ttggccttcttgggcactgc 53049


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,996,433
Number of Sequences: 3902068
Number of extensions: 3996433
Number of successful extensions: 72628
Number of sequences better than 10.0: 48
Number of HSP's better than 10.0 without gapping: 48
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 72480
Number of HSP's gapped (non-prelim): 147
length of query: 512
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 489
effective length of database: 17,143,297,704
effective search space: 8383072577256
effective search space used: 8383072577256
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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